Wall clock time and date at job start Wed Apr 1 2020 00:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47817 * 2 1 4 4 C 1.53094 * 109.48159 * 119.94438 * 2 1 3 5 5 C 1.53179 * 109.15633 * 177.50146 * 4 2 1 6 6 H 1.08998 * 109.54189 * 63.06770 * 5 4 2 7 7 C 1.50708 * 109.54266 * 183.24186 * 5 4 2 8 8 O 1.21268 * 120.00184 * 359.82481 * 7 5 4 9 9 N 1.34779 * 119.99619 * 179.82556 * 7 5 4 10 10 C 1.46503 * 120.00185 * 359.97438 * 9 7 5 11 11 C 1.46497 * 119.99829 * 180.02562 * 9 7 5 12 12 C 1.53003 * 109.46715 * 269.99620 * 11 9 7 13 13 N 1.46906 * 109.47132 * 180.02562 * 12 11 9 14 14 C 1.46893 * 111.00136 * 66.04414 * 13 12 11 15 15 C 1.46901 * 110.99853 * 190.00109 * 13 12 11 16 16 C 1.50701 * 109.46921 * 169.99766 * 15 13 12 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 13 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 13 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47268 * 89.99721 * 23 21 19 25 25 H 1.48498 * 109.47211 * 209.99980 * 23 21 19 26 26 H 1.48505 * 109.46734 * 329.99774 * 23 21 19 27 27 C 1.53175 * 109.11081 * 303.15125 * 5 4 2 28 28 C 1.53091 * 109.16028 * 56.93596 * 27 5 4 29 29 O 1.42900 * 109.41832 * 302.39154 * 28 27 5 30 30 H 1.08995 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47039 * 300.02166 * 1 2 3 32 32 H 1.08998 * 109.47490 * 60.02158 * 1 2 3 33 33 H 1.09005 * 109.45384 * 57.64443 * 4 2 1 34 34 H 1.09002 * 109.60083 * 297.44922 * 4 2 1 35 35 H 1.08995 * 109.47468 * 270.00345 * 10 9 7 36 36 H 1.09004 * 109.46443 * 30.01007 * 10 9 7 37 37 H 1.09002 * 109.46887 * 149.99893 * 10 9 7 38 38 H 1.09000 * 109.47400 * 149.99689 * 11 9 7 39 39 H 1.08997 * 109.47115 * 29.99189 * 11 9 7 40 40 H 1.09000 * 109.47130 * 59.99904 * 12 11 9 41 41 H 1.09006 * 109.47131 * 299.99785 * 12 11 9 42 42 H 1.08999 * 109.47439 * 183.95618 * 14 13 12 43 43 H 1.08997 * 109.47257 * 303.95746 * 14 13 12 44 44 H 1.09006 * 109.46808 * 63.95302 * 14 13 12 45 45 H 1.09002 * 109.47401 * 49.99794 * 15 13 12 46 46 H 1.09001 * 109.46874 * 289.99807 * 15 13 12 47 47 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 48 48 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.52417 * 176.83719 * 27 5 4 50 50 H 1.08992 * 109.52607 * 297.03336 * 27 5 4 51 51 H 1.09001 * 109.48265 * 62.37470 * 28 27 5 52 52 H 1.09000 * 109.48586 * 182.39552 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7204 1.2506 5 6 3.5711 -0.7710 1.2120 6 1 3.9702 0.2429 1.2415 7 6 4.0799 -1.5479 2.3989 8 8 3.2972 -2.0131 3.1999 9 7 5.4049 -1.7255 2.5702 10 6 6.3505 -1.1639 1.6022 11 6 5.8996 -2.4812 3.7236 12 6 6.1356 -1.5263 4.8956 13 7 6.6322 -2.2839 6.0521 14 6 7.9638 -2.8426 5.7830 15 6 6.6458 -1.4498 7.2613 16 6 6.9218 -2.3141 8.4646 17 8 7.0910 -3.5074 8.3282 18 7 6.9815 -1.7609 9.6922 19 6 7.2332 -2.5472 10.7868 20 1 7.3830 -3.6098 10.6654 21 6 7.2943 -1.9770 12.0524 22 7 7.1114 -0.6841 12.2001 23 14 7.6378 -3.0481 13.5438 24 1 9.1028 -3.1179 13.7762 25 1 6.9747 -2.4630 14.7367 26 1 7.1089 -4.4149 13.3039 27 6 4.0176 -1.4601 -0.0810 28 6 3.4307 -0.7092 -1.2791 29 8 2.0066 -0.6740 -1.1665 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5142 0.8898 32 1 -0.3634 0.5135 -0.8901 33 1 1.6431 -1.7352 1.2728 34 1 1.7163 -0.1817 2.1410 35 1 6.5394 -1.8926 0.8140 36 1 5.9290 -0.2580 1.1664 37 1 7.2864 -0.9230 2.1064 38 1 6.8364 -2.9729 3.4613 39 1 5.1628 -3.2318 4.0093 40 1 5.1988 -1.0346 5.1579 41 1 6.8724 -0.7755 4.6099 42 1 8.2778 -3.4563 6.6273 43 1 7.9254 -3.4557 4.8826 44 1 8.6764 -2.0303 5.6393 45 1 5.6774 -0.9631 7.3780 46 1 7.4246 -0.6925 7.1716 47 1 6.8465 -0.8066 9.8012 48 1 7.1544 -0.2860 13.0837 49 1 5.1058 -1.4498 -0.1423 50 1 3.6613 -2.4901 -0.0867 51 1 3.8192 0.3091 -1.2958 52 1 3.7101 -1.2199 -2.2007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715533196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:06 Heat of formation + Delta-G solvation = -108.339228 kcal Electronic energy + Delta-G solvation = -30220.901023 eV Core-core repulsion = 26027.814912 eV Total energy + Delta-G solvation = -4193.086111 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.88419 -39.18785 -38.53953 -36.79285 -35.57387 -34.13964 -33.78061 -33.14716 -31.22782 -30.00047 -28.40000 -27.77176 -26.94514 -25.90164 -24.84564 -23.71816 -22.89993 -21.34429 -20.68917 -19.39932 -19.08323 -17.82135 -17.38074 -16.78125 -16.62948 -16.35304 -15.96074 -15.67453 -15.21129 -14.98110 -14.78667 -14.52178 -14.45941 -14.16910 -13.94466 -13.60877 -13.40704 -13.32216 -13.08030 -13.00539 -12.86506 -12.73281 -12.56010 -12.15895 -12.06561 -11.95742 -11.72504 -11.53359 -11.49094 -11.28587 -11.26055 -11.14336 -10.91864 -10.84385 -10.77925 -10.37097 -10.19856 -10.18363 -9.68332 -9.45573 -8.97450 -8.40807 -7.95490 -7.83130 -6.39260 -3.79937 2.40168 2.67377 3.19428 3.27926 3.34292 3.35434 3.93236 4.01177 4.10754 4.18186 4.31087 4.32577 4.47464 4.61314 4.71994 4.76948 4.85891 4.92530 4.94974 5.01123 5.06748 5.11571 5.15799 5.19381 5.24139 5.27874 5.29811 5.38393 5.44923 5.50463 5.56926 5.65486 5.68114 5.69873 5.80055 5.83646 5.89533 5.94134 5.98169 6.04321 6.26881 6.32140 6.55151 6.82954 7.10785 7.26312 7.40405 7.57653 7.96784 8.09035 8.64663 9.20707 9.57183 10.09231 10.78575 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022947 B = 0.001793 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.936757 B =15613.108515 C =16354.826992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.058 0.942 4 C -0.130 4.130 5 C -0.108 4.108 6 H 0.096 0.904 7 C 0.516 3.484 8 O -0.526 6.526 9 N -0.616 5.616 10 C 0.075 3.925 11 C 0.118 3.882 12 C 0.044 3.956 13 N -0.516 5.516 14 C 0.019 3.981 15 C 0.048 3.952 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.159 4.159 28 C 0.065 3.935 29 O -0.380 6.380 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.028 0.972 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.014 0.986 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.088 0.912 50 H 0.078 0.922 51 H 0.051 0.949 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 6.327 -28.824 29.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.076 0.924 4 C -0.168 4.168 5 C -0.129 4.129 6 H 0.114 0.886 7 C 0.304 3.696 8 O -0.401 6.401 9 N -0.350 5.350 10 C -0.068 4.068 11 C -0.004 4.004 12 C -0.085 4.085 13 N -0.240 5.240 14 C -0.128 4.128 15 C -0.083 4.083 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.196 4.196 28 C -0.012 4.012 29 O -0.299 6.299 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.032 0.968 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.107 0.893 50 H 0.096 0.904 51 H 0.070 0.930 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.486 4.900 -28.346 29.285 hybrid contribution 1.069 1.101 0.975 1.818 sum -4.417 6.001 -27.372 28.368 Atomic orbital electron populations 1.21759 0.92731 1.03231 1.02512 1.22135 0.95420 0.94797 0.84746 0.92413 1.22077 0.92825 1.03342 0.98573 1.21368 0.97832 1.00107 0.93603 0.88557 1.20578 0.81871 0.80455 0.86704 1.90749 1.55064 1.48967 1.45303 1.47845 1.05948 1.55280 1.25943 1.21976 0.93686 0.98563 0.92604 1.21492 1.00631 0.94218 0.84100 1.22421 1.00063 0.94972 0.91092 1.61456 1.26226 1.34822 1.01483 1.22610 0.87868 0.99029 1.03329 1.21861 1.01707 0.94384 0.90384 1.19717 0.84452 0.88810 0.83960 1.90478 1.54849 1.15454 1.85306 1.41864 1.62497 1.10717 1.05098 1.19700 1.45080 0.93703 0.84222 0.87901 1.25262 0.97508 0.96151 0.99119 1.69617 1.50077 1.10159 1.24562 0.85852 0.78390 0.79818 0.80196 1.20471 1.20947 1.19401 1.22469 1.02364 1.01137 0.93676 1.22539 0.81255 0.99440 0.97965 1.87950 1.20776 1.78068 1.43125 0.91614 0.90846 0.91814 0.90001 0.90005 0.92108 0.90908 0.90880 0.90329 0.88655 0.90663 0.95343 0.88383 0.92224 0.96777 0.89428 0.93535 0.77515 0.91919 0.89345 0.90352 0.93042 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.56 37.16 0.36 -0.61 16 2 C 0.09 0.64 3.26 -26.68 -0.09 0.56 16 3 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 4 C -0.13 -1.14 4.02 -26.59 -0.11 -1.25 16 5 C -0.11 -0.85 1.80 -91.58 -0.16 -1.02 16 6 H 0.10 0.60 7.40 -51.93 -0.38 0.21 16 7 C 0.52 5.91 7.08 -10.98 -0.08 5.84 16 8 O -0.53 -8.41 15.55 5.57 0.09 -8.32 16 9 N -0.62 -6.05 2.87 -181.57 -0.52 -6.58 16 10 C 0.07 0.42 8.80 59.85 0.53 0.95 16 11 C 0.12 1.43 5.34 -4.04 -0.02 1.41 16 12 C 0.04 0.60 5.28 -3.82 -0.02 0.58 16 13 N -0.52 -8.93 4.50 -244.36 -1.10 -10.03 16 14 C 0.02 0.31 9.01 60.06 0.54 0.85 16 15 C 0.05 0.90 5.45 -4.97 -0.03 0.87 16 16 C 0.45 10.77 7.51 -10.98 -0.08 10.69 16 17 O -0.58 -15.78 13.88 5.55 0.08 -15.70 16 18 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 19 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 23 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C -0.16 -0.98 5.03 -26.59 -0.13 -1.11 16 28 C 0.06 0.37 6.84 37.20 0.25 0.63 16 29 O -0.38 -3.22 10.41 -35.23 -0.37 -3.59 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.26 7.02 -51.93 -0.36 -0.11 16 36 H 0.07 0.29 5.98 -51.93 -0.31 -0.02 16 37 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 38 H 0.08 0.83 6.40 -51.93 -0.33 0.49 16 39 H 0.10 1.43 7.42 -51.93 -0.39 1.04 16 40 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 41 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 42 H 0.10 1.93 5.88 -51.93 -0.31 1.63 16 43 H 0.06 0.80 6.30 -51.93 -0.33 0.47 16 44 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.09 1.54 7.93 -51.93 -0.41 1.13 16 46 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 47 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.09 0.37 4.65 -51.93 -0.24 0.13 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 52 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 406.50 15.07 6.13 6.13 Total: -1.00 -34.58 406.50 -8.13 -42.71 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -8.79 Total: 7.58 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 0.72 Total: 10.31 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.95 Total: -55.42 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.20 Total: -27.61 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.58 -8.13 -42.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715533196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.630 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds