Wall clock time and date at job start Wed Apr 1 2020 00:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.42896 * 109.47231 * 240.00235 * 2 1 3 5 5 C 1.42898 * 114.00068 * 270.00142 * 4 2 1 6 6 C 1.50698 * 109.47376 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99943 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00263 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00062 * 179.97438 * 8 6 5 10 10 H 1.08993 * 110.01902 * 325.06074 * 9 8 6 11 11 C 1.53876 * 110.03144 * 86.45647 * 9 8 6 12 12 C 1.54260 * 106.60276 * 119.28429 * 11 9 8 13 13 C 1.54887 * 104.19570 * 23.60791 * 12 11 9 14 14 C 1.54269 * 110.03042 * 203.61839 * 9 8 6 15 15 H 1.08998 * 110.48617 * 335.78500 * 14 9 8 16 16 C 1.52993 * 110.48366 * 98.42990 * 14 9 8 17 17 N 1.46898 * 109.47103 * 184.99994 * 16 14 9 18 18 C 1.46897 * 111.00353 * 180.02562 * 17 16 14 19 19 C 1.50698 * 109.47483 * 179.97438 * 18 17 16 20 20 O 1.21294 * 120.00040 * 0.02562 * 19 18 17 21 21 N 1.34783 * 120.00330 * 179.97438 * 19 18 17 22 22 C 1.37096 * 120.00076 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00124 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99703 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00209 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99782 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47055 * 89.99927 * 26 24 22 28 28 H 1.48500 * 109.47071 * 209.99829 * 26 24 22 29 29 H 1.48500 * 109.47235 * 329.99902 * 26 24 22 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47066 * 299.99587 * 5 4 2 38 38 H 1.08994 * 109.47737 * 59.99412 * 5 4 2 39 39 H 0.96997 * 119.99748 * 359.97438 * 8 6 5 40 40 H 1.09007 * 110.02878 * 238.56848 * 11 9 8 41 41 H 1.09003 * 110.03360 * 359.97438 * 11 9 8 42 42 H 1.08998 * 110.48930 * 142.28669 * 12 11 9 43 43 H 1.09002 * 110.48746 * 264.79643 * 12 11 9 44 44 H 1.08997 * 110.75646 * 80.36920 * 13 12 11 45 45 H 1.08999 * 110.75725 * 203.74387 * 13 12 11 46 46 H 1.09003 * 109.47284 * 304.99498 * 16 14 9 47 47 H 1.09004 * 109.47641 * 64.99786 * 16 14 9 48 48 H 1.00903 * 111.00149 * 303.94692 * 17 16 14 49 49 H 1.09002 * 109.46662 * 299.99715 * 18 17 16 50 50 H 1.09002 * 109.47816 * 59.99569 * 18 17 16 51 51 H 0.97001 * 119.99606 * 359.97438 * 21 19 18 52 52 H 0.97003 * 119.99511 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 -2.0781 -0.9887 6 6 2.7003 -2.6833 -2.2750 7 8 2.8733 -1.9811 -3.2485 8 7 2.9553 -4.0050 -2.3435 9 6 3.4410 -4.5934 -3.5941 10 1 2.9889 -4.0853 -4.4459 11 6 4.9741 -4.4836 -3.6678 12 6 5.5157 -5.9255 -3.7517 13 6 4.3322 -6.7431 -4.3260 14 6 3.1046 -6.0984 -3.6357 15 1 2.9851 -6.4906 -2.6258 16 6 1.8383 -6.3413 -4.4593 17 7 1.4712 -7.7618 -4.3855 18 6 0.2573 -8.0332 -5.1669 19 6 -0.0870 -9.4970 -5.0681 20 8 0.6100 -10.2410 -4.4109 21 7 -1.1701 -9.9793 -5.7091 22 6 -1.4836 -11.3109 -5.6187 23 1 -0.8625 -11.9735 -5.0343 24 6 -2.5999 -11.8082 -6.2800 25 7 -3.3554 -11.0021 -6.9915 26 14 -3.0266 -13.6227 -6.1575 27 1 -3.9250 -13.8426 -4.9956 28 1 -3.7120 -14.0551 -7.4019 29 1 -1.7822 -14.4129 -5.9776 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 2.9320 -2.2467 -0.1987 38 1 1.2539 -2.5433 -0.7125 39 1 2.8172 -4.5665 -1.5648 40 1 5.2660 -3.9228 -4.5559 41 1 5.3567 -3.9921 -2.7733 42 1 6.3732 -5.9726 -4.4230 43 1 5.7879 -6.2891 -2.7608 44 1 4.2718 -6.6273 -5.4081 45 1 4.4207 -7.7947 -4.0532 46 1 1.0244 -5.7347 -4.0619 47 1 2.0221 -6.0670 -5.4981 48 1 2.2342 -8.3486 -4.6882 49 1 -0.5676 -7.4383 -4.7748 50 1 0.4306 -7.7707 -6.2105 51 1 -1.7282 -9.3842 -6.2337 52 1 -4.1345 -11.3495 -7.4534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715546638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:23 Heat of formation + Delta-G solvation = -162.375315 kcal Electronic energy + Delta-G solvation = -29343.430484 eV Core-core repulsion = 25148.001193 eV Total energy + Delta-G solvation = -4195.429292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19593 -40.19046 -39.56867 -38.65808 -36.52077 -35.76139 -34.66890 -33.68363 -33.27201 -31.23425 -29.85514 -28.18340 -28.11647 -27.49072 -26.03054 -24.00515 -22.28272 -22.22468 -21.36647 -20.92364 -20.81313 -19.90626 -18.19753 -18.16923 -17.85789 -17.22803 -16.98818 -16.93020 -16.46692 -16.06704 -15.94644 -15.79564 -15.40032 -15.24003 -14.94698 -14.86851 -14.46345 -14.42221 -13.95986 -13.84659 -13.55156 -13.53206 -13.47285 -13.09308 -13.06062 -12.94069 -12.85697 -12.74319 -12.47797 -12.40296 -12.33618 -12.11776 -11.99520 -11.68009 -11.64313 -11.57400 -11.50318 -11.45537 -10.83648 -10.64278 -10.35616 -10.07929 -10.01980 -9.35334 -8.46750 -5.95785 1.38423 1.42217 1.55112 1.57428 1.83718 2.04594 2.29109 2.87159 3.01871 3.20467 3.44426 3.61263 3.64129 3.80794 3.88548 4.02159 4.10559 4.21502 4.28291 4.29635 4.30391 4.32650 4.37491 4.47320 4.48967 4.54381 4.56989 4.58952 4.69714 4.74741 4.81421 4.83340 4.90765 4.91181 4.94566 5.05318 5.13380 5.21726 5.27392 5.29265 5.32931 5.40798 5.45850 5.58894 5.87350 6.08535 6.16997 6.40836 6.57038 6.59473 7.12079 7.24332 7.55673 8.10465 8.70627 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.001817 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.668907 B =15407.387249 C =17121.301581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 C -0.150 4.150 4 O -0.394 6.394 5 C 0.043 3.957 6 C 0.509 3.491 7 O -0.574 6.574 8 N -0.708 5.708 9 C 0.151 3.849 10 H 0.071 0.929 11 C -0.128 4.128 12 C -0.114 4.114 13 C -0.123 4.123 14 C -0.083 4.083 15 H 0.097 0.903 16 C 0.069 3.931 17 N -0.675 5.675 18 C 0.063 3.937 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.574 5.574 22 C -0.335 4.335 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.416 0.584 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.034 0.966 48 H 0.346 0.654 49 H 0.101 0.899 50 H 0.063 0.937 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.064 21.026 13.913 28.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 C -0.207 4.207 4 O -0.313 6.313 5 C -0.036 4.036 6 C 0.296 3.704 7 O -0.453 6.453 8 N -0.362 5.362 9 C 0.046 3.954 10 H 0.089 0.911 11 C -0.167 4.167 12 C -0.151 4.151 13 C -0.161 4.161 14 C -0.102 4.102 15 H 0.115 0.885 16 C -0.060 4.060 17 N -0.308 5.308 18 C -0.070 4.070 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.818 3.182 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.254 0.746 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.052 0.948 48 H 0.165 0.835 49 H 0.119 0.881 50 H 0.081 0.919 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.159 21.181 13.959 28.577 hybrid contribution -0.614 -0.826 -0.985 1.425 sum 12.544 20.355 12.975 27.203 Atomic orbital electron populations 1.22319 0.95433 1.02655 1.02929 1.22399 0.94175 0.94220 0.87635 1.21886 1.01634 0.94165 1.03007 1.88034 1.87041 1.18894 1.37346 1.22381 1.03081 0.83429 0.94696 1.20866 0.76880 0.82479 0.90164 1.90711 1.53246 1.61773 1.39525 1.45970 1.67212 1.07725 1.15281 1.21536 0.94489 0.92693 0.86685 0.91122 1.22496 0.93936 0.97949 1.02304 1.22292 0.97550 0.93421 1.01868 1.22566 0.93736 0.99826 0.99924 1.22148 0.93954 0.92998 1.01104 0.88453 1.22045 0.97463 0.88139 0.98360 1.60102 1.06263 1.05782 1.58639 1.21538 0.95605 0.92255 0.97579 1.20825 0.82584 0.91099 0.82867 1.90483 1.53392 1.61064 1.45786 1.41947 1.24646 1.09401 1.45097 1.19691 1.10484 0.85724 1.30518 0.90152 1.26065 0.95353 1.04456 0.95472 1.69680 1.17014 1.37394 1.32104 0.84907 0.78341 0.76870 0.78089 1.19635 1.19616 1.19653 0.92274 0.89628 0.93222 0.89734 0.93123 0.88909 0.92316 0.87218 0.88145 0.74601 0.91955 0.91191 0.90771 0.90469 0.91489 0.90784 0.91108 0.94770 0.83510 0.88076 0.91928 0.77045 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 9.53 71.98 0.69 -1.32 16 2 C 0.07 0.91 3.34 30.59 0.10 1.01 16 3 C -0.15 -1.72 9.56 71.98 0.69 -1.03 16 4 O -0.39 -7.86 9.52 -129.94 -1.24 -9.10 16 5 C 0.04 0.61 6.23 71.24 0.44 1.05 16 6 C 0.51 10.54 7.90 87.66 0.69 11.23 16 7 O -0.57 -18.01 16.18 16.01 0.26 -17.75 16 8 N -0.71 -10.98 4.99 -439.10 -2.19 -13.18 16 9 C 0.15 2.76 2.79 45.72 0.13 2.88 16 10 H 0.07 1.64 7.30 -2.39 -0.02 1.62 16 11 C -0.13 -2.12 6.58 31.32 0.21 -1.92 16 12 C -0.11 -1.62 6.83 31.67 0.22 -1.40 16 13 C -0.12 -2.10 5.69 31.89 0.18 -1.92 16 14 C -0.08 -1.50 2.79 -9.72 -0.03 -1.52 16 15 H 0.10 1.70 7.73 -2.39 -0.02 1.69 16 16 C 0.07 1.57 5.02 86.30 0.43 2.00 16 17 N -0.68 -20.45 6.13 -517.94 -3.17 -23.62 16 18 C 0.06 2.15 6.17 85.56 0.53 2.68 16 19 C 0.44 20.82 7.82 87.66 0.69 21.50 16 20 O -0.62 -34.01 15.78 -3.07 -0.05 -34.06 16 21 N -0.57 -29.54 5.29 -306.98 -1.62 -31.16 16 22 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 25 N -0.92 -49.87 13.05 21.66 0.28 -49.58 16 26 Si 0.99 42.82 29.55 68.60 2.03 44.84 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 30 H 0.06 0.65 7.87 -2.39 -0.02 0.63 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.65 7.79 -2.39 -0.02 0.63 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.82 8.09 -2.39 -0.02 0.80 16 38 H 0.10 0.97 7.87 -2.39 -0.02 0.95 16 39 H 0.42 3.96 8.34 -92.71 -0.77 3.19 16 40 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.07 1.13 7.92 -2.39 -0.02 1.11 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.19 7.97 -2.39 -0.02 1.17 16 45 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 46 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.03 0.77 8.02 -2.39 -0.02 0.75 16 48 H 0.35 10.90 7.72 -89.69 -0.69 10.21 16 49 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 50 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.40 19.44 7.90 -92.71 -0.73 18.70 16 52 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -76.16 424.81 -0.73 -76.90 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -1.27 Total: 41.94 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 6.24 Total: 14.77 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -6.71 Total: -117.54 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -1.03 Total: -60.91 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -76.16 -0.73 -76.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715546638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.479 kcal (2) G-P(sol) polarization free energy of solvation -76.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds