Wall clock time and date at job start Wed Apr 1 2020 00:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.48794 * 2 1 4 4 C 1.53102 * 109.48828 * 120.02819 * 2 1 3 5 5 C 1.53178 * 109.16114 * 177.59537 * 4 2 1 6 6 H 1.09001 * 109.61295 * 183.10679 * 5 4 2 7 7 C 1.50699 * 109.54572 * 62.88738 * 5 4 2 8 8 O 1.21287 * 119.99733 * 357.74087 * 7 5 4 9 9 N 1.34771 * 120.00503 * 177.73615 * 7 5 4 10 10 C 1.46510 * 119.99759 * 354.31237 * 9 7 5 11 11 C 1.46493 * 120.00675 * 174.31267 * 9 7 5 12 12 C 1.53005 * 109.47169 * 89.99658 * 11 9 7 13 13 N 1.46899 * 109.47083 * 180.02562 * 12 11 9 14 14 C 1.46899 * 111.00405 * 293.96205 * 13 12 11 15 15 C 1.46900 * 110.99985 * 169.99864 * 13 12 11 16 16 C 1.50702 * 109.47086 * 190.00422 * 15 13 12 17 17 O 1.21288 * 120.00449 * 0.02562 * 16 15 13 18 18 N 1.34778 * 119.99679 * 180.02562 * 16 15 13 19 19 C 1.37101 * 120.00050 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99441 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00063 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00068 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99939 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47142 * 89.99663 * 23 21 19 25 25 H 1.48500 * 109.47270 * 210.00358 * 23 21 19 26 26 H 1.48503 * 109.47039 * 330.00043 * 23 21 19 27 27 C 1.53177 * 109.03697 * 303.01668 * 5 4 2 28 28 C 1.53090 * 109.16120 * 56.98379 * 27 5 4 29 29 O 1.42902 * 109.41746 * 302.38808 * 28 27 5 30 30 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46756 * 300.02399 * 1 2 3 32 32 H 1.09001 * 109.46628 * 60.02590 * 1 2 3 33 33 H 1.09004 * 109.51840 * 57.68863 * 4 2 1 34 34 H 1.08998 * 109.52131 * 297.50498 * 4 2 1 35 35 H 1.08994 * 109.47425 * 234.52603 * 10 9 7 36 36 H 1.09001 * 109.46797 * 354.52409 * 10 9 7 37 37 H 1.08998 * 109.46684 * 114.52005 * 10 9 7 38 38 H 1.08999 * 109.47564 * 210.00054 * 11 9 7 39 39 H 1.09001 * 109.46838 * 330.00167 * 11 9 7 40 40 H 1.08999 * 109.47200 * 300.00618 * 12 11 9 41 41 H 1.09001 * 109.46825 * 60.00500 * 12 11 9 42 42 H 1.08990 * 109.47339 * 59.99438 * 14 13 12 43 43 H 1.08998 * 109.47188 * 180.02562 * 14 13 12 44 44 H 1.09001 * 109.46440 * 299.99537 * 14 13 12 45 45 H 1.08996 * 109.47370 * 310.00654 * 15 13 12 46 46 H 1.09000 * 109.46679 * 70.00453 * 15 13 12 47 47 H 0.97001 * 119.99927 * 0.02562 * 18 16 15 48 48 H 0.97002 * 119.99652 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.52191 * 176.88559 * 27 5 4 50 50 H 1.09000 * 109.52582 * 297.01058 * 27 5 4 51 51 H 1.09003 * 109.48449 * 62.37338 * 28 27 5 52 52 H 1.09006 * 109.48093 * 182.40310 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0408 -0.7223 1.2496 5 6 3.5713 -0.7707 1.2120 6 1 3.9408 -1.3315 2.0705 7 6 4.1212 0.6319 1.2516 8 8 3.3646 1.5797 1.2633 9 7 5.4537 0.8330 1.2741 10 6 6.3650 -0.3087 1.3859 11 6 5.9909 2.1930 1.1868 12 6 6.1372 2.7750 2.5943 13 7 6.6753 4.1390 2.5067 14 6 8.0494 4.1306 1.9873 15 6 6.6087 4.8159 3.8087 16 6 6.9344 6.2767 3.6328 17 8 7.1959 6.7114 2.5311 18 7 6.9352 7.1002 4.6997 19 6 7.2321 8.4291 4.5398 20 1 7.4649 8.8160 3.5587 21 6 7.2324 9.2781 5.6397 22 7 6.9486 8.8073 6.8333 23 14 7.6361 11.0889 5.4216 24 1 6.3874 11.8453 5.1506 25 1 8.2701 11.6074 6.6604 26 1 8.5720 11.2534 4.2804 27 6 4.0178 -1.4598 -0.0811 28 6 3.4307 -0.7091 -1.2791 29 8 2.0066 -0.6742 -1.1664 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8898 32 1 -0.3632 0.5135 -0.8903 33 1 1.6446 -1.7375 1.2709 34 1 1.7150 -0.1844 2.1399 35 1 7.0340 -0.1580 2.2330 36 1 5.7877 -1.2209 1.5368 37 1 6.9510 -0.3967 0.4711 38 1 6.9662 2.1680 0.7008 39 1 5.3109 2.8156 0.6052 40 1 5.1619 2.8000 3.0803 41 1 6.8171 2.1524 3.1759 42 1 8.0589 3.6866 0.9920 43 1 8.4236 5.1529 1.9331 44 1 8.6854 3.5461 2.6521 45 1 5.6044 4.7145 4.2200 46 1 7.3280 4.3628 4.4909 47 1 6.7265 6.7525 5.5809 48 1 6.9492 9.4000 7.6011 49 1 5.1061 -1.4494 -0.1424 50 1 3.6626 -2.4903 -0.0860 51 1 3.8191 0.3092 -1.2960 52 1 3.7100 -1.2200 -2.2007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715533195.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:43 Heat of formation + Delta-G solvation = -130.385786 kcal Electronic energy + Delta-G solvation = -30764.895784 eV Core-core repulsion = 26570.853663 eV Total energy + Delta-G solvation = -4194.042122 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.90433 -40.43210 -39.49786 -38.09494 -36.60407 -35.86726 -34.77169 -33.65174 -33.30078 -31.07624 -29.21030 -28.89020 -27.64262 -27.12334 -26.18022 -24.90780 -23.49768 -22.61072 -21.80605 -21.02696 -19.90789 -19.72233 -17.93636 -17.91780 -17.41486 -17.22306 -17.09292 -16.69584 -16.55286 -16.39252 -16.14600 -15.68711 -15.47706 -15.30891 -14.97600 -14.77647 -14.59175 -14.27153 -14.05924 -13.78795 -13.61906 -13.47508 -13.41983 -13.32639 -13.25455 -13.04499 -13.00781 -12.85452 -12.62723 -12.55235 -12.48403 -12.42619 -12.12856 -12.03460 -11.88974 -11.69115 -11.47613 -11.45811 -10.75726 -10.36266 -10.21898 -10.02020 -9.71589 -9.23153 -8.47720 -5.96554 1.36887 1.40352 1.53239 1.56842 1.88949 2.02935 2.28319 2.82876 2.85151 3.18727 3.39424 3.44244 3.63521 3.77650 3.88214 3.95514 4.01663 4.10105 4.18789 4.26222 4.30970 4.33822 4.40656 4.43386 4.47134 4.52906 4.58931 4.62889 4.64493 4.68435 4.70165 4.78165 4.80746 4.83771 4.89521 4.93653 4.98841 5.06084 5.10720 5.19477 5.23045 5.28523 5.39697 5.47043 5.83386 6.04099 6.16822 6.30315 6.37779 6.59065 7.11446 7.15701 7.54284 8.10161 8.69850 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.001982 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.591453 B =14126.857370 C =14796.378812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.069 3.931 3 H 0.052 0.948 4 C -0.125 4.125 5 C -0.108 4.108 6 H 0.131 0.869 7 C 0.506 3.494 8 O -0.575 6.575 9 N -0.612 5.612 10 C 0.061 3.939 11 C 0.127 3.873 12 C 0.054 3.946 13 N -0.541 5.541 14 C 0.026 3.974 15 C 0.061 3.939 16 C 0.442 3.558 17 O -0.613 6.613 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.272 1.272 27 C -0.143 4.143 28 C 0.052 3.948 29 O -0.397 6.397 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.035 0.965 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.023 0.977 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.772 -29.285 -9.308 30.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.012 3.988 3 H 0.070 0.930 4 C -0.163 4.163 5 C -0.129 4.129 6 H 0.149 0.851 7 C 0.295 3.705 8 O -0.455 6.455 9 N -0.344 5.344 10 C -0.080 4.080 11 C 0.004 3.996 12 C -0.074 4.074 13 N -0.266 5.266 14 C -0.121 4.121 15 C -0.071 4.071 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.180 4.180 28 C -0.025 4.025 29 O -0.317 6.317 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.116 0.884 46 H 0.089 0.911 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.125 0.875 50 H 0.123 0.877 51 H 0.042 0.958 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.393 -28.240 -10.314 30.384 hybrid contribution 0.657 1.064 1.335 1.829 sum -3.736 -27.176 -8.978 28.864 Atomic orbital electron populations 1.21737 0.92465 1.03145 1.02422 1.22364 0.95762 0.95650 0.85022 0.93050 1.21988 0.93582 1.02388 0.98386 1.21512 0.96922 0.92114 1.02366 0.85088 1.21360 0.82002 0.92260 0.74839 1.90693 1.58216 1.45737 1.50841 1.47935 1.06131 1.07764 1.72598 1.22330 0.94154 0.87992 1.03513 1.21232 0.99996 0.82415 0.95990 1.22351 0.99455 0.87525 0.98102 1.61382 1.23149 1.16981 1.25048 1.22478 0.87202 1.02267 1.00180 1.21691 1.02924 0.91004 0.91455 1.20704 0.82760 0.89133 0.84495 1.90456 1.54816 1.78235 1.26367 1.41940 1.61769 1.08307 1.09196 1.19661 1.45919 0.84971 0.95594 0.90289 1.26062 0.96684 1.04526 0.94140 1.69677 1.48973 1.38167 0.99421 0.84914 0.78571 0.76797 0.77964 1.19786 1.19389 1.19664 1.22368 1.03163 1.00863 0.91655 1.22708 0.80723 0.98880 1.00147 1.87868 1.21823 1.78013 1.44010 0.90869 0.90675 0.92687 0.88433 0.91238 0.90829 0.87724 0.90085 0.88324 0.92390 0.92346 0.92890 0.89797 0.92634 0.94615 0.88388 0.91121 0.77090 0.91294 0.87546 0.87676 0.95819 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.57 71.98 0.69 -1.85 16 2 C 0.07 1.49 2.98 30.63 0.09 1.58 16 3 H 0.05 1.48 5.72 -2.39 -0.01 1.47 16 4 C -0.13 -2.03 4.57 30.69 0.14 -1.89 16 5 C -0.11 -1.42 2.19 -11.42 -0.02 -1.44 16 6 H 0.13 0.94 7.30 -2.39 -0.02 0.92 16 7 C 0.51 10.72 5.70 87.66 0.50 11.22 16 8 O -0.58 -18.14 13.40 -3.05 -0.04 -18.18 16 9 N -0.61 -10.50 2.87 -846.75 -2.43 -12.94 16 10 C 0.06 0.43 9.07 127.77 1.16 1.59 16 11 C 0.13 2.90 5.33 86.38 0.46 3.36 16 12 C 0.05 1.42 5.28 86.31 0.46 1.88 16 13 N -0.54 -18.42 4.50 -927.07 -4.17 -22.59 16 14 C 0.03 0.82 8.96 127.69 1.14 1.96 16 15 C 0.06 2.24 5.45 85.56 0.47 2.71 16 16 C 0.44 21.90 7.47 87.66 0.66 22.55 16 17 O -0.61 -34.79 13.91 -3.05 -0.04 -34.83 16 18 N -0.57 -30.49 5.29 -306.98 -1.62 -32.12 16 19 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 20 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 21 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 22 N -0.92 -50.69 13.05 21.66 0.28 -50.41 16 23 Si 0.99 43.78 29.55 68.60 2.03 45.81 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C -0.14 -1.30 5.21 30.68 0.16 -1.14 16 28 C 0.05 0.82 6.62 72.01 0.48 1.29 16 29 O -0.40 -8.46 10.41 -148.98 -1.55 -10.01 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.28 8.06 -2.39 -0.02 1.26 16 35 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.10 0.27 4.83 -2.39 -0.01 0.26 16 37 H 0.08 0.34 8.07 -2.39 -0.02 0.32 16 38 H 0.10 1.82 6.48 -2.39 -0.02 1.80 16 39 H 0.06 1.75 7.51 -2.39 -0.02 1.73 16 40 H 0.06 1.74 7.93 -2.39 -0.02 1.72 16 41 H 0.05 1.14 8.12 -2.39 -0.02 1.12 16 42 H 0.08 2.15 6.47 -2.39 -0.02 2.13 16 43 H 0.05 2.22 5.82 -2.39 -0.01 2.21 16 44 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.10 3.42 7.93 -2.39 -0.02 3.40 16 46 H 0.07 2.28 8.12 -2.39 -0.02 2.27 16 47 H 0.40 19.96 7.90 -92.71 -0.73 19.23 16 48 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.11 0.49 5.52 -2.39 -0.01 0.48 16 50 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.02 0.48 7.38 -2.39 -0.02 0.47 16 52 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -78.41 401.64 0.29 -78.12 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.19 Total: 34.13 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 7.65 Total: 23.02 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -7.94 Total: -118.05 kcal Atomic # 8 Polarization: -61.39 SS G_CDS: -1.63 Total: -63.03 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -78.41 0.29 -78.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715533195.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.268 kcal (2) G-P(sol) polarization free energy of solvation -78.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds