Wall clock time and date at job start Wed Apr 1 2020 00:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47817 * 2 1 4 4 C 1.53094 * 109.48159 * 119.94438 * 2 1 3 5 5 C 1.53179 * 109.15633 * 177.50146 * 4 2 1 6 6 H 1.08998 * 109.54189 * 63.06770 * 5 4 2 7 7 C 1.50708 * 109.54266 * 183.24186 * 5 4 2 8 8 O 1.21268 * 120.00184 * 359.82481 * 7 5 4 9 9 N 1.34779 * 119.99619 * 179.82556 * 7 5 4 10 10 C 1.46503 * 120.00185 * 359.97438 * 9 7 5 11 11 C 1.46497 * 119.99829 * 180.02562 * 9 7 5 12 12 C 1.53003 * 109.46715 * 269.99620 * 11 9 7 13 13 N 1.46906 * 109.47132 * 180.02562 * 12 11 9 14 14 C 1.46893 * 111.00136 * 66.04414 * 13 12 11 15 15 C 1.46901 * 110.99853 * 190.00109 * 13 12 11 16 16 C 1.50701 * 109.46921 * 169.99766 * 15 13 12 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 13 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 13 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47268 * 89.99721 * 23 21 19 25 25 H 1.48498 * 109.47211 * 209.99980 * 23 21 19 26 26 H 1.48505 * 109.46734 * 329.99774 * 23 21 19 27 27 C 1.53175 * 109.11081 * 303.15125 * 5 4 2 28 28 C 1.53091 * 109.16028 * 56.93596 * 27 5 4 29 29 O 1.42900 * 109.41832 * 302.39154 * 28 27 5 30 30 H 1.08995 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47039 * 300.02166 * 1 2 3 32 32 H 1.08998 * 109.47490 * 60.02158 * 1 2 3 33 33 H 1.09005 * 109.45384 * 57.64443 * 4 2 1 34 34 H 1.09002 * 109.60083 * 297.44922 * 4 2 1 35 35 H 1.08995 * 109.47468 * 270.00345 * 10 9 7 36 36 H 1.09004 * 109.46443 * 30.01007 * 10 9 7 37 37 H 1.09002 * 109.46887 * 149.99893 * 10 9 7 38 38 H 1.09000 * 109.47400 * 149.99689 * 11 9 7 39 39 H 1.08997 * 109.47115 * 29.99189 * 11 9 7 40 40 H 1.09000 * 109.47130 * 59.99904 * 12 11 9 41 41 H 1.09006 * 109.47131 * 299.99785 * 12 11 9 42 42 H 1.08999 * 109.47439 * 183.95618 * 14 13 12 43 43 H 1.08997 * 109.47257 * 303.95746 * 14 13 12 44 44 H 1.09006 * 109.46808 * 63.95302 * 14 13 12 45 45 H 1.09002 * 109.47401 * 49.99794 * 15 13 12 46 46 H 1.09001 * 109.46874 * 289.99807 * 15 13 12 47 47 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 48 48 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.52417 * 176.83719 * 27 5 4 50 50 H 1.08992 * 109.52607 * 297.03336 * 27 5 4 51 51 H 1.09001 * 109.48265 * 62.37470 * 28 27 5 52 52 H 1.09000 * 109.48586 * 182.39552 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7204 1.2506 5 6 3.5711 -0.7710 1.2120 6 1 3.9702 0.2429 1.2415 7 6 4.0799 -1.5479 2.3989 8 8 3.2972 -2.0131 3.1999 9 7 5.4049 -1.7255 2.5702 10 6 6.3505 -1.1639 1.6022 11 6 5.8996 -2.4812 3.7236 12 6 6.1356 -1.5263 4.8956 13 7 6.6322 -2.2839 6.0521 14 6 7.9638 -2.8426 5.7830 15 6 6.6458 -1.4498 7.2613 16 6 6.9218 -2.3141 8.4646 17 8 7.0910 -3.5074 8.3282 18 7 6.9815 -1.7609 9.6922 19 6 7.2332 -2.5472 10.7868 20 1 7.3830 -3.6098 10.6654 21 6 7.2943 -1.9770 12.0524 22 7 7.1114 -0.6841 12.2001 23 14 7.6378 -3.0481 13.5438 24 1 9.1028 -3.1179 13.7762 25 1 6.9747 -2.4630 14.7367 26 1 7.1089 -4.4149 13.3039 27 6 4.0176 -1.4601 -0.0810 28 6 3.4307 -0.7092 -1.2791 29 8 2.0066 -0.6740 -1.1665 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5142 0.8898 32 1 -0.3634 0.5135 -0.8901 33 1 1.6431 -1.7352 1.2728 34 1 1.7163 -0.1817 2.1410 35 1 6.5394 -1.8926 0.8140 36 1 5.9290 -0.2580 1.1664 37 1 7.2864 -0.9230 2.1064 38 1 6.8364 -2.9729 3.4613 39 1 5.1628 -3.2318 4.0093 40 1 5.1988 -1.0346 5.1579 41 1 6.8724 -0.7755 4.6099 42 1 8.2778 -3.4563 6.6273 43 1 7.9254 -3.4557 4.8826 44 1 8.6764 -2.0303 5.6393 45 1 5.6774 -0.9631 7.3780 46 1 7.4246 -0.6925 7.1716 47 1 6.8465 -0.8066 9.8012 48 1 7.1544 -0.2860 13.0837 49 1 5.1058 -1.4498 -0.1423 50 1 3.6613 -2.4901 -0.0867 51 1 3.8192 0.3091 -1.2958 52 1 3.7101 -1.2199 -2.2007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715533196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:00 Heat of formation + Delta-G solvation = -134.331843 kcal Electronic energy + Delta-G solvation = -30222.028147 eV Core-core repulsion = 26027.814912 eV Total energy + Delta-G solvation = -4194.213235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.63725 -40.42145 -39.77342 -38.16096 -36.59272 -35.86051 -34.76794 -33.69226 -33.29660 -31.08868 -29.20821 -28.95381 -27.61771 -27.15722 -26.27031 -24.81303 -23.52607 -22.41308 -21.39896 -21.03119 -20.13376 -19.85639 -18.15645 -17.91404 -17.49346 -17.24263 -16.91026 -16.68228 -16.55195 -16.35780 -16.03297 -15.70646 -15.51602 -15.27697 -15.04068 -14.95763 -14.59704 -14.26786 -14.07038 -13.80242 -13.77300 -13.47861 -13.46012 -13.34013 -13.18627 -13.05858 -13.00902 -12.63648 -12.55884 -12.50768 -12.41874 -12.37372 -12.13261 -12.07491 -11.89282 -11.67945 -11.47343 -11.40327 -10.91320 -10.37245 -10.33967 -10.01650 -9.73555 -9.22613 -8.47411 -5.96234 1.36964 1.40533 1.53512 1.55450 1.86925 2.03286 2.28507 2.82529 2.87828 3.18930 3.38549 3.42157 3.60005 3.75744 3.88576 3.93976 4.02831 4.13662 4.19283 4.21188 4.30222 4.34540 4.40217 4.44124 4.47352 4.47937 4.54243 4.59683 4.62391 4.67002 4.69307 4.75719 4.81521 4.83172 4.89410 4.94863 4.99731 5.07231 5.13351 5.21137 5.25424 5.31931 5.40026 5.45922 5.83677 6.04415 6.17063 6.33404 6.35880 6.59494 7.11807 7.13210 7.54696 8.10673 8.70076 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022947 B = 0.001793 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.936757 B =15613.108515 C =16354.826992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.090 3.910 3 H 0.078 0.922 4 C -0.129 4.129 5 C -0.101 4.101 6 H 0.125 0.875 7 C 0.509 3.491 8 O -0.584 6.584 9 N -0.611 5.611 10 C 0.064 3.936 11 C 0.124 3.876 12 C 0.054 3.946 13 N -0.541 5.541 14 C 0.025 3.975 15 C 0.060 3.940 16 C 0.441 3.559 17 O -0.613 6.613 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.152 4.152 28 C 0.060 3.940 29 O -0.402 6.402 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.035 0.965 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.115 0.885 50 H 0.055 0.945 51 H 0.075 0.925 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.255 8.220 -30.825 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.095 0.905 4 C -0.167 4.167 5 C -0.122 4.122 6 H 0.143 0.857 7 C 0.298 3.702 8 O -0.464 6.464 9 N -0.343 5.343 10 C -0.077 4.077 11 C 0.001 3.999 12 C -0.075 4.075 13 N -0.266 5.266 14 C -0.122 4.122 15 C -0.071 4.071 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.194 1.194 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.189 4.189 28 C -0.016 4.016 29 O -0.322 6.322 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.117 0.883 46 H 0.090 0.910 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.133 0.867 50 H 0.074 0.926 51 H 0.093 0.907 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.977 6.831 -30.396 31.407 hybrid contribution 0.618 0.491 1.530 1.722 sum -3.358 7.322 -28.866 29.969 Atomic orbital electron populations 1.21790 0.92684 1.02624 1.03296 1.22151 0.95630 0.95286 0.83684 0.90458 1.22029 0.93863 1.01671 0.99148 1.21399 0.96939 1.01067 0.92776 0.85692 1.21287 0.82008 0.79937 0.86978 1.90725 1.56668 1.51466 1.47543 1.47928 1.06209 1.54477 1.25726 1.22346 0.93237 0.99916 0.92228 1.21283 1.00429 0.93517 0.84703 1.22354 0.99662 0.95369 0.90075 1.61372 1.27278 1.35785 1.02208 1.22497 0.87676 0.99442 1.02611 1.21703 1.02995 0.93720 0.88657 1.20718 0.82515 0.89000 0.84895 1.90457 1.55921 1.17460 1.86056 1.41933 1.63169 1.10708 1.05385 1.19662 1.47442 0.93176 0.85893 0.90294 1.26061 0.96608 0.97510 1.01244 1.69678 1.49789 1.11151 1.25584 0.84909 0.78662 0.77794 0.76849 1.19419 1.19553 1.19919 1.22463 1.03930 0.99693 0.92825 1.22765 0.79861 1.00860 0.98101 1.87931 1.22616 1.78407 1.43218 0.92958 0.90053 0.91012 0.93000 0.91019 0.90165 0.88557 0.89685 0.88163 0.92371 0.92371 0.92618 0.92575 0.89637 0.94673 0.88349 0.91019 0.77079 0.91304 0.86675 0.92627 0.90718 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.56 71.98 0.69 -1.21 16 2 C 0.09 1.23 3.26 30.63 0.10 1.33 16 3 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.13 -2.28 4.02 30.69 0.12 -2.15 16 5 C -0.10 -1.43 1.80 -11.42 -0.02 -1.45 16 6 H 0.13 1.08 7.40 -2.39 -0.02 1.06 16 7 C 0.51 11.42 7.08 87.66 0.62 12.04 16 8 O -0.58 -19.71 15.55 -2.99 -0.05 -19.75 16 9 N -0.61 -10.81 2.87 -846.75 -2.43 -13.24 16 10 C 0.06 0.44 8.80 127.77 1.12 1.57 16 11 C 0.12 2.87 5.34 86.38 0.46 3.33 16 12 C 0.05 1.40 5.28 86.30 0.46 1.86 16 13 N -0.54 -18.39 4.50 -927.03 -4.17 -22.56 16 14 C 0.03 0.78 9.01 127.69 1.15 1.93 16 15 C 0.06 2.23 5.45 85.56 0.47 2.70 16 16 C 0.44 21.84 7.51 87.66 0.66 22.50 16 17 O -0.61 -34.78 13.88 -3.07 -0.04 -34.83 16 18 N -0.57 -30.41 5.29 -306.98 -1.62 -32.04 16 19 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 20 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 21 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 22 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 23 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 27 C -0.15 -1.50 5.03 30.68 0.15 -1.34 16 28 C 0.06 0.51 6.84 72.01 0.49 1.00 16 29 O -0.40 -6.18 10.41 -148.98 -1.55 -7.73 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 1.21 8.03 -2.38 -0.02 1.19 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 0.31 7.02 -2.39 -0.02 0.29 16 36 H 0.10 0.26 5.98 -2.39 -0.01 0.25 16 37 H 0.08 0.47 8.07 -2.39 -0.02 0.45 16 38 H 0.10 1.85 6.40 -2.39 -0.02 1.84 16 39 H 0.06 1.80 7.42 -2.39 -0.02 1.78 16 40 H 0.06 1.72 7.93 -2.39 -0.02 1.70 16 41 H 0.06 1.16 8.12 -2.38 -0.02 1.15 16 42 H 0.06 2.24 5.88 -2.39 -0.01 2.23 16 43 H 0.09 2.14 6.30 -2.39 -0.02 2.12 16 44 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.10 3.41 7.93 -2.39 -0.02 3.39 16 46 H 0.07 2.29 8.12 -2.39 -0.02 2.27 16 47 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 48 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 49 H 0.12 0.49 4.65 -2.39 -0.01 0.48 16 50 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 52 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -79.66 406.50 0.38 -79.27 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.19 Total: 32.09 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 7.76 Total: 23.29 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -7.94 Total: -118.12 kcal Atomic # 8 Polarization: -60.67 SS G_CDS: -1.64 Total: -62.31 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -79.66 0.38 -79.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715533196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.061 kcal (2) G-P(sol) polarization free energy of solvation -79.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds