Wall clock time and date at job start Wed Apr 1 2020 00:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47127 * 2 1 4 4 O 1.42905 * 109.47079 * 120.00429 * 2 1 3 5 5 C 1.42894 * 113.99732 * 150.00014 * 4 2 1 6 6 C 1.50701 * 109.47002 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99815 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99980 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99550 * 179.97438 * 8 6 5 10 10 H 1.09009 * 110.01770 * 34.93997 * 9 8 6 11 11 C 1.54264 * 110.03789 * 273.54789 * 9 8 6 12 12 C 1.54892 * 104.19651 * 217.06063 * 11 9 8 13 13 C 1.54891 * 102.74959 * 37.93955 * 12 11 9 14 14 C 1.54224 * 110.06132 * 156.31319 * 9 8 6 15 15 H 1.09004 * 110.08793 * 238.52306 * 14 9 8 16 16 C 1.52992 * 110.14449 * 0.06021 * 14 9 8 17 17 N 1.46897 * 109.47414 * 183.47747 * 16 14 9 18 18 C 1.46899 * 111.00385 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47248 * 180.02562 * 18 17 16 20 20 O 1.21297 * 120.00107 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00152 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00291 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99950 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00362 * 179.97438 * 22 21 19 25 25 N 1.31405 * 120.00368 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99684 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47246 * 90.00022 * 26 24 22 28 28 H 1.48498 * 109.46999 * 210.00022 * 26 24 22 29 29 H 1.48494 * 109.47255 * 329.99598 * 26 24 22 30 30 H 1.08995 * 109.47117 * 299.99808 * 1 2 3 31 31 H 1.09007 * 109.47374 * 59.99663 * 1 2 3 32 32 H 1.09003 * 109.47606 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47032 * 240.00551 * 2 1 3 34 34 H 1.09008 * 109.46715 * 60.00357 * 3 2 1 35 35 H 1.09004 * 109.47055 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47590 * 300.00152 * 3 2 1 37 37 H 1.08994 * 109.47720 * 59.99973 * 5 4 2 38 38 H 1.09005 * 109.47119 * 299.99607 * 5 4 2 39 39 H 0.96996 * 119.99889 * 359.97438 * 8 6 5 40 40 H 1.08993 * 110.49070 * 98.37886 * 11 9 8 41 41 H 1.09001 * 110.59511 * 335.79254 * 11 9 8 42 42 H 1.09000 * 110.75513 * 279.62815 * 12 11 9 43 43 H 1.09002 * 110.75596 * 156.25525 * 12 11 9 44 44 H 1.09002 * 110.48740 * 80.73781 * 13 12 11 45 45 H 1.08998 * 110.48604 * 203.24665 * 13 12 11 46 46 H 1.08999 * 109.47532 * 303.48380 * 16 14 9 47 47 H 1.09002 * 109.47053 * 63.47904 * 16 14 9 48 48 H 1.00901 * 110.99905 * 56.04541 * 17 16 14 49 49 H 1.08994 * 109.47154 * 300.00506 * 18 17 16 50 50 H 1.09005 * 109.46698 * 60.00562 * 18 17 16 51 51 H 0.97005 * 119.99507 * 359.97438 * 21 19 18 52 52 H 0.97003 * 120.00062 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6738 1.1668 5 6 3.2659 -1.3245 0.9885 6 6 3.6692 -1.9990 2.2744 7 8 2.9491 -1.9288 3.2477 8 7 4.8307 -2.6793 2.3430 9 6 5.2230 -3.3345 3.5932 10 1 4.3409 -3.7177 4.1065 11 6 5.9706 -2.3363 4.5012 12 6 7.0699 -3.1903 5.1804 13 6 7.5136 -4.1436 4.0431 14 6 6.2054 -4.4869 3.3010 15 1 5.8005 -5.4277 3.6739 16 6 6.4669 -4.5877 1.7970 17 7 7.3374 -5.7399 1.5274 18 6 7.6101 -5.8687 0.0897 19 6 8.5034 -7.0590 -0.1474 20 8 8.8758 -7.7340 0.7891 21 7 8.8886 -7.3736 -1.4001 22 6 9.7008 -8.4568 -1.6159 23 1 10.0323 -9.0578 -0.7821 24 6 10.0974 -8.7814 -2.9074 25 7 10.8763 -9.8194 -3.1142 26 14 9.5234 -7.7424 -4.3497 27 1 10.4987 -6.6489 -4.5913 28 1 9.4223 -8.5925 -5.5630 29 1 8.1927 -7.1597 -4.0414 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6766 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 4.0199 -0.5875 0.7124 38 1 3.1808 -2.0707 0.1985 39 1 5.4068 -2.7351 1.5647 40 1 5.2948 -1.9201 5.2482 41 1 6.4188 -1.5395 3.9075 42 1 6.6589 -3.7535 6.0182 43 1 7.9004 -2.5635 5.5051 44 1 8.2111 -3.6401 3.3736 45 1 7.9660 -5.0453 4.4559 46 1 5.5207 -4.7163 1.2714 47 1 6.9537 -3.6758 1.4509 48 1 6.9374 -6.5894 1.8968 49 1 6.6717 -6.0064 -0.4472 50 1 8.1047 -4.9658 -0.2685 51 1 8.5904 -6.8340 -2.1490 52 1 11.1529 -10.0462 -4.0159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715546637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:19 Heat of formation + Delta-G solvation = -148.080820 kcal Electronic energy + Delta-G solvation = -29785.313790 eV Core-core repulsion = 25590.504354 eV Total energy + Delta-G solvation = -4194.809436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31421 -40.28159 -39.61331 -38.63748 -36.45296 -35.74095 -34.76384 -33.73040 -33.68120 -31.23550 -29.83060 -28.24849 -28.13356 -27.36862 -25.91786 -24.18205 -22.26085 -22.09131 -21.54949 -21.27238 -20.53460 -20.10529 -18.40635 -18.06401 -17.69920 -17.17136 -17.01891 -16.72442 -16.62748 -16.23047 -15.83862 -15.60072 -15.44494 -15.25936 -14.95283 -14.83999 -14.80585 -14.35109 -14.22365 -13.94996 -13.83636 -13.55517 -13.24759 -13.12608 -13.05808 -12.88769 -12.83570 -12.71147 -12.39541 -12.35001 -12.26944 -11.96826 -11.88861 -11.73779 -11.64092 -11.57328 -11.48903 -11.46776 -10.85507 -10.63700 -10.40996 -10.23030 -10.08997 -9.26603 -8.39653 -6.00736 1.31154 1.37715 1.46424 1.57026 1.82675 1.98956 2.24878 2.71904 3.01215 3.16850 3.32810 3.67695 3.69505 3.75320 3.88394 4.02400 4.10537 4.17789 4.21557 4.28815 4.29418 4.32973 4.38803 4.46696 4.52361 4.54619 4.59793 4.62897 4.74686 4.75609 4.81312 4.82816 4.88648 4.91714 4.94606 5.08240 5.18696 5.23617 5.29330 5.33356 5.38907 5.51519 5.53871 5.55454 5.92487 6.07721 6.16438 6.38406 6.53862 6.61683 6.90429 7.22471 7.42235 7.99657 8.78077 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.002279 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.717337 B =12282.326366 C =14823.774065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.393 6.393 5 C 0.042 3.958 6 C 0.509 3.491 7 O -0.573 6.573 8 N -0.711 5.711 9 C 0.153 3.847 10 H 0.073 0.927 11 C -0.127 4.127 12 C -0.121 4.121 13 C -0.103 4.103 14 C -0.089 4.089 15 H 0.077 0.923 16 C 0.064 3.936 17 N -0.681 5.681 18 C 0.062 3.938 19 C 0.447 3.553 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.053 0.947 24 C -0.019 4.019 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.257 1.257 28 H -0.278 1.278 29 H -0.228 1.228 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.416 0.584 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.092 0.908 48 H 0.343 0.657 49 H 0.078 0.922 50 H 0.119 0.881 51 H 0.390 0.610 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.900 25.602 3.367 31.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.313 6.313 5 C -0.037 4.037 6 C 0.296 3.704 7 O -0.452 6.452 8 N -0.367 5.367 9 C 0.048 3.952 10 H 0.091 0.909 11 C -0.166 4.166 12 C -0.159 4.159 13 C -0.141 4.141 14 C -0.109 4.109 15 H 0.096 0.904 16 C -0.065 4.065 17 N -0.314 5.314 18 C -0.070 4.070 19 C 0.235 3.765 20 O -0.500 6.500 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.071 0.929 24 C -0.217 4.217 25 N -0.577 5.577 26 Si 0.787 3.213 27 H -0.181 1.181 28 H -0.203 1.203 29 H -0.151 1.151 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.256 0.744 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.111 0.889 48 H 0.161 0.839 49 H 0.095 0.905 50 H 0.137 0.863 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.587 25.416 4.838 31.284 hybrid contribution -0.268 -0.701 -1.428 1.613 sum -17.854 24.715 3.410 30.680 Atomic orbital electron populations 1.21893 0.93296 1.02588 1.03030 1.22401 0.95499 0.93000 0.87602 1.22304 1.01812 0.96090 1.02939 1.88034 1.35638 1.70342 1.37253 1.22399 0.88389 0.98314 0.94639 1.20885 0.80940 0.78464 0.90112 1.90710 1.53586 1.61219 1.39637 1.46145 1.21643 1.53326 1.15596 1.21608 0.96834 0.92121 0.84640 0.90898 1.22701 0.97427 0.97939 0.98524 1.22484 0.98056 0.97661 0.97712 1.22232 0.95943 0.99164 0.96761 1.21994 0.95612 0.97658 0.95621 0.90449 1.22111 0.94851 0.94314 0.95195 1.60038 1.50787 1.07771 1.12781 1.21652 0.98317 0.96354 0.90692 1.21095 0.84814 0.88343 0.82260 1.90555 1.60416 1.55690 1.43320 1.42027 1.46059 1.27417 1.07822 1.18993 1.26122 1.06024 0.94614 0.92881 1.26168 0.96346 0.98107 1.01076 1.69812 1.35853 1.28473 1.23562 0.85333 0.80556 0.78518 0.76883 1.18093 1.20323 1.15100 0.92970 0.88972 0.92584 0.89919 0.93082 0.91970 0.89742 0.87623 0.87614 0.74428 0.92298 0.90551 0.91359 0.90502 0.91110 0.92323 0.93493 0.88939 0.83887 0.90459 0.86278 0.77402 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.56 71.98 0.69 -1.00 16 2 C 0.07 0.83 3.34 30.59 0.10 0.94 16 3 C -0.17 -1.64 9.53 71.98 0.69 -0.96 16 4 O -0.39 -7.38 9.52 -129.94 -1.24 -8.62 16 5 C 0.04 0.53 6.23 71.24 0.44 0.97 16 6 C 0.51 9.78 7.90 87.66 0.69 10.47 16 7 O -0.57 -17.12 16.18 16.01 0.26 -16.87 16 8 N -0.71 -9.96 4.46 -438.53 -1.96 -11.91 16 9 C 0.15 2.60 3.21 45.83 0.15 2.75 16 10 H 0.07 1.56 7.61 -2.38 -0.02 1.54 16 11 C -0.13 -2.08 6.52 31.67 0.21 -1.87 16 12 C -0.12 -1.88 6.91 31.89 0.22 -1.66 16 13 C -0.10 -1.86 6.15 31.67 0.19 -1.66 16 14 C -0.09 -1.50 3.11 -9.95 -0.03 -1.53 16 15 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 16 C 0.06 1.02 3.61 86.30 0.31 1.33 16 17 N -0.68 -17.13 5.91 -517.95 -3.06 -20.19 16 18 C 0.06 1.64 6.17 85.56 0.53 2.16 16 19 C 0.45 19.09 7.82 87.66 0.69 19.77 16 20 O -0.62 -33.11 15.78 -3.08 -0.05 -33.16 16 21 N -0.59 -26.68 5.09 -306.98 -1.56 -28.24 16 22 C -0.33 -18.87 10.16 84.04 0.85 -18.01 16 23 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 24 C -0.02 -1.02 5.50 84.93 0.47 -0.55 16 25 N -0.94 -55.92 13.96 21.66 0.30 -55.62 16 26 Si 0.97 37.41 27.74 68.60 1.90 39.31 16 27 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 28 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 29 H -0.23 -7.19 6.52 99.48 0.65 -6.54 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.60 7.79 -2.38 -0.02 0.58 16 34 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.06 0.51 7.87 -2.38 -0.02 0.49 16 36 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.11 0.74 7.87 -2.39 -0.02 0.72 16 38 H 0.11 0.76 8.09 -2.38 -0.02 0.74 16 39 H 0.42 3.48 5.85 -92.71 -0.54 2.94 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.15 8.06 -2.39 -0.02 1.13 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.31 7.78 -2.39 -0.02 1.29 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 0.63 7.51 -2.39 -0.02 0.61 16 47 H 0.09 1.12 7.08 -2.39 -0.02 1.10 16 48 H 0.34 9.74 8.43 -89.69 -0.76 8.99 16 49 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 51 H 0.39 14.24 5.76 -92.70 -0.53 13.70 16 52 H 0.28 15.19 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -84.48 418.16 -0.17 -84.65 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -0.96 Total: 39.49 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 6.20 Total: 11.14 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -6.28 Total: -115.96 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -1.03 Total: -58.64 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 1.90 Total: 39.31 kcal Total: -84.48 -0.17 -84.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715546637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.428 kcal (2) G-P(sol) polarization free energy of solvation -84.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds