Wall clock time and date at job start Wed Apr 1 2020 00:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.48919 * 2 1 4 4 C 1.53087 * 109.48164 * 239.97034 * 2 1 3 5 5 C 1.53186 * 109.16665 * 182.40507 * 4 2 1 6 6 H 1.08997 * 109.61570 * 297.07636 * 5 4 2 7 7 C 1.50697 * 109.54524 * 176.84828 * 5 4 2 8 8 O 1.21281 * 120.00000 * 0.44226 * 7 5 4 9 9 N 1.34774 * 119.99805 * 180.44566 * 7 5 4 10 10 C 1.46502 * 120.00351 * 0.02562 * 9 7 5 11 11 C 1.46500 * 119.99823 * 180.02562 * 9 7 5 12 12 C 1.52996 * 109.47106 * 90.00266 * 11 9 7 13 13 N 1.46895 * 109.46953 * 179.97438 * 12 11 9 14 14 C 1.46896 * 111.00401 * 66.04584 * 13 12 11 15 15 C 1.46904 * 111.00021 * 190.00055 * 13 12 11 16 16 C 1.50704 * 109.47270 * 170.00091 * 15 13 12 17 17 O 1.21285 * 120.00024 * 359.97438 * 16 15 13 18 18 N 1.34776 * 119.99957 * 179.97438 * 16 15 13 19 19 C 1.37098 * 120.00171 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99371 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00064 * 180.02562 * 19 18 16 22 22 N 1.31419 * 119.99683 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00074 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46589 * 90.00721 * 23 21 19 25 25 H 1.48499 * 109.47245 * 210.00401 * 23 21 19 26 26 H 1.48495 * 109.47386 * 330.00595 * 23 21 19 27 27 C 1.53181 * 109.02951 * 56.98173 * 5 4 2 28 28 C 1.53090 * 109.16481 * 303.01710 * 27 5 4 29 29 O 1.42905 * 109.48279 * 120.02568 * 2 1 3 30 30 H 1.08999 * 109.47282 * 299.97065 * 1 2 3 31 31 H 1.09000 * 109.47337 * 59.97306 * 1 2 3 32 32 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.52122 * 62.50272 * 4 2 1 34 34 H 1.08996 * 109.52817 * 302.31359 * 4 2 1 35 35 H 1.09000 * 109.47340 * 89.99177 * 10 9 7 36 36 H 1.08988 * 109.47480 * 210.00114 * 10 9 7 37 37 H 1.09003 * 109.46892 * 330.00280 * 10 9 7 38 38 H 1.09004 * 109.46764 * 210.00406 * 11 9 7 39 39 H 1.09004 * 109.47117 * 329.99709 * 11 9 7 40 40 H 1.09000 * 109.46939 * 299.99821 * 12 11 9 41 41 H 1.08995 * 109.47125 * 60.00093 * 12 11 9 42 42 H 1.09002 * 109.47142 * 59.99705 * 14 13 12 43 43 H 1.09003 * 109.47475 * 180.02562 * 14 13 12 44 44 H 1.09007 * 109.46803 * 299.99822 * 14 13 12 45 45 H 1.09005 * 109.46763 * 289.99804 * 15 13 12 46 46 H 1.08998 * 109.47135 * 49.99553 * 15 13 12 47 47 H 0.97004 * 119.99865 * 0.02562 * 18 16 15 48 48 H 0.97002 * 119.99345 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.52008 * 183.11801 * 27 5 4 50 50 H 1.08997 * 109.57581 * 62.96132 * 27 5 4 51 51 H 1.08998 * 109.48371 * 297.63244 * 28 27 5 52 52 H 1.09004 * 109.48242 * 177.59100 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7708 -1.2122 6 1 3.9702 0.2430 -1.2415 7 6 4.0800 -1.5475 -2.3991 8 8 3.2973 -2.0101 -3.2019 9 7 5.4048 -1.7282 -2.5684 10 6 6.3501 -1.1700 -1.5984 11 6 5.8995 -2.4828 -3.7226 12 6 6.1398 -1.5263 -4.8923 13 7 6.6365 -2.2829 -6.0493 14 6 5.6103 -3.2037 -6.5561 15 6 7.1020 -1.3785 -7.1093 16 6 7.8240 -2.1733 -8.1666 17 8 7.9399 -3.3748 -8.0486 18 7 8.3410 -1.5490 -9.2434 19 6 8.9983 -2.2719 -10.2051 20 1 9.1014 -3.3418 -10.0999 21 6 9.5317 -1.6282 -11.3148 22 7 10.1614 -2.3213 -12.2369 23 14 9.3526 0.2222 -11.4969 24 1 10.5115 0.8968 -10.8586 25 1 9.3066 0.5757 -12.9385 26 1 8.0976 0.6653 -10.8384 27 6 4.0176 -1.4600 0.0809 28 6 3.4307 -0.7092 1.2791 29 8 2.0065 -0.6741 1.1664 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7148 -0.1843 -2.1398 34 1 1.6443 -1.7374 -1.2709 35 1 6.5360 -1.9001 -0.8107 36 1 7.2874 -0.9308 -2.1007 37 1 5.9302 -0.2637 -1.1620 38 1 6.8345 -2.9774 -3.4595 39 1 5.1612 -3.2312 -4.0109 40 1 5.2048 -1.0318 -5.1552 41 1 6.8781 -0.7780 -4.6039 42 1 4.7312 -2.6359 -6.8610 43 1 6.0044 -3.7515 -7.4122 44 1 5.3339 -3.9074 -5.7709 45 1 6.2465 -0.8720 -7.5563 46 1 7.7804 -0.6390 -6.6839 47 1 8.2486 -0.5879 -9.3376 48 1 10.5334 -1.8719 -13.0118 49 1 5.1059 -1.4497 0.1421 50 1 3.6622 -2.4904 0.0870 51 1 3.8192 0.3090 1.2958 52 1 3.7099 -1.2202 2.2005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715533193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:17 Heat of formation + Delta-G solvation = -102.097669 kcal Electronic energy + Delta-G solvation = -30286.234390 eV Core-core repulsion = 26093.418934 eV Total energy + Delta-G solvation = -4192.815457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.94678 -39.25568 -38.70320 -36.87487 -35.66587 -34.19437 -33.85005 -33.19801 -31.67018 -30.09538 -28.45113 -27.86331 -27.05880 -25.94087 -24.82457 -23.65512 -22.91622 -21.38018 -20.74925 -19.46238 -19.27835 -18.23567 -17.43385 -16.81994 -16.68169 -16.40548 -16.01723 -15.69381 -15.33050 -15.07918 -14.84293 -14.66722 -14.55169 -14.18844 -14.01932 -13.72032 -13.37412 -13.16500 -13.07479 -12.96461 -12.92087 -12.81779 -12.66016 -12.42841 -12.15553 -12.09109 -11.93198 -11.76267 -11.58219 -11.45474 -11.30909 -11.18161 -11.01799 -10.87643 -10.83079 -10.59564 -10.24961 -9.97226 -9.74704 -9.53199 -9.03255 -8.53493 -8.17266 -7.96343 -6.30425 -3.81641 2.32374 2.62221 3.02758 3.06675 3.14958 3.30977 3.74821 3.95467 4.06601 4.10823 4.14649 4.27669 4.42956 4.57848 4.67273 4.73765 4.78119 4.86680 4.89269 4.90857 4.99629 5.02162 5.11684 5.16547 5.20953 5.23175 5.27255 5.33090 5.44085 5.45711 5.52061 5.53775 5.63645 5.67472 5.70844 5.75466 5.84052 5.86432 5.88047 5.95294 5.99687 6.22214 6.55448 6.78523 7.05590 7.16004 7.29923 7.59446 7.88793 8.15546 8.61247 8.96166 9.43353 9.84636 10.82733 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025105 B = 0.001801 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.062003 B =15545.278384 C =15754.690676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.058 0.942 4 C -0.129 4.129 5 C -0.108 4.108 6 H 0.097 0.903 7 C 0.517 3.483 8 O -0.532 6.532 9 N -0.615 5.615 10 C 0.074 3.926 11 C 0.117 3.883 12 C 0.042 3.958 13 N -0.516 5.516 14 C 0.020 3.980 15 C 0.044 3.956 16 C 0.454 3.546 17 O -0.558 6.558 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.159 4.159 28 C 0.065 3.935 29 O -0.380 6.380 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.016 0.984 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.089 0.911 50 H 0.078 0.922 51 H 0.052 0.948 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.824 9.702 28.629 33.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.076 0.924 4 C -0.168 4.168 5 C -0.129 4.129 6 H 0.115 0.885 7 C 0.305 3.695 8 O -0.408 6.408 9 N -0.348 5.348 10 C -0.069 4.069 11 C -0.005 4.005 12 C -0.087 4.087 13 N -0.240 5.240 14 C -0.128 4.128 15 C -0.087 4.087 16 C 0.239 3.761 17 O -0.440 6.440 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.197 4.197 28 C -0.012 4.012 29 O -0.299 6.299 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.035 0.965 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.108 0.892 50 H 0.096 0.904 51 H 0.070 0.930 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.763 8.249 28.348 32.574 hybrid contribution -0.297 2.227 -0.857 2.404 sum -14.060 10.475 27.492 32.607 Atomic orbital electron populations 1.21758 0.92746 1.03220 1.02510 1.22133 0.95413 0.94805 0.84756 0.92395 1.22069 0.92850 1.03271 0.98563 1.21367 0.97789 1.00134 0.93627 0.88516 1.20585 0.81884 0.80345 0.86691 1.90723 1.55190 1.49448 1.45435 1.47850 1.05934 1.55194 1.25848 1.22005 0.93781 0.98563 0.92587 1.21494 1.00797 0.93944 0.84298 1.22424 0.98706 0.95990 0.91582 1.61523 1.37846 1.18378 1.06282 1.22595 0.91836 0.96201 1.02140 1.21891 0.99121 0.94859 0.92864 1.19620 0.84423 0.88613 0.83401 1.90525 1.61267 1.14387 1.77776 1.42214 1.51712 1.08710 1.20512 1.19428 1.30137 0.95476 0.98194 0.86251 1.25034 0.97021 0.98369 0.95771 1.69627 1.36275 1.35809 1.10470 0.86675 0.78617 0.85428 0.78684 1.19622 1.20199 1.19568 1.22480 1.02482 1.01105 0.93625 1.22547 0.81195 0.99474 0.97994 1.87952 1.20823 1.78031 1.43107 0.91774 0.90898 0.91621 0.90143 0.90030 0.92001 0.90501 0.90955 0.89314 0.89467 0.94801 0.91019 0.96504 0.88514 0.91872 0.93380 0.89377 0.79759 0.91645 0.89237 0.90362 0.93004 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.56 37.15 0.36 -0.53 16 2 C 0.09 0.60 3.26 -26.69 -0.09 0.51 16 3 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 4 C -0.13 -1.06 4.01 -26.59 -0.11 -1.17 16 5 C -0.11 -0.80 1.80 -91.58 -0.17 -0.96 16 6 H 0.10 0.55 7.41 -51.93 -0.39 0.17 16 7 C 0.52 5.57 7.08 -10.99 -0.08 5.49 16 8 O -0.53 -7.95 15.55 5.56 0.09 -7.87 16 9 N -0.61 -5.72 2.87 -181.58 -0.52 -6.25 16 10 C 0.07 0.39 8.80 59.85 0.53 0.92 16 11 C 0.12 1.35 5.33 -4.04 -0.02 1.33 16 12 C 0.04 0.55 5.28 -3.83 -0.02 0.53 16 13 N -0.52 -8.50 4.50 -244.37 -1.10 -9.60 16 14 C 0.02 0.34 8.96 60.06 0.54 0.88 16 15 C 0.04 0.76 5.45 -4.97 -0.03 0.74 16 16 C 0.45 10.40 7.47 -10.98 -0.08 10.32 16 17 O -0.56 -14.91 13.91 5.55 0.08 -14.84 16 18 N -0.59 -14.20 5.09 -10.96 -0.06 -14.26 16 19 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 20 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.84 13.96 55.50 0.77 -25.06 16 23 Si 0.88 19.45 27.74 -169.99 -4.71 14.73 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 27 C -0.16 -0.92 5.02 -26.59 -0.13 -1.05 16 28 C 0.06 0.35 6.84 37.20 0.25 0.60 16 29 O -0.38 -3.07 10.41 -35.23 -0.37 -3.44 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 35 H 0.06 0.26 7.02 -51.93 -0.36 -0.11 16 36 H 0.08 0.39 8.07 -51.94 -0.42 -0.03 16 37 H 0.07 0.26 5.98 -51.93 -0.31 -0.05 16 38 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 39 H 0.09 1.18 5.83 -51.93 -0.30 0.88 16 40 H 0.03 0.48 8.12 -51.93 -0.42 0.05 16 41 H 0.07 0.82 7.93 -51.93 -0.41 0.40 16 42 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 1.95 5.83 -51.93 -0.30 1.65 16 44 H 0.06 0.97 6.47 -51.92 -0.34 0.63 16 45 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 46 H 0.09 1.31 7.93 -51.93 -0.41 0.89 16 47 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 48 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 49 H 0.09 0.35 4.64 -51.92 -0.24 0.11 16 50 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 52 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -35.29 403.49 -7.79 -43.08 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.76 Total: 7.56 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 0.71 Total: 9.86 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.90 Total: -55.17 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.20 Total: -26.14 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.29 -7.79 -43.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715533193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.016 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds