Wall clock time and date at job start Wed Apr 1 2020 00:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47127 * 2 1 4 4 O 1.42905 * 109.47079 * 120.00429 * 2 1 3 5 5 C 1.42894 * 113.99732 * 150.00014 * 4 2 1 6 6 C 1.50701 * 109.47002 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99815 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99980 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99550 * 179.97438 * 8 6 5 10 10 H 1.09009 * 110.01770 * 34.93997 * 9 8 6 11 11 C 1.54264 * 110.03789 * 273.54789 * 9 8 6 12 12 C 1.54892 * 104.19651 * 217.06063 * 11 9 8 13 13 C 1.54891 * 102.74959 * 37.93955 * 12 11 9 14 14 C 1.54224 * 110.06132 * 156.31319 * 9 8 6 15 15 H 1.09004 * 110.08793 * 238.52306 * 14 9 8 16 16 C 1.52992 * 110.14449 * 0.06021 * 14 9 8 17 17 N 1.46897 * 109.47414 * 183.47747 * 16 14 9 18 18 C 1.46899 * 111.00385 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47248 * 180.02562 * 18 17 16 20 20 O 1.21297 * 120.00107 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00152 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00291 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99950 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00362 * 179.97438 * 22 21 19 25 25 N 1.31405 * 120.00368 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99684 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47246 * 90.00022 * 26 24 22 28 28 H 1.48498 * 109.46999 * 210.00022 * 26 24 22 29 29 H 1.48494 * 109.47255 * 329.99598 * 26 24 22 30 30 H 1.08995 * 109.47117 * 299.99808 * 1 2 3 31 31 H 1.09007 * 109.47374 * 59.99663 * 1 2 3 32 32 H 1.09003 * 109.47606 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47032 * 240.00551 * 2 1 3 34 34 H 1.09008 * 109.46715 * 60.00357 * 3 2 1 35 35 H 1.09004 * 109.47055 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47590 * 300.00152 * 3 2 1 37 37 H 1.08994 * 109.47720 * 59.99973 * 5 4 2 38 38 H 1.09005 * 109.47119 * 299.99607 * 5 4 2 39 39 H 0.96996 * 119.99889 * 359.97438 * 8 6 5 40 40 H 1.08993 * 110.49070 * 98.37886 * 11 9 8 41 41 H 1.09001 * 110.59511 * 335.79254 * 11 9 8 42 42 H 1.09000 * 110.75513 * 279.62815 * 12 11 9 43 43 H 1.09002 * 110.75596 * 156.25525 * 12 11 9 44 44 H 1.09002 * 110.48740 * 80.73781 * 13 12 11 45 45 H 1.08998 * 110.48604 * 203.24665 * 13 12 11 46 46 H 1.08999 * 109.47532 * 303.48380 * 16 14 9 47 47 H 1.09002 * 109.47053 * 63.47904 * 16 14 9 48 48 H 1.00901 * 110.99905 * 56.04541 * 17 16 14 49 49 H 1.08994 * 109.47154 * 300.00506 * 18 17 16 50 50 H 1.09005 * 109.46698 * 60.00562 * 18 17 16 51 51 H 0.97005 * 119.99507 * 359.97438 * 21 19 18 52 52 H 0.97003 * 120.00062 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6738 1.1668 5 6 3.2659 -1.3245 0.9885 6 6 3.6692 -1.9990 2.2744 7 8 2.9491 -1.9288 3.2477 8 7 4.8307 -2.6793 2.3430 9 6 5.2230 -3.3345 3.5932 10 1 4.3409 -3.7177 4.1065 11 6 5.9706 -2.3363 4.5012 12 6 7.0699 -3.1903 5.1804 13 6 7.5136 -4.1436 4.0431 14 6 6.2054 -4.4869 3.3010 15 1 5.8005 -5.4277 3.6739 16 6 6.4669 -4.5877 1.7970 17 7 7.3374 -5.7399 1.5274 18 6 7.6101 -5.8687 0.0897 19 6 8.5034 -7.0590 -0.1474 20 8 8.8758 -7.7340 0.7891 21 7 8.8886 -7.3736 -1.4001 22 6 9.7008 -8.4568 -1.6159 23 1 10.0323 -9.0578 -0.7821 24 6 10.0974 -8.7814 -2.9074 25 7 10.8763 -9.8194 -3.1142 26 14 9.5234 -7.7424 -4.3497 27 1 10.4987 -6.6489 -4.5913 28 1 9.4223 -8.5925 -5.5630 29 1 8.1927 -7.1597 -4.0414 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6766 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 4.0199 -0.5875 0.7124 38 1 3.1808 -2.0707 0.1985 39 1 5.4068 -2.7351 1.5647 40 1 5.2948 -1.9201 5.2482 41 1 6.4188 -1.5395 3.9075 42 1 6.6589 -3.7535 6.0182 43 1 7.9004 -2.5635 5.5051 44 1 8.2111 -3.6401 3.3736 45 1 7.9660 -5.0453 4.4559 46 1 5.5207 -4.7163 1.2714 47 1 6.9537 -3.6758 1.4509 48 1 6.9374 -6.5894 1.8968 49 1 6.6717 -6.0064 -0.4472 50 1 8.1047 -4.9658 -0.2685 51 1 8.5904 -6.8340 -2.1490 52 1 11.1529 -10.0462 -4.0159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715546637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:20 Heat of formation + Delta-G solvation = -121.117648 kcal Electronic energy + Delta-G solvation = -29784.144579 eV Core-core repulsion = 25590.504354 eV Total energy + Delta-G solvation = -4193.640225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.53719 -39.05743 -38.45728 -37.85344 -35.23995 -33.97181 -33.91002 -33.17933 -31.71019 -30.26572 -29.14010 -27.68783 -26.94744 -26.59067 -24.42446 -23.09571 -21.77938 -21.33738 -20.79969 -19.72800 -19.33795 -18.38500 -17.66776 -17.40319 -16.52634 -16.30534 -15.90585 -15.79417 -15.31509 -15.14121 -14.94357 -14.78941 -14.44383 -14.17154 -13.84490 -13.82233 -13.51810 -13.29926 -13.18063 -13.06589 -12.66524 -12.62689 -12.41143 -12.32738 -12.10317 -11.94561 -11.88769 -11.82322 -11.44975 -11.21797 -11.17693 -11.12118 -10.94026 -10.80328 -10.70578 -10.63611 -10.11380 -10.02290 -10.00962 -9.61112 -9.32387 -8.63863 -8.23951 -8.19127 -6.34424 -3.86050 2.32852 2.46425 2.98075 3.02931 3.11502 3.54933 3.69523 3.92032 4.06535 4.31565 4.39822 4.41722 4.50945 4.57139 4.66247 4.68886 4.72674 4.79237 4.83029 5.01658 5.14135 5.15553 5.19894 5.23632 5.26714 5.30942 5.32721 5.34392 5.39934 5.47398 5.54720 5.57351 5.63003 5.73047 5.73486 5.77420 5.80305 5.86850 5.92048 5.96694 6.17092 6.26035 6.30576 6.67811 7.00810 7.18019 7.48679 7.54549 7.93974 8.10929 8.55974 8.91521 9.38671 9.78666 10.78671 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.002279 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.717337 B =12282.326366 C =14823.774065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.176 4.176 4 O -0.357 6.357 5 C 0.042 3.958 6 C 0.513 3.487 7 O -0.519 6.519 8 N -0.726 5.726 9 C 0.149 3.851 10 H 0.092 0.908 11 C -0.132 4.132 12 C -0.127 4.127 13 C -0.105 4.105 14 C -0.096 4.096 15 H 0.084 0.916 16 C 0.061 3.939 17 N -0.664 5.664 18 C 0.047 3.953 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.402 0.598 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.030 0.970 47 H 0.071 0.929 48 H 0.352 0.648 49 H 0.043 0.957 50 H 0.086 0.914 51 H 0.370 0.630 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.561 22.336 6.079 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.038 4.038 6 C 0.298 3.702 7 O -0.394 6.394 8 N -0.382 5.382 9 C 0.044 3.956 10 H 0.110 0.890 11 C -0.171 4.171 12 C -0.165 4.165 13 C -0.143 4.143 14 C -0.115 4.115 15 H 0.102 0.898 16 C -0.069 4.069 17 N -0.296 5.296 18 C -0.085 4.085 19 C 0.235 3.765 20 O -0.445 6.445 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.520 5.520 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.240 0.760 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.048 0.952 47 H 0.089 0.911 48 H 0.172 0.828 49 H 0.061 0.939 50 H 0.105 0.895 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.253 22.120 7.562 28.472 hybrid contribution -0.720 0.388 -2.426 2.560 sum -16.973 22.508 5.136 28.655 Atomic orbital electron populations 1.21854 0.93195 1.02977 1.02666 1.22193 0.95426 0.92506 0.87823 1.22317 1.01519 0.96693 1.02855 1.88066 1.34502 1.69694 1.35314 1.22247 0.88392 0.97212 0.95946 1.20275 0.81267 0.78980 0.89694 1.90729 1.51905 1.59146 1.37573 1.46273 1.22024 1.54339 1.15527 1.21759 0.97664 0.92051 0.84145 0.89026 1.22763 0.97668 0.97929 0.98747 1.22524 0.97971 0.97915 0.98116 1.22284 0.95943 0.99656 0.96393 1.22086 0.95943 0.97976 0.95539 0.89773 1.22033 0.94553 0.95208 0.95115 1.60041 1.49118 1.07012 1.13473 1.21714 0.98425 0.99042 0.89357 1.19694 0.85743 0.87520 0.83568 1.90573 1.58735 1.53520 1.41700 1.42206 1.46177 1.28219 1.06391 1.19429 1.23857 1.04367 0.95751 0.86276 1.25047 0.96932 0.96703 0.97534 1.69618 1.34189 1.25958 1.22283 0.86663 0.78962 0.80682 0.82994 1.19597 1.20190 1.19586 0.91585 0.91076 0.91833 0.91953 0.91563 0.92480 0.91431 0.90346 0.90250 0.76044 0.91256 0.91255 0.91386 0.91338 0.90921 0.90738 0.95180 0.91061 0.82834 0.93861 0.89534 0.79734 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.56 37.16 0.36 -0.58 16 2 C 0.08 0.54 3.34 -26.73 -0.09 0.45 16 3 C -0.18 -1.03 9.53 37.16 0.35 -0.68 16 4 O -0.36 -3.64 9.52 -55.14 -0.52 -4.16 16 5 C 0.04 0.33 6.23 36.01 0.22 0.55 16 6 C 0.51 5.39 7.90 -10.98 -0.09 5.30 16 7 O -0.52 -7.77 16.18 -14.35 -0.23 -8.00 16 8 N -0.73 -6.05 4.46 -52.54 -0.23 -6.29 16 9 C 0.15 1.37 3.21 -66.63 -0.21 1.15 16 10 H 0.09 0.98 7.61 -51.92 -0.39 0.59 16 11 C -0.13 -1.16 6.52 -25.07 -0.16 -1.33 16 12 C -0.13 -1.06 6.91 -24.74 -0.17 -1.23 16 13 C -0.11 -1.01 6.15 -25.07 -0.15 -1.16 16 14 C -0.10 -0.89 3.11 -89.32 -0.28 -1.17 16 15 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.06 0.59 3.61 -3.83 -0.01 0.58 16 17 N -0.66 -9.17 5.91 -115.06 -0.68 -9.85 16 18 C 0.05 0.72 6.17 -4.98 -0.03 0.69 16 19 C 0.45 9.81 7.82 -10.99 -0.09 9.72 16 20 O -0.56 -14.73 15.78 5.54 0.09 -14.65 16 21 N -0.59 -13.66 5.09 -10.96 -0.06 -13.71 16 22 C -0.31 -8.50 10.16 -14.94 -0.15 -8.65 16 23 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.43 13.96 55.50 0.77 -24.66 16 26 Si 0.88 18.92 27.74 -169.99 -4.71 14.21 16 27 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 28 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 29 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.34 7.79 -51.92 -0.40 -0.06 16 34 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.44 7.87 -51.93 -0.41 0.03 16 38 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 39 H 0.40 2.54 5.85 -40.82 -0.24 2.30 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.03 0.27 7.51 -51.93 -0.39 -0.12 16 47 H 0.07 0.61 7.08 -51.93 -0.37 0.25 16 48 H 0.35 5.21 8.43 -39.29 -0.33 4.88 16 49 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 51 H 0.37 7.44 5.76 -40.82 -0.24 7.21 16 52 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 418.16 15.07 6.30 6.30 Total: -1.00 -35.16 418.16 -8.93 -44.09 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -9.05 Total: 12.08 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.60 Total: 4.65 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.20 Total: -54.51 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.67 Total: -26.81 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.16 -8.93 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715546637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.031 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds