Wall clock time and date at job start Wed Apr 1 2020 01:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42907 * 113.99697 * 2 1 4 4 C 1.52997 * 109.46858 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47067 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47364 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00072 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00186 * 179.97438 * 6 5 4 9 9 C 1.46925 * 120.63041 * 359.97438 * 8 6 5 10 10 C 1.53191 * 108.77423 * 233.62788 * 9 8 6 11 11 C 1.53037 * 109.31499 * 305.36620 * 10 9 8 12 12 H 1.09002 * 109.46010 * 301.35960 * 11 10 9 13 13 N 1.46904 * 109.46023 * 181.38376 * 11 10 9 14 14 C 1.46907 * 110.99758 * 85.00073 * 13 11 10 15 15 C 1.50697 * 109.46885 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00364 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99713 * 179.97438 * 15 14 13 18 18 C 1.37109 * 120.00043 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99603 * 0.02562 * 18 17 15 20 20 C 1.38946 * 119.99879 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00240 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99521 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46729 * 90.00638 * 22 20 18 24 24 H 1.48504 * 109.47135 * 209.99992 * 22 20 18 25 25 H 1.48499 * 109.47233 * 330.00399 * 22 20 18 26 26 C 1.53043 * 109.53919 * 61.36673 * 11 10 9 27 27 H 1.09001 * 109.50069 * 178.68681 * 26 11 10 28 28 C 1.52994 * 109.49865 * 58.58276 * 26 11 10 29 29 C 1.46926 * 120.63044 * 180.02562 * 8 6 5 30 30 H 1.08999 * 109.47139 * 59.99989 * 1 2 3 31 31 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46986 * 300.00087 * 1 2 3 33 33 H 1.09002 * 109.46986 * 59.99674 * 3 2 1 34 34 H 1.09007 * 109.46882 * 299.99739 * 3 2 1 35 35 H 1.08998 * 109.47154 * 59.99992 * 4 3 2 36 36 H 1.08997 * 109.47289 * 300.00028 * 4 3 2 37 37 H 1.08995 * 109.47395 * 59.99728 * 5 4 3 38 38 H 1.09006 * 109.47337 * 300.00101 * 5 4 3 39 39 H 1.08998 * 109.58340 * 353.41744 * 9 8 6 40 40 H 1.09005 * 109.58474 * 113.84031 * 9 8 6 41 41 H 1.08997 * 109.49512 * 65.31959 * 10 9 8 42 42 H 1.08998 * 109.49723 * 185.41351 * 10 9 8 43 43 H 1.00893 * 110.99942 * 321.04515 * 13 11 10 44 44 H 1.08996 * 109.46782 * 299.99863 * 14 13 11 45 45 H 1.09002 * 109.47037 * 59.99899 * 14 13 11 46 46 H 0.96999 * 120.00821 * 0.02562 * 17 15 14 47 47 H 0.96997 * 119.99874 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.47867 * 300.16705 * 28 26 11 49 49 H 1.09009 * 109.46836 * 60.16695 * 28 26 11 50 50 H 1.09001 * 109.47333 * 180.16329 * 28 26 11 51 51 H 1.09006 * 109.58406 * 246.15786 * 29 8 6 52 52 H 1.09002 * 109.59019 * 6.57775 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1577 2.5825 -0.0013 6 6 5.6600 2.4636 -0.0013 7 8 6.1816 1.3687 -0.0004 8 7 6.4239 3.5739 -0.0023 9 6 5.8066 4.9072 -0.0040 10 6 6.3804 5.7147 -1.1726 11 6 7.9076 5.7292 -1.0763 12 1 8.2072 6.1656 -0.1234 13 7 8.4598 6.5305 -2.1768 14 6 8.4870 7.9571 -1.8272 15 6 9.0588 8.7452 -2.9773 16 8 9.4089 8.1748 -3.9889 17 7 9.1803 10.0841 -2.8823 18 6 9.7001 10.8013 -3.9289 19 1 10.0118 10.2934 -4.8295 20 6 9.8249 12.1817 -3.8310 21 7 9.4452 12.7998 -2.7353 22 14 10.5324 13.1588 -5.2573 23 1 9.4341 13.5718 -6.1674 24 1 11.2234 14.3656 -4.7361 25 1 11.5021 12.3161 -6.0020 26 6 8.4401 4.2976 -1.1709 27 1 9.5291 4.3107 -1.1257 28 6 7.9907 3.6719 -2.4928 29 6 7.8897 3.4741 -0.0029 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6885 1.8465 0.8900 34 1 1.6886 1.8464 -0.8901 35 1 3.8567 0.6440 -0.8908 36 1 3.8574 0.6437 0.8891 37 1 3.8365 3.1236 0.8886 38 1 3.8357 3.1232 -0.8913 39 1 4.7274 4.8100 -0.1220 40 1 6.0295 5.4143 0.9348 41 1 6.0796 5.2556 -2.1143 42 1 6.0033 6.7364 -1.1287 43 1 7.9438 6.3770 -3.0301 44 1 7.4732 8.2996 -1.6199 45 1 9.1077 8.1028 -0.9431 46 1 8.9001 10.5404 -2.0735 47 1 9.5327 13.7634 -2.6669 48 1 6.9017 3.6605 -2.5378 49 1 8.3826 4.2582 -3.3240 50 1 8.3678 2.6513 -2.5585 51 1 8.2829 3.8640 0.9360 52 1 8.1850 2.4314 -0.1200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715419954.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:02 Heat of formation + Delta-G solvation = -151.172240 kcal Electronic energy + Delta-G solvation = -29914.942013 eV Core-core repulsion = 25719.998523 eV Total energy + Delta-G solvation = -4194.943490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51145 -40.18952 -39.28615 -38.75837 -36.31075 -35.74101 -34.80266 -33.64436 -33.21368 -31.87202 -29.26013 -28.43763 -27.68989 -26.58775 -26.03032 -24.37584 -23.85953 -22.78277 -21.13513 -20.77404 -19.95115 -19.47419 -18.39764 -17.66455 -17.36929 -17.32522 -16.84277 -16.60777 -16.40520 -16.26576 -16.14679 -15.81201 -15.56268 -15.47343 -15.23665 -14.96084 -14.54618 -14.47232 -14.10218 -13.75667 -13.66487 -13.49758 -13.28288 -13.11203 -13.00600 -12.89525 -12.70808 -12.63927 -12.55326 -12.40672 -12.36356 -12.12252 -12.00536 -11.95722 -11.88849 -11.62214 -11.49523 -11.35282 -10.78287 -10.60109 -10.31325 -9.99598 -9.63524 -9.19873 -8.45665 -5.93984 1.38424 1.42590 1.54871 1.64820 1.99612 2.08083 2.30054 2.86081 2.94865 3.22085 3.53656 3.54099 3.74909 3.90881 3.98731 4.05509 4.10269 4.15817 4.24699 4.29183 4.34967 4.46494 4.48382 4.48903 4.51165 4.52949 4.57982 4.59604 4.62777 4.68241 4.74753 4.78777 4.85680 4.85762 4.88074 4.91839 5.11701 5.14409 5.18830 5.24174 5.26768 5.40791 5.42361 5.61867 5.94009 6.17581 6.26310 6.42763 6.46672 6.62334 7.14616 7.20037 7.58862 8.14702 8.71534 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.001728 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.684540 B =16202.139097 C =16863.398325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.061 3.939 4 C -0.101 4.101 5 C -0.129 4.129 6 C 0.509 3.491 7 O -0.589 6.589 8 N -0.606 5.606 9 C 0.112 3.888 10 C -0.166 4.166 11 C 0.096 3.904 12 H 0.090 0.910 13 N -0.677 5.677 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.275 1.275 26 C -0.087 4.087 27 H 0.079 0.921 28 C -0.137 4.137 29 C 0.119 3.881 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.343 0.657 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.054 0.946 49 H 0.049 0.951 50 H 0.043 0.957 51 H 0.083 0.917 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.794 -16.717 12.056 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.015 4.015 4 C -0.139 4.139 5 C -0.168 4.168 6 C 0.299 3.701 7 O -0.470 6.470 8 N -0.339 5.339 9 C -0.011 4.011 10 C -0.206 4.206 11 C -0.014 4.014 12 H 0.109 0.891 13 N -0.308 5.308 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.210 4.210 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.200 1.200 26 C -0.107 4.107 27 H 0.097 0.903 28 C -0.194 4.194 29 C -0.004 4.004 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.162 0.838 44 H 0.089 0.911 45 H 0.121 0.879 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.062 0.938 51 H 0.101 0.899 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.508 -17.705 11.622 26.853 hybrid contribution -0.457 1.180 -0.631 1.414 sum -16.966 -16.526 10.991 26.110 Atomic orbital electron populations 1.22914 0.79387 1.03672 1.01050 1.87849 1.21606 1.29407 1.95676 1.22617 0.92737 0.84349 1.01787 1.21148 0.93532 0.96426 1.02789 1.21601 0.89408 0.98862 1.06971 1.21195 0.90867 0.83247 0.74767 1.90693 1.76032 1.28169 1.52081 1.48201 1.06559 1.06759 1.72340 1.21928 0.99249 0.80951 0.98962 1.22697 0.96406 1.01590 0.99902 1.21629 0.92405 0.92869 0.94505 0.89150 1.60143 1.59708 1.04891 1.06061 1.21551 1.00699 0.88477 0.95728 1.21000 0.83766 0.82580 0.90264 1.90499 1.55809 1.70396 1.34532 1.41926 1.56160 1.05787 1.17170 1.19650 1.39770 0.90110 0.96910 0.90530 1.25977 0.97470 0.97171 1.00430 1.69658 1.47810 1.10763 1.27719 0.84968 0.78396 0.77511 0.77702 1.19609 1.19555 1.20019 1.21384 1.00661 0.93826 0.94800 0.90255 1.21708 1.00830 0.99584 0.97279 1.21595 0.79634 1.00892 0.98284 0.93055 0.89059 0.92816 0.91284 0.91755 0.92809 0.92307 0.85607 0.86374 0.86853 0.89105 0.91454 0.89552 0.83806 0.91076 0.87900 0.76910 0.91323 0.92750 0.93216 0.93811 0.89896 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.43 -7.31 10.70 -148.98 -1.59 -8.90 16 3 C 0.06 0.73 5.94 71.98 0.43 1.15 16 4 C -0.10 -1.56 4.87 30.59 0.15 -1.41 16 5 C -0.13 -1.37 4.05 29.85 0.12 -1.25 16 6 C 0.51 9.66 7.70 87.66 0.67 10.33 16 7 O -0.59 -16.87 15.40 -3.04 -0.05 -16.92 16 8 N -0.61 -9.52 2.41 -818.99 -1.98 -11.50 16 9 C 0.11 1.08 6.34 86.36 0.55 1.62 16 10 C -0.17 -2.38 4.99 30.67 0.15 -2.23 16 11 C 0.10 1.87 2.13 44.94 0.10 1.97 16 12 H 0.09 1.60 7.80 -2.39 -0.02 1.58 16 13 N -0.68 -19.39 5.43 -495.42 -2.69 -22.08 16 14 C 0.07 2.11 5.96 85.55 0.51 2.62 16 15 C 0.44 20.05 7.82 87.66 0.69 20.74 16 16 O -0.63 -34.20 15.78 -3.07 -0.05 -34.25 16 17 N -0.57 -28.61 5.29 -306.99 -1.62 -30.23 16 18 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 19 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 20 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 21 N -0.92 -48.54 13.05 21.66 0.28 -48.25 16 22 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 26 C -0.09 -1.79 2.91 -10.73 -0.03 -1.82 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 C -0.14 -3.16 8.46 71.98 0.61 -2.55 16 29 C 0.12 2.19 5.82 86.35 0.50 2.70 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 37 H 0.13 0.60 7.94 -2.39 -0.02 0.58 16 38 H 0.12 0.77 7.69 -2.38 -0.02 0.75 16 39 H 0.11 0.49 5.93 -2.39 -0.01 0.48 16 40 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.07 1.10 6.33 -2.39 -0.02 1.09 16 42 H 0.09 1.14 7.43 -2.39 -0.02 1.12 16 43 H 0.34 10.69 7.46 -89.70 -0.67 10.02 16 44 H 0.07 1.84 7.41 -2.39 -0.02 1.82 16 45 H 0.10 2.89 8.06 -2.39 -0.02 2.87 16 46 H 0.40 18.63 7.90 -92.71 -0.73 17.90 16 47 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 48 H 0.05 1.18 5.97 -2.39 -0.01 1.17 16 49 H 0.05 1.32 7.25 -2.38 -0.02 1.30 16 50 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 52 H 0.07 1.70 7.01 -2.39 -0.02 1.68 16 Total: -1.00 -75.89 411.24 0.83 -75.06 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -0.47 Total: 37.29 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 6.97 Total: 15.32 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -6.01 Total: -112.06 kcal Atomic # 8 Polarization: -58.38 SS G_CDS: -1.69 Total: -60.07 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -75.89 0.83 -75.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715419954.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.113 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds