Wall clock time and date at job start Wed Apr 1 2020 01:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99594 * 2 1 4 4 C 1.52997 * 109.46627 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47000 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47208 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 5 4 9 9 C 1.46927 * 120.63303 * 359.72079 * 8 6 5 10 10 C 1.53193 * 108.77386 * 126.36982 * 9 8 6 11 11 C 1.53045 * 109.31211 * 54.63774 * 10 9 8 12 12 H 1.09001 * 109.46023 * 58.65235 * 11 10 9 13 13 N 1.46896 * 109.45965 * 178.61410 * 11 10 9 14 14 C 1.46897 * 110.99765 * 274.99444 * 13 11 10 15 15 C 1.50705 * 109.46991 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99992 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00064 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00339 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99386 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00281 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99821 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99920 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46936 * 59.99903 * 22 20 18 24 24 H 1.48502 * 109.46825 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47009 * 300.00048 * 22 20 18 26 26 C 1.53043 * 109.53613 * 298.63732 * 11 10 9 27 27 H 1.09007 * 109.49699 * 301.40886 * 26 11 10 28 28 C 1.53004 * 109.49720 * 181.31740 * 26 11 10 29 29 C 1.46925 * 120.62614 * 179.44850 * 8 6 5 30 30 H 1.08995 * 109.47252 * 60.00069 * 1 2 3 31 31 H 1.09008 * 109.47047 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46999 * 299.99909 * 1 2 3 33 33 H 1.08995 * 109.46862 * 60.00194 * 3 2 1 34 34 H 1.09001 * 109.46599 * 299.99766 * 3 2 1 35 35 H 1.09000 * 109.47849 * 59.99872 * 4 3 2 36 36 H 1.08998 * 109.47443 * 299.99739 * 4 3 2 37 37 H 1.09009 * 109.46730 * 59.99606 * 5 4 3 38 38 H 1.08998 * 109.46846 * 300.00150 * 5 4 3 39 39 H 1.08997 * 109.58480 * 246.16089 * 9 8 6 40 40 H 1.08999 * 109.58607 * 6.44143 * 9 8 6 41 41 H 1.08996 * 109.49520 * 174.58628 * 10 9 8 42 42 H 1.09000 * 109.49888 * 294.65354 * 10 9 8 43 43 H 1.00892 * 111.00476 * 38.95242 * 13 11 10 44 44 H 1.08998 * 109.47922 * 300.00800 * 14 13 11 45 45 H 1.09005 * 109.47071 * 60.00829 * 14 13 11 46 46 H 0.97005 * 119.99891 * 0.02562 * 17 15 14 47 47 H 0.97004 * 119.99674 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.46864 * 59.99276 * 28 26 11 49 49 H 1.08997 * 109.47215 * 179.97438 * 28 26 11 50 50 H 1.08998 * 109.46989 * 299.99515 * 28 26 11 51 51 H 1.09000 * 109.59194 * 353.41299 * 29 8 6 52 52 H 1.09004 * 109.59115 * 113.83935 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 -0.0013 6 6 5.6600 2.4635 -0.0013 7 8 6.1816 1.3686 -0.0004 8 7 6.4239 3.5739 0.0039 9 6 5.8066 4.9072 0.0033 10 6 6.3749 5.7141 1.1751 11 6 7.9026 5.7287 1.0858 12 1 8.2066 6.1658 0.1346 13 7 8.4497 6.5293 2.1892 14 6 8.4785 7.9560 1.8404 15 6 9.0451 8.7437 2.9936 16 8 9.3912 8.1726 4.0062 17 7 9.1671 10.0826 2.8998 18 6 9.6829 10.7991 3.9486 19 1 9.9911 10.2906 4.8502 20 6 9.8083 12.1796 3.8521 21 7 9.4328 12.7983 2.7552 22 14 10.5105 13.1559 5.2815 23 1 11.8908 12.6895 5.5688 24 1 10.5379 14.5984 4.9296 25 1 9.6604 12.9559 6.4826 26 6 8.4347 4.2969 1.1820 27 1 8.1102 3.8507 2.1221 28 6 9.9635 4.3154 1.1256 29 6 7.8896 3.4740 0.0161 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8463 -0.8900 35 1 3.8568 0.6439 -0.8908 36 1 3.8574 0.6437 0.8891 37 1 3.8363 3.1236 0.8887 38 1 3.8356 3.1231 -0.8913 39 1 6.0338 5.4147 -0.9341 40 1 4.7266 4.8099 0.1137 41 1 5.9980 6.7358 1.1298 42 1 6.0693 5.2548 2.1152 43 1 7.9298 6.3755 3.0400 44 1 9.1032 8.1022 0.9593 45 1 7.4657 8.2988 1.6286 46 1 8.8899 10.5394 2.0901 47 1 9.5199 13.7621 2.6880 48 1 10.3507 4.9034 1.9577 49 1 10.3420 3.2956 1.1947 50 1 10.2871 4.7604 0.1847 51 1 8.1839 2.4315 0.1374 52 1 8.2903 3.8623 -0.9203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715419950.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:59 Heat of formation + Delta-G solvation = -154.719877 kcal Electronic energy + Delta-G solvation = -29725.785167 eV Core-core repulsion = 25530.687840 eV Total energy + Delta-G solvation = -4195.097327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.41630 -40.18910 -39.23118 -38.75596 -36.32114 -35.75794 -34.84838 -33.92067 -33.23604 -31.91754 -29.29485 -28.44184 -27.52264 -26.55293 -25.95745 -24.37735 -23.25802 -22.79754 -21.45024 -20.89784 -20.03767 -19.79227 -18.29801 -17.69647 -17.38759 -17.34782 -16.77832 -16.70637 -16.45742 -16.22865 -16.09441 -15.84118 -15.49778 -15.41562 -15.15924 -15.00552 -14.59781 -14.31499 -13.99225 -13.80491 -13.50968 -13.42694 -13.36231 -13.07929 -13.00867 -12.89836 -12.78539 -12.70203 -12.63219 -12.42028 -12.33333 -12.12062 -11.99072 -11.93166 -11.87899 -11.71427 -11.48674 -11.38854 -10.83720 -10.60213 -10.30957 -9.99444 -9.69324 -9.17708 -8.45261 -5.93581 1.40436 1.42614 1.52984 1.61200 1.96575 2.08579 2.30192 2.85494 2.94083 3.22469 3.52046 3.53883 3.69536 3.93028 3.98286 4.02161 4.08972 4.15093 4.27538 4.33350 4.35711 4.44648 4.47224 4.49092 4.52034 4.54462 4.58010 4.59470 4.62267 4.68437 4.73863 4.76370 4.82681 4.84777 4.87646 4.99317 5.11286 5.15695 5.20100 5.23962 5.35317 5.42307 5.45619 5.61700 5.94168 6.17446 6.26132 6.40211 6.45263 6.62651 7.14830 7.16486 7.59196 8.15087 8.71670 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.001740 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.056779 B =16092.434487 C =17045.077841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.061 3.939 4 C -0.101 4.101 5 C -0.128 4.128 6 C 0.508 3.492 7 O -0.590 6.590 8 N -0.610 5.610 9 C 0.111 3.889 10 C -0.164 4.164 11 C 0.095 3.905 12 H 0.090 0.910 13 N -0.674 5.674 14 C 0.069 3.931 15 C 0.437 3.563 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.083 4.083 27 H 0.054 0.946 28 C -0.132 4.132 29 C 0.120 3.880 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.342 0.658 44 H 0.102 0.898 45 H 0.071 0.929 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.052 0.948 49 H 0.051 0.949 50 H 0.059 0.941 51 H 0.073 0.927 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.209 -16.503 -12.449 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.015 4.015 4 C -0.139 4.139 5 C -0.168 4.168 6 C 0.298 3.702 7 O -0.471 6.471 8 N -0.343 5.343 9 C -0.012 4.012 10 C -0.203 4.203 11 C -0.015 4.015 12 H 0.108 0.892 13 N -0.305 5.305 14 C -0.063 4.063 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.095 0.905 20 C -0.210 4.210 21 N -0.559 5.559 22 Si 0.814 3.186 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.103 4.103 27 H 0.073 0.927 28 C -0.190 4.190 29 C -0.003 4.003 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.161 0.839 44 H 0.120 0.880 45 H 0.089 0.911 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.092 0.908 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.934 -17.488 -12.017 26.535 hybrid contribution -0.489 1.178 0.658 1.435 sum -16.423 -16.310 -11.359 25.783 Atomic orbital electron populations 1.22916 0.79376 1.03677 1.01056 1.87848 1.21616 1.29402 1.95678 1.22612 0.92685 0.84360 1.01819 1.21155 0.93583 0.96402 1.02806 1.21603 0.89184 0.98919 1.07046 1.21259 0.90993 0.83211 0.74703 1.90693 1.76087 1.28196 1.52105 1.48270 1.06644 1.06899 1.72448 1.21946 0.99364 0.80865 0.98984 1.22664 0.96381 1.01691 0.99609 1.21675 0.92232 0.92981 0.94598 0.89185 1.60105 1.59502 1.04898 1.05959 1.21533 1.00708 0.88415 0.95661 1.20988 0.83734 0.82559 0.90279 1.90500 1.55839 1.70352 1.34511 1.41918 1.56312 1.05796 1.17011 1.19611 1.40004 0.90113 0.96766 0.90517 1.25977 0.97444 0.97170 1.00453 1.69656 1.47785 1.10765 1.27731 0.85032 0.78619 0.77137 0.77810 1.19933 1.19454 1.19769 1.21245 0.96456 0.94608 0.97948 0.92744 1.21571 0.94046 1.01028 1.02350 1.21532 0.79415 1.00850 0.98537 0.92803 0.89057 0.93053 0.91726 0.91247 0.92280 0.92817 0.86298 0.85503 0.89088 0.86728 0.89312 0.91870 0.83946 0.87976 0.91116 0.76926 0.91325 0.92931 0.92965 0.92175 0.90807 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.43 -7.32 10.70 -148.98 -1.59 -8.92 16 3 C 0.06 0.73 5.94 71.98 0.43 1.16 16 4 C -0.10 -1.58 4.87 30.59 0.15 -1.44 16 5 C -0.13 -1.39 4.05 29.85 0.12 -1.27 16 6 C 0.51 9.93 7.70 87.66 0.67 10.60 16 7 O -0.59 -17.26 15.40 -3.04 -0.05 -17.31 16 8 N -0.61 -10.01 2.98 -819.73 -2.44 -12.45 16 9 C 0.11 1.11 6.35 86.36 0.55 1.65 16 10 C -0.16 -2.37 5.33 30.67 0.16 -2.21 16 11 C 0.09 1.88 1.89 44.95 0.09 1.97 16 12 H 0.09 1.63 7.80 -2.39 -0.02 1.61 16 13 N -0.67 -19.22 5.05 -495.42 -2.50 -21.72 16 14 C 0.07 2.14 5.96 85.56 0.51 2.65 16 15 C 0.44 19.99 7.82 87.66 0.69 20.68 16 16 O -0.63 -34.05 15.78 -3.07 -0.05 -34.10 16 17 N -0.57 -28.54 5.29 -306.98 -1.62 -30.16 16 18 C -0.34 -18.78 9.68 84.04 0.81 -17.97 16 19 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 20 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 21 N -0.92 -48.51 13.05 21.66 0.28 -48.23 16 22 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 C -0.08 -1.74 2.58 -10.86 -0.03 -1.77 16 27 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 28 C -0.13 -3.02 9.03 71.98 0.65 -2.37 16 29 C 0.12 2.28 5.69 86.22 0.49 2.77 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 36 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 37 H 0.12 0.79 7.69 -2.38 -0.02 0.77 16 38 H 0.13 0.61 7.94 -2.39 -0.02 0.60 16 39 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.11 0.52 5.93 -2.39 -0.01 0.50 16 41 H 0.09 1.17 7.43 -2.39 -0.02 1.15 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.34 10.64 8.18 -89.70 -0.73 9.91 16 44 H 0.10 2.87 8.05 -2.39 -0.02 2.85 16 45 H 0.07 1.82 7.42 -2.38 -0.02 1.80 16 46 H 0.40 18.60 7.90 -92.70 -0.73 17.87 16 47 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 48 H 0.05 1.51 7.57 -2.39 -0.02 1.49 16 49 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.07 1.73 7.01 -2.39 -0.02 1.71 16 52 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -75.86 416.65 0.51 -75.35 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -0.55 Total: 37.23 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 7.01 Total: 15.88 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -6.28 Total: -112.56 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -1.69 Total: -60.33 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -75.86 0.51 -75.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715419950.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.369 kcal (2) G-P(sol) polarization free energy of solvation -75.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds