Wall clock time and date at job start Wed Apr 1 2020 01:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99705 * 2 1 4 4 C 1.53005 * 109.46823 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47111 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47036 * 180.02562 * 5 4 3 7 7 O 1.21285 * 119.99819 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00175 * 180.02562 * 6 5 4 9 9 C 1.46926 * 120.62994 * 359.97438 * 8 6 5 10 10 C 1.53192 * 108.77820 * 233.62963 * 9 8 6 11 11 C 1.53033 * 109.31270 * 305.36633 * 10 9 8 12 12 H 1.09002 * 109.44693 * 301.34841 * 11 10 9 13 13 N 1.46899 * 109.46103 * 181.38169 * 11 10 9 14 14 C 1.46904 * 110.99856 * 84.93087 * 13 11 10 15 15 C 1.50699 * 109.47050 * 179.97438 * 14 13 11 16 16 O 1.21288 * 119.99872 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99617 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99696 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99705 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00055 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99873 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00071 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47314 * 119.99727 * 22 20 18 25 25 H 1.48500 * 109.46731 * 239.99961 * 22 20 18 26 26 C 1.53041 * 109.53898 * 61.36218 * 11 10 9 27 27 H 1.08996 * 109.52797 * 58.60477 * 26 11 10 28 28 C 1.53004 * 109.49660 * 178.68381 * 26 11 10 29 29 C 1.46927 * 120.63425 * 180.02562 * 8 6 5 30 30 H 1.09007 * 109.47015 * 299.99895 * 1 2 3 31 31 H 1.08996 * 109.47069 * 59.99694 * 1 2 3 32 32 H 1.08998 * 109.47202 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47244 * 60.00395 * 3 2 1 34 34 H 1.08995 * 109.47493 * 299.99745 * 3 2 1 35 35 H 1.09003 * 109.46940 * 60.00144 * 4 3 2 36 36 H 1.09001 * 109.46989 * 300.00508 * 4 3 2 37 37 H 1.08997 * 109.46837 * 60.00608 * 5 4 3 38 38 H 1.08989 * 109.47214 * 300.00188 * 5 4 3 39 39 H 1.09006 * 109.58406 * 353.41879 * 9 8 6 40 40 H 1.09002 * 109.59019 * 113.83868 * 9 8 6 41 41 H 1.09000 * 109.49511 * 65.31256 * 10 9 8 42 42 H 1.08995 * 109.49883 * 185.40976 * 10 9 8 43 43 H 1.00900 * 110.99951 * 208.88250 * 13 11 10 44 44 H 1.08997 * 109.47293 * 300.00460 * 14 13 11 45 45 H 1.09010 * 109.47013 * 59.99983 * 14 13 11 46 46 H 0.96995 * 120.00278 * 0.02562 * 17 15 14 47 47 H 0.96996 * 119.99793 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.46885 * 179.83832 * 28 26 11 49 49 H 1.08992 * 109.47045 * 299.83708 * 28 26 11 50 50 H 1.09000 * 109.47338 * 59.84089 * 28 26 11 51 51 H 1.08997 * 109.58859 * 246.15938 * 29 8 6 52 52 H 1.09000 * 109.58547 * 6.58356 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6601 2.4634 -0.0013 7 8 6.1816 1.3684 -0.0021 8 7 6.4241 3.5736 -0.0004 9 6 5.8069 4.9070 0.0011 10 6 6.3798 5.7170 -1.1661 11 6 7.9071 5.7312 -1.0708 12 1 8.2071 6.1658 -0.1172 13 7 8.4586 6.5348 -2.1700 14 6 8.4845 7.9608 -1.8180 15 6 9.0557 8.7514 -2.9668 16 8 9.4061 8.1830 -3.9792 17 7 9.1770 10.0902 -2.8690 18 6 9.6961 10.8096 -3.9144 19 1 10.0082 10.3034 -4.8159 20 6 9.8217 12.1897 -3.8134 21 7 9.4424 12.8055 -2.7162 22 14 10.5283 13.1699 -5.2379 23 1 10.8758 12.2479 -6.3490 24 1 9.5220 14.1553 -5.7082 25 1 11.7496 13.8854 -4.7887 26 6 8.4395 4.2998 -1.1688 27 1 8.1192 3.8557 -2.1113 28 6 9.9681 4.3181 -1.1064 29 6 7.8899 3.4738 -0.0022 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8567 0.6439 -0.8909 36 1 3.8574 0.6435 0.8891 37 1 3.8366 3.1226 0.8905 38 1 3.8358 3.1238 -0.8894 39 1 4.7275 4.8101 -0.1163 40 1 6.0304 5.4121 0.9409 41 1 6.0784 5.2599 -2.1086 42 1 6.0028 6.7386 -1.1197 43 1 9.3778 6.2097 -2.4297 44 1 7.4705 8.3022 -1.6100 45 1 9.1052 8.1055 -0.9336 46 1 8.8971 10.5447 -2.0592 47 1 9.5298 13.7689 -2.6459 48 1 10.3467 3.2981 -1.1734 49 1 10.3586 4.9058 -1.9370 50 1 10.2880 4.7632 -0.1643 51 1 8.2838 3.8616 0.9372 52 1 8.1850 2.4313 -0.1219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715419960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:08 Heat of formation + Delta-G solvation = -153.227214 kcal Electronic energy + Delta-G solvation = -29723.617120 eV Core-core repulsion = 25528.584520 eV Total energy + Delta-G solvation = -4195.032600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.41976 -40.21609 -39.25321 -38.75647 -36.36383 -35.80130 -34.80823 -33.87280 -33.23651 -32.00937 -29.35004 -28.42115 -27.65278 -26.58775 -26.02001 -24.49282 -23.16238 -22.74888 -21.26051 -20.93593 -19.97992 -19.82451 -18.29435 -17.80763 -17.40265 -17.33027 -17.01140 -16.64089 -16.52339 -16.30564 -16.09947 -15.81297 -15.57302 -15.45144 -15.04017 -14.90540 -14.69178 -14.20693 -14.10151 -13.88632 -13.63962 -13.47477 -13.34241 -13.20199 -13.00527 -12.93143 -12.86936 -12.74862 -12.59471 -12.40384 -12.25309 -12.11596 -11.97634 -11.94289 -11.87607 -11.77111 -11.50903 -11.27692 -10.81261 -10.59267 -10.32568 -10.00532 -9.67004 -9.29590 -8.46473 -5.94835 1.36766 1.42467 1.56199 1.61746 1.96635 2.06326 2.29575 2.86077 2.92377 3.21106 3.47496 3.53319 3.72913 3.81646 3.90363 3.99605 4.15027 4.19958 4.26505 4.30338 4.33601 4.42939 4.47371 4.48177 4.53093 4.53828 4.54744 4.59189 4.60834 4.66424 4.68354 4.77147 4.77769 4.84747 4.88035 4.91443 5.07614 5.12541 5.17185 5.24658 5.26912 5.39821 5.42369 5.54543 5.93100 6.15956 6.26953 6.41343 6.42879 6.61222 7.13703 7.16587 7.57433 8.13136 8.71000 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.001739 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.750829 B =16101.961742 C =17060.270530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.061 3.939 4 C -0.101 4.101 5 C -0.129 4.129 6 C 0.509 3.491 7 O -0.590 6.590 8 N -0.611 5.611 9 C 0.108 3.892 10 C -0.124 4.124 11 C 0.093 3.907 12 H 0.059 0.941 13 N -0.682 5.682 14 C 0.067 3.933 15 C 0.437 3.563 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.098 4.098 27 H 0.062 0.938 28 C -0.150 4.150 29 C 0.122 3.878 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.344 0.656 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.068 0.932 49 H 0.050 0.950 50 H 0.068 0.932 51 H 0.084 0.916 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.362 -17.017 13.173 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.015 4.015 4 C -0.139 4.139 5 C -0.168 4.168 6 C 0.299 3.701 7 O -0.471 6.471 8 N -0.343 5.343 9 C -0.014 4.014 10 C -0.162 4.162 11 C -0.016 4.016 12 H 0.077 0.923 13 N -0.317 5.317 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.118 4.118 27 H 0.080 0.920 28 C -0.208 4.208 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.166 0.834 44 H 0.125 0.875 45 H 0.083 0.917 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.102 0.898 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.338 -17.866 12.222 26.530 hybrid contribution 1.116 1.035 -0.022 1.523 sum -14.222 -16.830 12.200 25.187 Atomic orbital electron populations 1.22916 0.79384 1.03670 1.01056 1.87846 1.21609 1.29401 1.95678 1.22615 0.92703 0.84353 1.01827 1.21153 0.93571 0.96377 1.02804 1.21605 0.89195 0.98944 1.07083 1.21251 0.91003 0.83181 0.74634 1.90689 1.76082 1.28152 1.52151 1.48267 1.06618 1.06961 1.72455 1.22036 0.99465 0.80770 0.99090 1.21943 0.94139 1.01310 0.98852 1.21626 0.95642 0.92007 0.92360 0.92282 1.60187 1.31319 1.00822 1.39333 1.21573 1.02165 0.88951 0.93818 1.20954 0.83564 0.82731 0.90330 1.90496 1.55822 1.70597 1.34302 1.41925 1.56121 1.05761 1.17161 1.19690 1.39655 0.90126 0.96901 0.90507 1.25991 0.97469 0.97177 1.00440 1.69668 1.47779 1.10845 1.27665 0.84897 0.78158 0.77783 0.77657 1.19982 1.19583 1.19611 1.21515 0.96224 0.95049 0.98972 0.91996 1.21821 0.94002 1.02743 1.02274 1.21562 0.79554 1.00841 0.98132 0.92787 0.93082 0.89051 0.91212 0.91767 0.92829 0.92234 0.85435 0.86338 0.86546 0.89051 0.92266 0.89660 0.83436 0.87483 0.91670 0.76905 0.91304 0.91329 0.93076 0.91282 0.89800 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.43 -7.43 10.70 -148.98 -1.59 -9.02 16 3 C 0.06 0.75 5.94 71.98 0.43 1.18 16 4 C -0.10 -1.61 4.87 30.60 0.15 -1.46 16 5 C -0.13 -1.46 4.05 29.85 0.12 -1.34 16 6 C 0.51 10.08 7.70 87.66 0.67 10.75 16 7 O -0.59 -17.22 15.40 -3.05 -0.05 -17.27 16 8 N -0.61 -10.26 2.97 -818.99 -2.43 -12.69 16 9 C 0.11 1.20 6.34 86.36 0.55 1.74 16 10 C -0.12 -2.12 5.59 30.67 0.17 -1.94 16 11 C 0.09 1.94 1.95 44.94 0.09 2.03 16 12 H 0.06 1.09 7.80 -2.39 -0.02 1.08 16 13 N -0.68 -20.38 5.93 -495.43 -2.94 -23.31 16 14 C 0.07 2.16 5.96 85.56 0.51 2.67 16 15 C 0.44 20.32 7.82 87.66 0.69 21.00 16 16 O -0.63 -34.51 15.78 -3.05 -0.05 -34.56 16 17 N -0.57 -28.76 5.29 -306.98 -1.62 -30.38 16 18 C -0.33 -18.81 9.68 84.04 0.81 -17.99 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 21 N -0.92 -48.62 13.05 21.66 0.28 -48.34 16 22 Si 0.99 42.50 29.55 68.60 2.03 44.53 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 26 C -0.10 -2.00 2.55 -10.73 -0.03 -2.03 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 28 C -0.15 -2.94 8.94 71.98 0.64 -2.30 16 29 C 0.12 2.27 5.71 86.35 0.49 2.76 16 30 H 0.05 0.39 8.14 -2.38 -0.02 0.38 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 36 H 0.06 1.15 8.10 -2.39 -0.02 1.14 16 37 H 0.13 0.66 7.94 -2.39 -0.02 0.64 16 38 H 0.12 0.89 7.69 -2.39 -0.02 0.87 16 39 H 0.12 0.64 5.93 -2.38 -0.01 0.63 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.39 7.42 -2.39 -0.02 1.37 16 43 H 0.34 11.20 5.79 -89.69 -0.52 10.68 16 44 H 0.11 2.99 7.41 -2.39 -0.02 2.98 16 45 H 0.07 1.83 8.06 -2.38 -0.02 1.81 16 46 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 47 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 48 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.05 1.18 6.17 -2.39 -0.01 1.17 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.08 1.73 7.01 -2.39 -0.02 1.71 16 Total: -1.00 -76.48 413.95 0.31 -76.17 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.33 Total: 38.39 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 7.01 Total: 16.48 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -6.71 Total: -114.72 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -1.69 Total: -60.85 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -76.48 0.31 -76.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715419960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.055 kcal (2) G-P(sol) polarization free energy of solvation -76.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds