Wall clock time and date at job start Wed Apr 1 2020 00:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.48919 * 2 1 4 4 C 1.53087 * 109.48164 * 239.97034 * 2 1 3 5 5 C 1.53186 * 109.16665 * 182.40507 * 4 2 1 6 6 H 1.08997 * 109.61570 * 297.07636 * 5 4 2 7 7 C 1.50697 * 109.54524 * 176.84828 * 5 4 2 8 8 O 1.21281 * 120.00000 * 0.44226 * 7 5 4 9 9 N 1.34774 * 119.99805 * 180.44566 * 7 5 4 10 10 C 1.46502 * 120.00351 * 0.02562 * 9 7 5 11 11 C 1.46500 * 119.99823 * 180.02562 * 9 7 5 12 12 C 1.52996 * 109.47106 * 90.00266 * 11 9 7 13 13 N 1.46895 * 109.46953 * 179.97438 * 12 11 9 14 14 C 1.46896 * 111.00401 * 66.04584 * 13 12 11 15 15 C 1.46904 * 111.00021 * 190.00055 * 13 12 11 16 16 C 1.50704 * 109.47270 * 170.00091 * 15 13 12 17 17 O 1.21285 * 120.00024 * 359.97438 * 16 15 13 18 18 N 1.34776 * 119.99957 * 179.97438 * 16 15 13 19 19 C 1.37098 * 120.00171 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99371 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00064 * 180.02562 * 19 18 16 22 22 N 1.31419 * 119.99683 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00074 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46589 * 90.00721 * 23 21 19 25 25 H 1.48499 * 109.47245 * 210.00401 * 23 21 19 26 26 H 1.48495 * 109.47386 * 330.00595 * 23 21 19 27 27 C 1.53181 * 109.02951 * 56.98173 * 5 4 2 28 28 C 1.53090 * 109.16481 * 303.01710 * 27 5 4 29 29 O 1.42905 * 109.48279 * 120.02568 * 2 1 3 30 30 H 1.08999 * 109.47282 * 299.97065 * 1 2 3 31 31 H 1.09000 * 109.47337 * 59.97306 * 1 2 3 32 32 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.52122 * 62.50272 * 4 2 1 34 34 H 1.08996 * 109.52817 * 302.31359 * 4 2 1 35 35 H 1.09000 * 109.47340 * 89.99177 * 10 9 7 36 36 H 1.08988 * 109.47480 * 210.00114 * 10 9 7 37 37 H 1.09003 * 109.46892 * 330.00280 * 10 9 7 38 38 H 1.09004 * 109.46764 * 210.00406 * 11 9 7 39 39 H 1.09004 * 109.47117 * 329.99709 * 11 9 7 40 40 H 1.09000 * 109.46939 * 299.99821 * 12 11 9 41 41 H 1.08995 * 109.47125 * 60.00093 * 12 11 9 42 42 H 1.09002 * 109.47142 * 59.99705 * 14 13 12 43 43 H 1.09003 * 109.47475 * 180.02562 * 14 13 12 44 44 H 1.09007 * 109.46803 * 299.99822 * 14 13 12 45 45 H 1.09005 * 109.46763 * 289.99804 * 15 13 12 46 46 H 1.08998 * 109.47135 * 49.99553 * 15 13 12 47 47 H 0.97004 * 119.99865 * 0.02562 * 18 16 15 48 48 H 0.97002 * 119.99345 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.52008 * 183.11801 * 27 5 4 50 50 H 1.08997 * 109.57581 * 62.96132 * 27 5 4 51 51 H 1.08998 * 109.48371 * 297.63244 * 28 27 5 52 52 H 1.09004 * 109.48242 * 177.59100 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7708 -1.2122 6 1 3.9702 0.2430 -1.2415 7 6 4.0800 -1.5475 -2.3991 8 8 3.2973 -2.0101 -3.2019 9 7 5.4048 -1.7282 -2.5684 10 6 6.3501 -1.1700 -1.5984 11 6 5.8995 -2.4828 -3.7226 12 6 6.1398 -1.5263 -4.8923 13 7 6.6365 -2.2829 -6.0493 14 6 5.6103 -3.2037 -6.5561 15 6 7.1020 -1.3785 -7.1093 16 6 7.8240 -2.1733 -8.1666 17 8 7.9399 -3.3748 -8.0486 18 7 8.3410 -1.5490 -9.2434 19 6 8.9983 -2.2719 -10.2051 20 1 9.1014 -3.3418 -10.0999 21 6 9.5317 -1.6282 -11.3148 22 7 10.1614 -2.3213 -12.2369 23 14 9.3526 0.2222 -11.4969 24 1 10.5115 0.8968 -10.8586 25 1 9.3066 0.5757 -12.9385 26 1 8.0976 0.6653 -10.8384 27 6 4.0176 -1.4600 0.0809 28 6 3.4307 -0.7092 1.2791 29 8 2.0065 -0.6741 1.1664 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7148 -0.1843 -2.1398 34 1 1.6443 -1.7374 -1.2709 35 1 6.5360 -1.9001 -0.8107 36 1 7.2874 -0.9308 -2.1007 37 1 5.9302 -0.2637 -1.1620 38 1 6.8345 -2.9774 -3.4595 39 1 5.1612 -3.2312 -4.0109 40 1 5.2048 -1.0318 -5.1552 41 1 6.8781 -0.7780 -4.6039 42 1 4.7312 -2.6359 -6.8610 43 1 6.0044 -3.7515 -7.4122 44 1 5.3339 -3.9074 -5.7709 45 1 6.2465 -0.8720 -7.5563 46 1 7.7804 -0.6390 -6.6839 47 1 8.2486 -0.5879 -9.3376 48 1 10.5334 -1.8719 -13.0118 49 1 5.1059 -1.4497 0.1421 50 1 3.6622 -2.4904 0.0870 51 1 3.8192 0.3090 1.2958 52 1 3.7099 -1.2202 2.2005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715533193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:12 Heat of formation + Delta-G solvation = -129.694899 kcal Electronic energy + Delta-G solvation = -30287.431096 eV Core-core repulsion = 26093.418934 eV Total energy + Delta-G solvation = -4194.012162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.64573 -40.54138 -39.79068 -38.17857 -36.61489 -35.89927 -34.77248 -33.76128 -33.69307 -31.13344 -29.31077 -28.95488 -27.72129 -27.10324 -26.17973 -24.73830 -23.51152 -22.41919 -21.40816 -21.27167 -20.27235 -20.02995 -18.16071 -17.89219 -17.49681 -17.24814 -16.92870 -16.84777 -16.59252 -16.33322 -15.98980 -15.62628 -15.46707 -15.37142 -15.01525 -14.86080 -14.63600 -14.34033 -14.27422 -14.01574 -13.81983 -13.70730 -13.48582 -13.37770 -13.21386 -13.10693 -12.98313 -12.65505 -12.59965 -12.52024 -12.41370 -12.36599 -12.07925 -11.98476 -11.87533 -11.68795 -11.47709 -11.40855 -10.92237 -10.43126 -10.36097 -10.23707 -9.73933 -9.32103 -8.41201 -6.01944 1.29854 1.35108 1.44012 1.54004 1.86325 1.94779 2.22830 2.66879 2.87043 3.13758 3.23430 3.41033 3.59744 3.75509 3.88428 3.94515 4.04150 4.07845 4.15702 4.20791 4.30305 4.32334 4.38326 4.44101 4.44760 4.47429 4.52955 4.55496 4.59161 4.66689 4.69478 4.76052 4.79866 4.82722 4.89812 4.91883 4.98904 5.06872 5.13405 5.13867 5.24877 5.31374 5.43809 5.52899 5.83990 5.96087 6.08610 6.33068 6.35408 6.59608 6.88349 7.11249 7.39449 7.96693 8.76414 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025105 B = 0.001801 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.062003 B =15545.278384 C =15754.690676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 H 0.078 0.922 4 C -0.127 4.127 5 C -0.101 4.101 6 H 0.126 0.874 7 C 0.510 3.490 8 O -0.585 6.585 9 N -0.610 5.610 10 C 0.063 3.937 11 C 0.121 3.879 12 C 0.052 3.948 13 N -0.531 5.531 14 C 0.029 3.971 15 C 0.055 3.945 16 C 0.452 3.548 17 O -0.604 6.604 18 N -0.592 5.592 19 C -0.327 4.327 20 H 0.055 0.945 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.965 3.035 24 H -0.254 1.254 25 H -0.276 1.276 26 H -0.234 1.234 27 C -0.153 4.153 28 C 0.060 3.940 29 O -0.402 6.402 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.098 0.902 42 H 0.022 0.978 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.127 0.873 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.114 0.886 50 H 0.055 0.945 51 H 0.075 0.925 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.621 14.211 31.293 36.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.095 0.905 4 C -0.166 4.166 5 C -0.122 4.122 6 H 0.143 0.857 7 C 0.300 3.700 8 O -0.465 6.465 9 N -0.342 5.342 10 C -0.078 4.078 11 C -0.002 4.002 12 C -0.076 4.076 13 N -0.256 5.256 14 C -0.119 4.119 15 C -0.076 4.076 16 C 0.240 3.760 17 O -0.488 6.488 18 N -0.234 5.234 19 C -0.456 4.456 20 H 0.074 0.926 21 C -0.214 4.214 22 N -0.575 5.575 23 Si 0.785 3.215 24 H -0.178 1.178 25 H -0.201 1.201 26 H -0.157 1.157 27 C -0.190 4.190 28 C -0.016 4.016 29 O -0.322 6.322 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.117 0.883 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.144 0.856 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.132 0.868 50 H 0.073 0.927 51 H 0.093 0.907 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.546 12.774 31.073 36.224 hybrid contribution -0.345 0.650 -1.629 1.788 sum -13.891 13.424 29.443 35.215 Atomic orbital electron populations 1.21789 0.92678 1.02618 1.03299 1.22165 0.95636 0.95304 0.83731 0.90463 1.22017 0.93779 1.01649 0.99128 1.21398 0.96972 1.01099 0.92745 0.85658 1.21243 0.81939 0.79891 0.86972 1.90701 1.56620 1.51701 1.47475 1.47922 1.06209 1.54439 1.25622 1.22347 0.93366 0.99888 0.92190 1.21304 1.00332 0.93564 0.85038 1.22428 0.98851 0.96166 0.90197 1.61473 1.38083 1.19021 1.07014 1.22400 0.91945 0.96548 1.01043 1.21844 0.99924 0.94345 0.91498 1.20811 0.82988 0.88541 0.83707 1.90517 1.62498 1.16998 1.78765 1.42027 1.51859 1.09376 1.20098 1.18995 1.32581 0.93431 1.00621 0.92644 1.26114 0.95584 1.05368 0.94357 1.69812 1.37320 1.39002 1.11368 0.85364 0.80652 0.76452 0.79038 1.17847 1.20105 1.15721 1.22470 1.03928 0.99686 0.92929 1.22760 0.79869 1.00855 0.98100 1.87933 1.22586 1.78398 1.43313 0.91102 0.89968 0.92957 0.90912 0.92965 0.90436 0.89542 0.88456 0.88424 0.92212 0.95650 0.88341 0.95969 0.92331 0.90963 0.91103 0.85562 0.77545 0.91167 0.86763 0.92652 0.90716 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.56 71.98 0.69 -1.00 16 2 C 0.09 1.10 3.26 30.62 0.10 1.20 16 3 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 4 C -0.13 -2.02 4.01 30.69 0.12 -1.90 16 5 C -0.10 -1.28 1.80 -11.42 -0.02 -1.30 16 6 H 0.13 0.90 7.41 -2.39 -0.02 0.88 16 7 C 0.51 10.40 7.08 87.66 0.62 11.02 16 8 O -0.59 -17.89 15.55 -3.03 -0.05 -17.94 16 9 N -0.61 -9.94 2.87 -846.77 -2.43 -12.37 16 10 C 0.06 0.41 8.80 127.77 1.12 1.54 16 11 C 0.12 2.62 5.33 86.38 0.46 3.08 16 12 C 0.05 1.21 5.28 86.30 0.46 1.67 16 13 N -0.53 -16.74 4.50 -927.05 -4.17 -20.91 16 14 C 0.03 0.99 8.96 127.69 1.14 2.14 16 15 C 0.06 1.75 5.45 85.56 0.47 2.22 16 16 C 0.45 20.70 7.47 87.66 0.66 21.36 16 17 O -0.60 -33.69 13.91 -3.05 -0.04 -33.73 16 18 N -0.59 -28.14 5.09 -306.99 -1.56 -29.71 16 19 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 20 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 21 C -0.02 -0.88 5.50 84.92 0.47 -0.41 16 22 N -0.93 -56.59 13.96 21.66 0.30 -56.29 16 23 Si 0.97 38.85 27.74 68.60 1.90 40.76 16 24 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 25 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 27 C -0.15 -1.38 5.02 30.68 0.15 -1.22 16 28 C 0.06 0.47 6.84 72.01 0.49 0.96 16 29 O -0.40 -5.81 10.41 -148.98 -1.55 -7.36 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.12 8.03 -2.39 -0.02 1.10 16 35 H 0.08 0.31 7.02 -2.39 -0.02 0.29 16 36 H 0.09 0.47 8.07 -2.39 -0.02 0.45 16 37 H 0.10 0.18 5.98 -2.39 -0.01 0.17 16 38 H 0.10 1.93 8.07 -2.38 -0.02 1.91 16 39 H 0.06 1.64 5.83 -2.38 -0.01 1.62 16 40 H 0.03 0.65 8.12 -2.39 -0.02 0.63 16 41 H 0.10 1.79 7.93 -2.39 -0.02 1.77 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 2.48 5.83 -2.39 -0.01 2.46 16 44 H 0.07 2.30 6.47 -2.38 -0.02 2.29 16 45 H 0.07 2.00 8.12 -2.38 -0.02 1.98 16 46 H 0.13 3.13 7.93 -2.39 -0.02 3.11 16 47 H 0.39 15.29 5.76 -92.71 -0.53 14.76 16 48 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 49 H 0.11 0.44 4.64 -2.38 -0.01 0.42 16 50 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 52 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -85.10 403.49 0.51 -84.59 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.32 Total: 32.05 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 7.79 Total: 20.91 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -7.86 Total: -119.27 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -1.64 Total: -59.03 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.76 kcal Total: -85.10 0.51 -84.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715533193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.101 kcal (2) G-P(sol) polarization free energy of solvation -85.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds