Wall clock time and date at job start Wed Apr 1 2020 00:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.48794 * 2 1 4 4 C 1.53102 * 109.48828 * 120.02819 * 2 1 3 5 5 C 1.53178 * 109.16114 * 177.59537 * 4 2 1 6 6 H 1.09001 * 109.61295 * 183.10679 * 5 4 2 7 7 C 1.50699 * 109.54572 * 62.88738 * 5 4 2 8 8 O 1.21287 * 119.99733 * 357.74087 * 7 5 4 9 9 N 1.34771 * 120.00503 * 177.73615 * 7 5 4 10 10 C 1.46510 * 119.99759 * 354.31237 * 9 7 5 11 11 C 1.46493 * 120.00675 * 174.31267 * 9 7 5 12 12 C 1.53005 * 109.47169 * 89.99658 * 11 9 7 13 13 N 1.46899 * 109.47083 * 180.02562 * 12 11 9 14 14 C 1.46899 * 111.00405 * 293.96205 * 13 12 11 15 15 C 1.46900 * 110.99985 * 169.99864 * 13 12 11 16 16 C 1.50702 * 109.47086 * 190.00422 * 15 13 12 17 17 O 1.21288 * 120.00449 * 0.02562 * 16 15 13 18 18 N 1.34778 * 119.99679 * 180.02562 * 16 15 13 19 19 C 1.37101 * 120.00050 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99441 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00063 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00068 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99939 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47142 * 89.99663 * 23 21 19 25 25 H 1.48500 * 109.47270 * 210.00358 * 23 21 19 26 26 H 1.48503 * 109.47039 * 330.00043 * 23 21 19 27 27 C 1.53177 * 109.03697 * 303.01668 * 5 4 2 28 28 C 1.53090 * 109.16120 * 56.98379 * 27 5 4 29 29 O 1.42902 * 109.41746 * 302.38808 * 28 27 5 30 30 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46756 * 300.02399 * 1 2 3 32 32 H 1.09001 * 109.46628 * 60.02590 * 1 2 3 33 33 H 1.09004 * 109.51840 * 57.68863 * 4 2 1 34 34 H 1.08998 * 109.52131 * 297.50498 * 4 2 1 35 35 H 1.08994 * 109.47425 * 234.52603 * 10 9 7 36 36 H 1.09001 * 109.46797 * 354.52409 * 10 9 7 37 37 H 1.08998 * 109.46684 * 114.52005 * 10 9 7 38 38 H 1.08999 * 109.47564 * 210.00054 * 11 9 7 39 39 H 1.09001 * 109.46838 * 330.00167 * 11 9 7 40 40 H 1.08999 * 109.47200 * 300.00618 * 12 11 9 41 41 H 1.09001 * 109.46825 * 60.00500 * 12 11 9 42 42 H 1.08990 * 109.47339 * 59.99438 * 14 13 12 43 43 H 1.08998 * 109.47188 * 180.02562 * 14 13 12 44 44 H 1.09001 * 109.46440 * 299.99537 * 14 13 12 45 45 H 1.08996 * 109.47370 * 310.00654 * 15 13 12 46 46 H 1.09000 * 109.46679 * 70.00453 * 15 13 12 47 47 H 0.97001 * 119.99927 * 0.02562 * 18 16 15 48 48 H 0.97002 * 119.99652 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.52191 * 176.88559 * 27 5 4 50 50 H 1.09000 * 109.52582 * 297.01058 * 27 5 4 51 51 H 1.09003 * 109.48449 * 62.37338 * 28 27 5 52 52 H 1.09006 * 109.48093 * 182.40310 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0408 -0.7223 1.2496 5 6 3.5713 -0.7707 1.2120 6 1 3.9408 -1.3315 2.0705 7 6 4.1212 0.6319 1.2516 8 8 3.3646 1.5797 1.2633 9 7 5.4537 0.8330 1.2741 10 6 6.3650 -0.3087 1.3859 11 6 5.9909 2.1930 1.1868 12 6 6.1372 2.7750 2.5943 13 7 6.6753 4.1390 2.5067 14 6 8.0494 4.1306 1.9873 15 6 6.6087 4.8159 3.8087 16 6 6.9344 6.2767 3.6328 17 8 7.1959 6.7114 2.5311 18 7 6.9352 7.1002 4.6997 19 6 7.2321 8.4291 4.5398 20 1 7.4649 8.8160 3.5587 21 6 7.2324 9.2781 5.6397 22 7 6.9486 8.8073 6.8333 23 14 7.6361 11.0889 5.4216 24 1 6.3874 11.8453 5.1506 25 1 8.2701 11.6074 6.6604 26 1 8.5720 11.2534 4.2804 27 6 4.0178 -1.4598 -0.0811 28 6 3.4307 -0.7091 -1.2791 29 8 2.0066 -0.6742 -1.1664 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8898 32 1 -0.3632 0.5135 -0.8903 33 1 1.6446 -1.7375 1.2709 34 1 1.7150 -0.1844 2.1399 35 1 7.0340 -0.1580 2.2330 36 1 5.7877 -1.2209 1.5368 37 1 6.9510 -0.3967 0.4711 38 1 6.9662 2.1680 0.7008 39 1 5.3109 2.8156 0.6052 40 1 5.1619 2.8000 3.0803 41 1 6.8171 2.1524 3.1759 42 1 8.0589 3.6866 0.9920 43 1 8.4236 5.1529 1.9331 44 1 8.6854 3.5461 2.6521 45 1 5.6044 4.7145 4.2200 46 1 7.3280 4.3628 4.4909 47 1 6.7265 6.7525 5.5809 48 1 6.9492 9.4000 7.6011 49 1 5.1061 -1.4494 -0.1424 50 1 3.6626 -2.4903 -0.0860 51 1 3.8191 0.3092 -1.2960 52 1 3.7100 -1.2200 -2.2007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715533195.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:49 Heat of formation + Delta-G solvation = -104.892949 kcal Electronic energy + Delta-G solvation = -30763.790332 eV Core-core repulsion = 26570.853663 eV Total energy + Delta-G solvation = -4192.936669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.15501 -38.90750 -38.42610 -36.75517 -35.62482 -34.11167 -33.77653 -32.94774 -31.23014 -29.98830 -28.23905 -27.77223 -26.97344 -25.79009 -24.79841 -23.82104 -22.72626 -21.62336 -20.84816 -19.19993 -18.95395 -17.82162 -17.15620 -16.67578 -16.49186 -16.46504 -16.00914 -15.66236 -15.22355 -14.95698 -14.74521 -14.50620 -14.17732 -14.08401 -13.83211 -13.71898 -13.39197 -13.37362 -13.05898 -12.84765 -12.76305 -12.63437 -12.54184 -12.19540 -12.09737 -11.99148 -11.92777 -11.49422 -11.39662 -11.28730 -11.26271 -11.08355 -10.91584 -10.80584 -10.70897 -10.37710 -10.19812 -10.00241 -9.46372 -9.45210 -8.97887 -8.40384 -7.95666 -7.84021 -6.39442 -3.80097 2.35246 2.66371 3.19625 3.27928 3.33694 3.53926 3.93118 4.03044 4.11195 4.22580 4.30962 4.36967 4.54745 4.59961 4.75321 4.89505 4.91899 4.97642 5.09697 5.11476 5.15562 5.18503 5.23766 5.25528 5.27786 5.35131 5.43529 5.45739 5.47233 5.56401 5.61681 5.65296 5.68453 5.71179 5.82941 5.88574 5.94774 5.97220 6.01291 6.05260 6.26287 6.31736 6.53672 7.03246 7.08830 7.26304 7.40300 7.57464 7.93433 8.08853 8.64446 9.20522 9.57025 10.09016 10.78425 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.001982 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.591453 B =14126.857370 C =14796.378812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.113 4.113 6 H 0.100 0.900 7 C 0.514 3.486 8 O -0.524 6.524 9 N -0.615 5.615 10 C 0.070 3.930 11 C 0.120 3.880 12 C 0.044 3.956 13 N -0.516 5.516 14 C 0.020 3.980 15 C 0.048 3.952 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.153 4.153 28 C 0.061 3.939 29 O -0.382 6.382 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.028 0.972 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.013 0.987 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.049 0.951 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -26.367 -9.785 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.015 3.985 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.134 4.134 6 H 0.118 0.882 7 C 0.302 3.698 8 O -0.399 6.399 9 N -0.349 5.349 10 C -0.073 4.073 11 C -0.003 4.003 12 C -0.085 4.085 13 N -0.240 5.240 14 C -0.128 4.128 15 C -0.083 4.083 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.190 4.190 28 C -0.016 4.016 29 O -0.301 6.301 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.032 0.968 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.102 0.898 51 H 0.067 0.933 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.424 -25.266 -10.803 28.009 hybrid contribution 0.971 0.188 1.552 1.840 sum -4.453 -25.078 -9.251 27.099 Atomic orbital electron populations 1.21735 0.93236 1.02347 1.02601 1.22429 0.95000 0.97127 0.83913 0.89448 1.22014 0.92573 1.01839 1.00117 1.21430 0.97797 0.93957 1.00197 0.88201 1.20668 0.81893 0.91363 0.75899 1.90702 1.56833 1.43880 1.48526 1.47855 1.05882 1.07689 1.73483 1.22000 0.94253 0.88886 1.02146 1.21465 0.99922 0.81355 0.97527 1.22414 1.00218 0.89138 0.96753 1.61453 1.22103 1.14667 1.25756 1.22593 0.87609 1.04318 0.98252 1.21850 1.01841 0.94752 0.89895 1.19716 0.84630 0.87049 0.85549 1.90479 1.53722 1.76877 1.25020 1.41869 1.61119 1.08627 1.08560 1.19697 1.43656 0.83332 0.96022 0.87909 1.25261 0.97497 1.00575 0.94692 1.69615 1.49200 1.36658 0.98940 0.85855 0.78718 0.82015 0.77681 1.20388 1.20978 1.19442 1.22366 1.01916 1.00659 0.94098 1.22506 0.81736 0.99552 0.97806 1.87896 1.20317 1.78234 1.43694 0.92279 0.90989 0.91930 0.90573 0.90075 0.91680 0.90025 0.91897 0.90352 0.88818 0.90556 0.95362 0.92192 0.88467 0.96842 0.89422 0.93554 0.77512 0.91912 0.89830 0.89813 0.93289 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.57 37.16 0.36 -0.91 16 2 C 0.07 0.76 2.98 -26.68 -0.08 0.68 16 3 H 0.09 1.15 5.72 -51.93 -0.30 0.85 16 4 C -0.13 -1.11 4.57 -26.59 -0.12 -1.23 16 5 C -0.11 -0.87 2.19 -91.59 -0.20 -1.07 16 6 H 0.10 0.58 7.30 -51.93 -0.38 0.20 16 7 C 0.51 5.62 5.70 -10.99 -0.06 5.56 16 8 O -0.52 -7.83 13.40 5.55 0.07 -7.76 16 9 N -0.62 -5.86 2.87 -181.57 -0.52 -6.38 16 10 C 0.07 0.39 9.07 59.85 0.54 0.94 16 11 C 0.12 1.42 5.33 -4.04 -0.02 1.40 16 12 C 0.04 0.60 5.28 -3.82 -0.02 0.58 16 13 N -0.52 -8.89 4.50 -244.38 -1.10 -9.99 16 14 C 0.02 0.32 8.96 60.06 0.54 0.86 16 15 C 0.05 0.90 5.45 -4.98 -0.03 0.87 16 16 C 0.45 10.75 7.47 -10.98 -0.08 10.67 16 17 O -0.58 -15.75 13.91 5.55 0.08 -15.67 16 18 N -0.56 -14.60 5.29 -10.96 -0.06 -14.65 16 19 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 23 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C -0.15 -0.95 5.21 -26.59 -0.14 -1.09 16 28 C 0.06 0.52 6.62 37.20 0.25 0.76 16 29 O -0.38 -4.14 10.41 -35.23 -0.37 -4.50 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.75 8.06 -51.93 -0.42 0.34 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.31 4.83 -51.93 -0.25 0.06 16 37 H 0.06 0.28 8.07 -51.93 -0.42 -0.14 16 38 H 0.08 0.81 6.48 -51.93 -0.34 0.47 16 39 H 0.09 1.36 7.51 -51.93 -0.39 0.97 16 40 H 0.08 1.15 7.93 -51.93 -0.41 0.73 16 41 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 42 H 0.06 0.81 6.47 -51.93 -0.34 0.48 16 43 H 0.10 1.92 5.82 -51.93 -0.30 1.61 16 44 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.09 1.54 7.93 -51.93 -0.41 1.13 16 46 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 47 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.08 0.38 5.52 -51.93 -0.29 0.10 16 50 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.05 0.49 7.38 -51.93 -0.38 0.11 16 52 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 401.64 15.07 6.05 6.05 Total: -1.00 -33.96 401.64 -8.13 -42.09 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -8.68 Total: 8.72 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 0.69 Total: 9.96 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.95 Total: -55.17 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.22 Total: -27.93 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.96 -8.13 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715533195.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.804 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds