Wall clock time and date at job start Wed Apr 1 2020 01:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42907 * 113.99697 * 2 1 4 4 C 1.52997 * 109.46858 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47067 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47364 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00072 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00186 * 179.97438 * 6 5 4 9 9 C 1.46925 * 120.63041 * 359.97438 * 8 6 5 10 10 C 1.53191 * 108.77423 * 233.62788 * 9 8 6 11 11 C 1.53037 * 109.31499 * 305.36620 * 10 9 8 12 12 H 1.09002 * 109.46010 * 301.35960 * 11 10 9 13 13 N 1.46904 * 109.46023 * 181.38376 * 11 10 9 14 14 C 1.46907 * 110.99758 * 85.00073 * 13 11 10 15 15 C 1.50697 * 109.46885 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00364 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99713 * 179.97438 * 15 14 13 18 18 C 1.37109 * 120.00043 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99603 * 0.02562 * 18 17 15 20 20 C 1.38946 * 119.99879 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00240 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99521 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46729 * 90.00638 * 22 20 18 24 24 H 1.48504 * 109.47135 * 209.99992 * 22 20 18 25 25 H 1.48499 * 109.47233 * 330.00399 * 22 20 18 26 26 C 1.53043 * 109.53919 * 61.36673 * 11 10 9 27 27 H 1.09001 * 109.50069 * 178.68681 * 26 11 10 28 28 C 1.52994 * 109.49865 * 58.58276 * 26 11 10 29 29 C 1.46926 * 120.63044 * 180.02562 * 8 6 5 30 30 H 1.08999 * 109.47139 * 59.99989 * 1 2 3 31 31 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46986 * 300.00087 * 1 2 3 33 33 H 1.09002 * 109.46986 * 59.99674 * 3 2 1 34 34 H 1.09007 * 109.46882 * 299.99739 * 3 2 1 35 35 H 1.08998 * 109.47154 * 59.99992 * 4 3 2 36 36 H 1.08997 * 109.47289 * 300.00028 * 4 3 2 37 37 H 1.08995 * 109.47395 * 59.99728 * 5 4 3 38 38 H 1.09006 * 109.47337 * 300.00101 * 5 4 3 39 39 H 1.08998 * 109.58340 * 353.41744 * 9 8 6 40 40 H 1.09005 * 109.58474 * 113.84031 * 9 8 6 41 41 H 1.08997 * 109.49512 * 65.31959 * 10 9 8 42 42 H 1.08998 * 109.49723 * 185.41351 * 10 9 8 43 43 H 1.00893 * 110.99942 * 321.04515 * 13 11 10 44 44 H 1.08996 * 109.46782 * 299.99863 * 14 13 11 45 45 H 1.09002 * 109.47037 * 59.99899 * 14 13 11 46 46 H 0.96999 * 120.00821 * 0.02562 * 17 15 14 47 47 H 0.96997 * 119.99874 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.47867 * 300.16705 * 28 26 11 49 49 H 1.09009 * 109.46836 * 60.16695 * 28 26 11 50 50 H 1.09001 * 109.47333 * 180.16329 * 28 26 11 51 51 H 1.09006 * 109.58406 * 246.15786 * 29 8 6 52 52 H 1.09002 * 109.59019 * 6.57775 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1577 2.5825 -0.0013 6 6 5.6600 2.4636 -0.0013 7 8 6.1816 1.3687 -0.0004 8 7 6.4239 3.5739 -0.0023 9 6 5.8066 4.9072 -0.0040 10 6 6.3804 5.7147 -1.1726 11 6 7.9076 5.7292 -1.0763 12 1 8.2072 6.1656 -0.1234 13 7 8.4598 6.5305 -2.1768 14 6 8.4870 7.9571 -1.8272 15 6 9.0588 8.7452 -2.9773 16 8 9.4089 8.1748 -3.9889 17 7 9.1803 10.0841 -2.8823 18 6 9.7001 10.8013 -3.9289 19 1 10.0118 10.2934 -4.8295 20 6 9.8249 12.1817 -3.8310 21 7 9.4452 12.7998 -2.7353 22 14 10.5324 13.1588 -5.2573 23 1 9.4341 13.5718 -6.1674 24 1 11.2234 14.3656 -4.7361 25 1 11.5021 12.3161 -6.0020 26 6 8.4401 4.2976 -1.1709 27 1 9.5291 4.3107 -1.1257 28 6 7.9907 3.6719 -2.4928 29 6 7.8897 3.4741 -0.0029 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6885 1.8465 0.8900 34 1 1.6886 1.8464 -0.8901 35 1 3.8567 0.6440 -0.8908 36 1 3.8574 0.6437 0.8891 37 1 3.8365 3.1236 0.8886 38 1 3.8357 3.1232 -0.8913 39 1 4.7274 4.8100 -0.1220 40 1 6.0295 5.4143 0.9348 41 1 6.0796 5.2556 -2.1143 42 1 6.0033 6.7364 -1.1287 43 1 7.9438 6.3770 -3.0301 44 1 7.4732 8.2996 -1.6199 45 1 9.1077 8.1028 -0.9431 46 1 8.9001 10.5404 -2.0735 47 1 9.5327 13.7634 -2.6669 48 1 6.9017 3.6605 -2.5378 49 1 8.3826 4.2582 -3.3240 50 1 8.3678 2.6513 -2.5585 51 1 8.2829 3.8640 0.9360 52 1 8.1850 2.4314 -0.1200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715419954.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:03 Heat of formation + Delta-G solvation = -126.649074 kcal Electronic energy + Delta-G solvation = -29913.878608 eV Core-core repulsion = 25719.998523 eV Total energy + Delta-G solvation = -4193.880086 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72777 -38.83813 -38.29423 -37.85215 -35.15075 -34.16971 -33.88601 -32.73027 -31.30024 -30.93295 -28.64911 -27.10911 -26.90762 -25.78316 -24.60755 -23.43547 -23.00451 -22.13181 -20.02649 -19.43094 -18.64079 -17.90192 -17.61813 -16.80881 -16.79119 -16.09718 -15.94328 -15.70738 -15.34054 -15.18183 -15.04731 -14.78453 -14.54816 -14.07679 -13.92731 -13.87748 -13.69150 -13.51463 -13.04748 -12.82605 -12.54047 -12.46822 -12.26494 -12.16288 -12.11863 -11.79069 -11.62159 -11.59997 -11.50500 -11.41161 -11.31685 -11.09340 -11.06486 -10.73049 -10.49680 -10.41038 -10.23623 -10.10248 -9.97751 -9.53016 -8.87772 -8.47914 -8.05829 -7.97638 -6.43983 -3.84788 2.39019 2.66930 3.16122 3.25052 3.31149 3.34999 3.88533 4.05058 4.16939 4.27653 4.42730 4.52702 4.65909 4.67286 4.76216 4.80531 4.86318 4.91894 4.97217 4.98941 5.01256 5.03619 5.09752 5.16297 5.19149 5.22426 5.24986 5.34257 5.42846 5.52860 5.62985 5.66515 5.68850 5.71404 5.78601 5.87608 5.90167 5.99323 6.05729 6.14235 6.24549 6.31520 6.43163 6.72505 7.14175 7.21226 7.53177 7.63385 7.93815 8.04323 8.59034 9.15909 9.52117 10.03585 10.73711 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.001728 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.684540 B =16202.139097 C =16863.398325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.138 4.138 6 C 0.516 3.484 7 O -0.540 6.540 8 N -0.609 5.609 9 C 0.111 3.889 10 C -0.172 4.172 11 C 0.094 3.906 12 H 0.078 0.922 13 N -0.660 5.660 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.092 4.092 27 H 0.091 0.909 28 C -0.143 4.143 29 C 0.115 3.885 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.350 0.650 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.049 0.951 49 H 0.067 0.933 50 H 0.050 0.950 51 H 0.067 0.933 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.863 -18.040 10.645 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.178 4.178 6 C 0.305 3.695 7 O -0.417 6.417 8 N -0.343 5.343 9 C -0.012 4.012 10 C -0.212 4.212 11 C -0.017 4.017 12 H 0.096 0.904 13 N -0.291 5.291 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.112 4.112 27 H 0.109 0.891 28 C -0.201 4.201 29 C -0.008 4.008 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.170 0.830 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.069 0.931 51 H 0.085 0.915 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.551 -19.055 10.174 26.045 hybrid contribution -1.073 1.662 -0.189 1.988 sum -15.625 -17.393 9.985 25.424 Atomic orbital electron populations 1.22752 0.80914 1.02865 1.00000 1.87894 1.19770 1.27965 1.95418 1.22555 0.94062 0.84770 1.00204 1.21223 0.92150 0.95806 1.05022 1.21582 0.92379 0.99362 1.04481 1.20530 0.89364 0.83833 0.75810 1.90708 1.74944 1.26260 1.49803 1.48114 1.07027 1.05924 1.73187 1.21714 0.97832 0.82620 0.99065 1.22779 0.98415 1.00677 0.99309 1.21569 0.90721 0.93874 0.95558 0.90380 1.60182 1.58451 1.05493 1.05020 1.21707 0.99456 0.88489 0.98550 1.19828 0.85430 0.82980 0.89221 1.90528 1.54353 1.69660 1.32178 1.41867 1.55663 1.04996 1.17525 1.19709 1.37629 0.89118 0.96483 0.87933 1.25251 0.97696 0.96895 0.98044 1.69607 1.47819 1.10235 1.26669 0.85862 0.79065 0.78855 0.80538 1.20444 1.20913 1.19393 1.21463 1.01269 0.93539 0.94936 0.89077 1.21790 1.00701 1.00301 0.97287 1.21731 0.78680 1.02226 0.98176 0.94001 0.89563 0.94057 0.93240 0.93188 0.90228 0.90278 0.88739 0.88660 0.89788 0.90986 0.90654 0.90500 0.82976 0.93974 0.89673 0.77498 0.91885 0.93229 0.91421 0.93086 0.91492 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.53 10.70 -35.23 -0.38 -3.90 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.10 -0.85 4.87 -26.73 -0.13 -0.98 16 5 C -0.14 -0.93 4.05 -27.89 -0.11 -1.04 16 6 C 0.52 5.25 7.70 -10.99 -0.08 5.17 16 7 O -0.54 -7.59 15.40 5.56 0.09 -7.50 16 8 N -0.61 -5.47 2.41 -172.79 -0.42 -5.88 16 9 C 0.11 0.77 6.34 -3.71 -0.02 0.74 16 10 C -0.17 -1.51 4.99 -26.61 -0.13 -1.64 16 11 C 0.09 1.02 2.13 -67.67 -0.14 0.87 16 12 H 0.08 0.82 7.80 -51.93 -0.40 0.42 16 13 N -0.66 -9.82 5.43 -107.94 -0.59 -10.41 16 14 C 0.05 0.83 5.96 -4.97 -0.03 0.81 16 15 C 0.44 10.10 7.82 -10.99 -0.09 10.02 16 16 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 17 N -0.56 -14.00 5.29 -10.96 -0.06 -14.05 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 22 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 26 C -0.09 -0.98 2.91 -90.53 -0.26 -1.25 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 28 C -0.14 -1.64 8.46 37.15 0.31 -1.32 16 29 C 0.11 1.12 5.82 -3.74 -0.02 1.09 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.09 0.44 7.94 -51.93 -0.41 0.03 16 38 H 0.10 0.50 7.69 -51.93 -0.40 0.10 16 39 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.71 6.33 -51.93 -0.33 0.38 16 42 H 0.08 0.67 7.43 -51.93 -0.39 0.28 16 43 H 0.35 5.52 7.46 -39.30 -0.29 5.23 16 44 H 0.04 0.61 7.41 -51.93 -0.39 0.23 16 45 H 0.09 1.31 8.06 -51.93 -0.42 0.89 16 46 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 47 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.05 0.55 5.97 -51.93 -0.31 0.24 16 49 H 0.07 0.87 7.25 -51.92 -0.38 0.49 16 50 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.09 1.05 7.01 -51.93 -0.36 0.69 16 LS Contribution 411.24 15.07 6.20 6.20 Total: -1.00 -33.53 411.24 -7.85 -41.38 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -8.87 Total: 10.80 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 0.38 Total: 6.50 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.34 Total: -53.81 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.20 Total: -26.89 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.53 -7.85 -41.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715419954.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.269 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds