Wall clock time and date at job start Wed Apr 1 2020 00:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47326 * 2 1 4 4 O 1.42901 * 109.47437 * 120.00346 * 2 1 3 5 5 C 1.42898 * 114.00368 * 149.99455 * 4 2 1 6 6 C 1.50703 * 109.47175 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99848 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00073 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99983 * 180.02562 * 8 6 5 10 10 H 1.08991 * 110.02013 * 33.60871 * 9 8 6 11 11 C 1.54267 * 110.07035 * 272.18797 * 9 8 6 12 12 C 1.54891 * 104.19831 * 264.30154 * 11 9 8 13 13 C 1.54964 * 102.78015 * 322.08783 * 12 11 9 14 14 C 1.53878 * 110.03325 * 155.00053 * 9 8 6 15 15 H 1.09007 * 110.03095 * 359.97438 * 14 9 8 16 16 C 1.52993 * 110.03407 * 238.61804 * 14 9 8 17 17 N 1.46901 * 109.47323 * 175.68623 * 16 14 9 18 18 C 1.46904 * 110.99695 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.46676 * 180.02562 * 18 17 16 20 20 O 1.21288 * 120.00284 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99730 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99910 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99959 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00053 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99930 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47389 * 300.00155 * 26 24 22 29 29 H 1.48504 * 109.47102 * 60.00503 * 26 24 22 30 30 H 1.09001 * 109.46843 * 300.00244 * 1 2 3 31 31 H 1.08999 * 109.46957 * 59.99930 * 1 2 3 32 32 H 1.08991 * 109.46966 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47124 * 240.00204 * 2 1 3 34 34 H 1.09002 * 109.47370 * 300.00422 * 3 2 1 35 35 H 1.09001 * 109.47359 * 60.00071 * 3 2 1 36 36 H 1.09003 * 109.47358 * 180.02562 * 3 2 1 37 37 H 1.09009 * 109.46721 * 60.00158 * 5 4 2 38 38 H 1.08997 * 109.47399 * 300.00179 * 5 4 2 39 39 H 0.97005 * 120.00099 * 359.97438 * 8 6 5 40 40 H 1.08994 * 110.48749 * 22.98134 * 11 9 8 41 41 H 1.09001 * 110.48179 * 145.49542 * 11 9 8 42 42 H 1.09005 * 110.75438 * 80.37463 * 12 11 9 43 43 H 1.09002 * 110.75785 * 203.74259 * 12 11 9 44 44 H 1.08997 * 110.47640 * 279.23655 * 13 12 11 45 45 H 1.08994 * 110.53508 * 156.56210 * 13 12 11 46 46 H 1.08998 * 109.47256 * 55.68680 * 16 14 9 47 47 H 1.09001 * 109.47023 * 295.69197 * 16 14 9 48 48 H 1.00889 * 111.00472 * 303.95321 * 17 16 14 49 49 H 1.08996 * 109.47230 * 60.00720 * 18 17 16 50 50 H 1.09002 * 109.47146 * 299.99952 * 18 17 16 51 51 H 0.96996 * 119.99887 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99781 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9885 6 6 3.6699 -1.9980 2.2748 7 8 2.9498 -1.9278 3.2481 8 7 4.8314 -2.6781 2.3435 9 6 5.2238 -3.3332 3.5938 10 1 4.3399 -3.6956 4.1185 11 6 6.0011 -2.3451 4.4878 12 6 7.4893 -2.6448 4.1806 13 6 7.5031 -4.1863 4.0229 14 6 6.1784 -4.5034 3.2987 15 1 6.3494 -4.5842 2.2252 16 6 5.5879 -5.8093 3.8342 17 7 6.4576 -6.9313 3.4563 18 6 5.9210 -8.2045 3.9553 19 6 6.8380 -9.3295 3.5496 20 8 7.8402 -9.0938 2.9083 21 7 6.5451 -10.5974 3.9002 22 6 7.3790 -11.6209 3.5308 23 1 8.2710 -11.4111 2.9590 24 6 7.0768 -12.9282 3.8918 25 7 5.9912 -13.1836 4.5870 26 14 8.2135 -14.3226 3.3889 27 1 7.6714 -15.6097 3.8939 28 1 8.3104 -14.3727 1.9080 29 1 9.5626 -14.0940 3.9659 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 4.0201 -0.5874 0.7123 38 1 3.1809 -2.0708 0.1985 39 1 5.4072 -2.7346 1.5649 40 1 5.7563 -1.3167 4.2223 41 1 5.7821 -2.5291 5.5396 42 1 7.7979 -2.1596 3.2545 43 1 8.1250 -2.3355 5.0103 44 1 7.5289 -4.6693 4.9997 45 1 8.3534 -4.5011 3.4179 46 1 4.5953 -5.9601 3.4100 47 1 5.5145 -5.7563 4.9205 48 1 6.5936 -6.9627 2.4571 49 1 4.9306 -8.3721 3.5322 50 1 5.8503 -8.1679 5.0424 51 1 5.7438 -10.7859 4.4134 52 1 5.4012 -12.4594 4.8484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715546640.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:28 Heat of formation + Delta-G solvation = -134.929017 kcal Electronic energy + Delta-G solvation = -29305.652310 eV Core-core repulsion = 25111.413179 eV Total energy + Delta-G solvation = -4194.239131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.45664 -39.02639 -38.40554 -37.86146 -35.33477 -34.18418 -33.74742 -33.19678 -31.12658 -30.14361 -29.15208 -27.72765 -27.06169 -26.39692 -24.18984 -22.84753 -21.80425 -21.55890 -20.40373 -20.15197 -19.58185 -17.91310 -17.49134 -17.46436 -16.78276 -16.40848 -16.12570 -15.64747 -15.27446 -15.20211 -14.83598 -14.63694 -14.38527 -13.96165 -13.85919 -13.82407 -13.58878 -13.50872 -13.33148 -13.05535 -12.65806 -12.60207 -12.44120 -12.11789 -11.94150 -11.78211 -11.70152 -11.50810 -11.21241 -11.19594 -11.16753 -11.02096 -10.96084 -10.83131 -10.71696 -10.20579 -10.13844 -10.01353 -9.86518 -9.54531 -9.33933 -8.52014 -8.12615 -8.02696 -6.75183 -3.88381 2.31235 2.43725 3.31140 3.34894 3.53569 3.55408 3.84642 3.98811 4.25301 4.30674 4.40937 4.46170 4.52348 4.58689 4.64511 4.65275 4.69510 4.76643 4.99608 5.04435 5.12519 5.20320 5.22784 5.23493 5.29771 5.31456 5.35990 5.37649 5.41746 5.49088 5.64498 5.69731 5.70376 5.71417 5.75514 5.78935 5.86138 5.86552 5.92419 6.02821 6.18272 6.26234 6.33989 6.65655 7.10616 7.17615 7.57674 7.80886 7.92987 8.08151 8.60441 8.80047 9.47895 9.88018 10.68240 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.001674 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.215234 B =16721.530677 C =17793.710130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.176 4.176 4 O -0.357 6.357 5 C 0.043 3.957 6 C 0.513 3.487 7 O -0.517 6.517 8 N -0.722 5.722 9 C 0.146 3.854 10 H 0.093 0.907 11 C -0.131 4.131 12 C -0.128 4.128 13 C -0.105 4.105 14 C -0.093 4.093 15 H 0.078 0.922 16 C 0.066 3.934 17 N -0.665 5.665 18 C 0.050 3.950 19 C 0.444 3.556 20 O -0.577 6.577 21 N -0.576 5.576 22 C -0.383 4.383 23 H 0.099 0.901 24 C -0.010 4.010 25 N -0.901 5.901 26 Si 1.092 2.908 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.400 0.600 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.027 0.973 47 H 0.075 0.925 48 H 0.348 0.652 49 H 0.042 0.958 50 H 0.085 0.915 51 H 0.376 0.624 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.597 28.095 -7.839 29.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.037 4.037 6 C 0.298 3.702 7 O -0.392 6.392 8 N -0.375 5.375 9 C 0.041 3.959 10 H 0.111 0.889 11 C -0.170 4.170 12 C -0.165 4.165 13 C -0.143 4.143 14 C -0.112 4.112 15 H 0.096 0.904 16 C -0.064 4.064 17 N -0.297 5.297 18 C -0.082 4.082 19 C 0.229 3.771 20 O -0.461 6.461 21 N -0.214 5.214 22 C -0.512 4.512 23 H 0.117 0.883 24 C -0.212 4.212 25 N -0.540 5.540 26 Si 0.918 3.082 27 H -0.204 1.204 28 H -0.211 1.211 29 H -0.210 1.210 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.093 0.907 48 H 0.167 0.833 49 H 0.060 0.940 50 H 0.104 0.896 51 H 0.209 0.791 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.922 26.710 -6.763 28.182 hybrid contribution -1.065 1.457 -1.045 2.085 sum -6.987 28.167 -7.807 30.052 Atomic orbital electron populations 1.21856 0.93172 1.03021 1.02682 1.22188 0.95456 0.92470 0.87794 1.22316 1.01460 0.96721 1.02876 1.88074 1.34521 1.69684 1.35297 1.22241 0.88357 0.97164 0.95921 1.20261 0.81197 0.79053 0.89732 1.90744 1.51786 1.59050 1.37593 1.46068 1.21921 1.54457 1.15088 1.21656 0.98046 0.91830 0.84375 0.88931 1.22746 0.95284 0.99059 0.99883 1.22585 0.95923 0.96716 1.01312 1.22311 0.96316 0.94311 1.01357 1.22025 0.95290 0.93050 1.00872 0.90362 1.22069 0.93519 0.89899 1.00885 1.60036 1.48272 1.01204 1.20189 1.21670 0.95816 0.89710 1.01037 1.19731 0.88374 0.83342 0.85620 1.90519 1.28674 1.83311 1.43568 1.41940 1.23929 1.05917 1.49608 1.20535 1.07213 0.87488 1.35993 0.88336 1.26516 0.99748 0.99096 0.95839 1.70901 1.12272 1.35121 1.35696 0.83126 0.74285 0.74550 0.76263 1.20416 1.21051 1.20991 0.91560 0.91075 0.91803 0.92001 0.91447 0.91536 0.92525 0.90407 0.90256 0.76585 0.91501 0.90622 0.91839 0.91452 0.90701 0.90856 0.95526 0.90701 0.83298 0.94021 0.89642 0.79144 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.56 37.16 0.36 -0.56 16 2 C 0.08 0.52 3.34 -26.73 -0.09 0.43 16 3 C -0.18 -0.96 9.53 37.15 0.35 -0.61 16 4 O -0.36 -3.57 9.52 -55.14 -0.52 -4.09 16 5 C 0.04 0.32 6.23 36.01 0.22 0.55 16 6 C 0.51 5.32 7.90 -10.99 -0.09 5.23 16 7 O -0.52 -7.84 16.15 -14.35 -0.23 -8.08 16 8 N -0.72 -5.81 5.03 -52.73 -0.27 -6.08 16 9 C 0.15 1.37 2.90 -66.81 -0.19 1.18 16 10 H 0.09 1.06 7.09 -51.93 -0.37 0.69 16 11 C -0.13 -1.17 6.54 -25.07 -0.16 -1.34 16 12 C -0.13 -1.05 6.91 -24.70 -0.17 -1.22 16 13 C -0.11 -1.04 6.18 -25.03 -0.15 -1.20 16 14 C -0.09 -0.90 2.86 -89.50 -0.26 -1.15 16 15 H 0.08 0.71 7.62 -51.92 -0.40 0.31 16 16 C 0.07 0.78 4.74 -3.83 -0.02 0.77 16 17 N -0.66 -10.29 5.93 -115.06 -0.68 -10.98 16 18 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 19 C 0.44 10.48 7.82 -10.98 -0.09 10.40 16 20 O -0.58 -15.70 15.78 5.55 0.09 -15.61 16 21 N -0.58 -14.58 5.28 -10.96 -0.06 -14.63 16 22 C -0.38 -10.83 9.68 -14.93 -0.14 -10.97 16 23 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 24 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 25 N -0.90 -25.36 13.68 55.50 0.76 -24.60 16 26 Si 1.09 24.31 29.92 -169.99 -5.09 19.23 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 29 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.31 7.79 -51.93 -0.40 -0.10 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.29 7.87 -51.93 -0.41 -0.12 16 37 H 0.08 0.39 7.87 -51.92 -0.41 -0.02 16 38 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 39 H 0.40 2.11 8.32 -40.82 -0.34 1.77 16 40 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.84 7.77 -51.93 -0.40 0.43 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.88 8.02 -51.93 -0.42 0.47 16 48 H 0.35 5.55 8.43 -39.30 -0.33 5.21 16 49 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 51 H 0.38 8.80 6.73 -40.82 -0.27 8.52 16 52 H 0.26 7.08 6.78 -40.82 -0.28 6.80 16 LS Contribution 423.75 15.07 6.39 6.39 Total: -1.00 -35.93 423.75 -9.28 -45.22 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -9.11 Total: 11.25 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.56 Total: 1.99 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.25 Total: -56.29 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.67 Total: -27.78 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.09 Total: 19.23 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -35.93 -9.28 -45.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715546640.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.713 kcal (2) G-P(sol) polarization free energy of solvation -35.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds