Wall clock time and date at job start Wed Apr 1 2020 00:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47326 * 2 1 4 4 O 1.42901 * 109.47437 * 120.00346 * 2 1 3 5 5 C 1.42898 * 114.00368 * 149.99455 * 4 2 1 6 6 C 1.50703 * 109.47175 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99848 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00073 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99983 * 180.02562 * 8 6 5 10 10 H 1.08991 * 110.02013 * 33.60871 * 9 8 6 11 11 C 1.54267 * 110.07035 * 272.18797 * 9 8 6 12 12 C 1.54891 * 104.19831 * 264.30154 * 11 9 8 13 13 C 1.54964 * 102.78015 * 322.08783 * 12 11 9 14 14 C 1.53878 * 110.03325 * 155.00053 * 9 8 6 15 15 H 1.09007 * 110.03095 * 359.97438 * 14 9 8 16 16 C 1.52993 * 110.03407 * 238.61804 * 14 9 8 17 17 N 1.46901 * 109.47323 * 175.68623 * 16 14 9 18 18 C 1.46904 * 110.99695 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.46676 * 180.02562 * 18 17 16 20 20 O 1.21288 * 120.00284 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99730 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99910 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99959 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00053 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99930 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47389 * 300.00155 * 26 24 22 29 29 H 1.48504 * 109.47102 * 60.00503 * 26 24 22 30 30 H 1.09001 * 109.46843 * 300.00244 * 1 2 3 31 31 H 1.08999 * 109.46957 * 59.99930 * 1 2 3 32 32 H 1.08991 * 109.46966 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47124 * 240.00204 * 2 1 3 34 34 H 1.09002 * 109.47370 * 300.00422 * 3 2 1 35 35 H 1.09001 * 109.47359 * 60.00071 * 3 2 1 36 36 H 1.09003 * 109.47358 * 180.02562 * 3 2 1 37 37 H 1.09009 * 109.46721 * 60.00158 * 5 4 2 38 38 H 1.08997 * 109.47399 * 300.00179 * 5 4 2 39 39 H 0.97005 * 120.00099 * 359.97438 * 8 6 5 40 40 H 1.08994 * 110.48749 * 22.98134 * 11 9 8 41 41 H 1.09001 * 110.48179 * 145.49542 * 11 9 8 42 42 H 1.09005 * 110.75438 * 80.37463 * 12 11 9 43 43 H 1.09002 * 110.75785 * 203.74259 * 12 11 9 44 44 H 1.08997 * 110.47640 * 279.23655 * 13 12 11 45 45 H 1.08994 * 110.53508 * 156.56210 * 13 12 11 46 46 H 1.08998 * 109.47256 * 55.68680 * 16 14 9 47 47 H 1.09001 * 109.47023 * 295.69197 * 16 14 9 48 48 H 1.00889 * 111.00472 * 303.95321 * 17 16 14 49 49 H 1.08996 * 109.47230 * 60.00720 * 18 17 16 50 50 H 1.09002 * 109.47146 * 299.99952 * 18 17 16 51 51 H 0.96996 * 119.99887 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99781 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9885 6 6 3.6699 -1.9980 2.2748 7 8 2.9498 -1.9278 3.2481 8 7 4.8314 -2.6781 2.3435 9 6 5.2238 -3.3332 3.5938 10 1 4.3399 -3.6956 4.1185 11 6 6.0011 -2.3451 4.4878 12 6 7.4893 -2.6448 4.1806 13 6 7.5031 -4.1863 4.0229 14 6 6.1784 -4.5034 3.2987 15 1 6.3494 -4.5842 2.2252 16 6 5.5879 -5.8093 3.8342 17 7 6.4576 -6.9313 3.4563 18 6 5.9210 -8.2045 3.9553 19 6 6.8380 -9.3295 3.5496 20 8 7.8402 -9.0938 2.9083 21 7 6.5451 -10.5974 3.9002 22 6 7.3790 -11.6209 3.5308 23 1 8.2710 -11.4111 2.9590 24 6 7.0768 -12.9282 3.8918 25 7 5.9912 -13.1836 4.5870 26 14 8.2135 -14.3226 3.3889 27 1 7.6714 -15.6097 3.8939 28 1 8.3104 -14.3727 1.9080 29 1 9.5626 -14.0940 3.9659 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 4.0201 -0.5874 0.7123 38 1 3.1809 -2.0708 0.1985 39 1 5.4072 -2.7346 1.5649 40 1 5.7563 -1.3167 4.2223 41 1 5.7821 -2.5291 5.5396 42 1 7.7979 -2.1596 3.2545 43 1 8.1250 -2.3355 5.0103 44 1 7.5289 -4.6693 4.9997 45 1 8.3534 -4.5011 3.4179 46 1 4.5953 -5.9601 3.4100 47 1 5.5145 -5.7563 4.9205 48 1 6.5936 -6.9627 2.4571 49 1 4.9306 -8.3721 3.5322 50 1 5.8503 -8.1679 5.0424 51 1 5.7438 -10.7859 4.4134 52 1 5.4012 -12.4594 4.8484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715546640.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:27 Heat of formation + Delta-G solvation = -161.398183 kcal Electronic energy + Delta-G solvation = -29306.800099 eV Core-core repulsion = 25111.413179 eV Total energy + Delta-G solvation = -4195.386920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24760 -40.34707 -39.61848 -38.68321 -36.75625 -36.01249 -34.60316 -33.69712 -33.14919 -31.22433 -29.85562 -28.20807 -28.05543 -27.54364 -25.94864 -24.00861 -22.31952 -22.25756 -21.64319 -21.03200 -20.91578 -19.97083 -18.41460 -18.13360 -17.96560 -17.36317 -17.03137 -16.79566 -16.69521 -16.10867 -15.97806 -15.59480 -15.46702 -15.28820 -15.10706 -14.89660 -14.87789 -14.46263 -14.11083 -13.90936 -13.55171 -13.37111 -13.25080 -13.10822 -13.05681 -12.91546 -12.75623 -12.61887 -12.41894 -12.35633 -11.93151 -11.91482 -11.89416 -11.84980 -11.70550 -11.65542 -11.51988 -11.49011 -10.85993 -10.65858 -10.41869 -10.11763 -10.10945 -9.39544 -8.92951 -6.07086 1.52809 1.54600 1.55028 1.79338 1.83274 2.00221 2.40459 2.76856 2.99873 3.16627 3.31874 3.60985 3.66003 3.77236 3.83178 4.00503 4.08376 4.09788 4.18935 4.22971 4.26791 4.28701 4.31249 4.39722 4.45644 4.51098 4.55734 4.61306 4.73164 4.73764 4.80093 4.81249 4.86737 4.89808 4.92518 5.01687 5.09174 5.21839 5.27504 5.31497 5.37273 5.49536 5.56329 5.58442 5.90219 5.97054 6.14872 6.33653 6.54165 6.57407 6.73923 7.21689 7.43887 7.91481 8.54589 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.001674 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.215234 B =16721.530677 C =17793.710130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.072 3.928 3 C -0.173 4.173 4 O -0.394 6.394 5 C 0.044 3.956 6 C 0.509 3.491 7 O -0.574 6.574 8 N -0.706 5.706 9 C 0.150 3.850 10 H 0.071 0.929 11 C -0.128 4.128 12 C -0.117 4.117 13 C -0.105 4.105 14 C -0.083 4.083 15 H 0.091 0.909 16 C 0.069 3.931 17 N -0.673 5.673 18 C 0.064 3.936 19 C 0.443 3.557 20 O -0.615 6.615 21 N -0.587 5.587 22 C -0.411 4.411 23 H 0.075 0.925 24 C -0.043 4.043 25 N -0.917 5.917 26 Si 1.134 2.866 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.273 1.273 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.416 0.584 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.031 0.969 47 H 0.075 0.925 48 H 0.345 0.655 49 H 0.064 0.936 50 H 0.102 0.898 51 H 0.384 0.616 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 29.127 -9.270 31.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.314 6.314 5 C -0.035 4.035 6 C 0.296 3.704 7 O -0.453 6.453 8 N -0.361 5.361 9 C 0.045 3.955 10 H 0.089 0.911 11 C -0.166 4.166 12 C -0.154 4.154 13 C -0.142 4.142 14 C -0.102 4.102 15 H 0.109 0.891 16 C -0.060 4.060 17 N -0.306 5.306 18 C -0.069 4.069 19 C 0.231 3.769 20 O -0.501 6.501 21 N -0.227 5.227 22 C -0.541 4.541 23 H 0.093 0.907 24 C -0.241 4.241 25 N -0.556 5.556 26 Si 0.954 3.046 27 H -0.198 1.198 28 H -0.197 1.197 29 H -0.198 1.198 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.254 0.746 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.094 0.906 48 H 0.164 0.836 49 H 0.082 0.918 50 H 0.120 0.880 51 H 0.218 0.782 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.574 27.770 -8.213 29.490 hybrid contribution -1.185 1.221 -0.605 1.806 sum -6.759 28.990 -8.818 31.047 Atomic orbital electron populations 1.21897 0.93343 1.02552 1.03055 1.22403 0.95476 0.93040 0.87570 1.22299 1.01813 0.96020 1.02960 1.88038 1.35698 1.70354 1.37302 1.22382 0.88365 0.98280 0.94496 1.20895 0.80856 0.78528 0.90170 1.90719 1.53555 1.61262 1.39725 1.45929 1.21587 1.53316 1.15226 1.21483 0.97102 0.91978 0.84971 0.91059 1.22695 0.95767 0.98630 0.99534 1.22523 0.95294 0.95325 1.02271 1.22262 0.96034 0.95541 1.00403 1.21922 0.94985 0.91854 1.01449 0.89125 1.22115 0.93267 0.89530 1.01094 1.60038 1.49421 1.01102 1.20012 1.21538 0.94966 0.88257 1.02100 1.20824 0.88348 0.84007 0.83757 1.90490 1.30616 1.84043 1.44906 1.42006 1.24113 1.06242 1.50293 1.20545 1.07491 0.88973 1.37058 0.90732 1.27850 1.00280 1.01019 0.94921 1.70974 1.12877 1.35239 1.36532 0.82623 0.73106 0.72085 0.76779 1.19818 1.19699 1.19820 0.93008 0.88878 0.92674 0.89907 0.89675 0.93118 0.91927 0.87513 0.87689 0.74599 0.91781 0.91106 0.90383 0.90929 0.92146 0.91546 0.95035 0.90609 0.83606 0.91831 0.87967 0.78202 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.56 71.98 0.69 -1.04 16 2 C 0.07 0.84 3.34 30.59 0.10 0.94 16 3 C -0.17 -1.60 9.53 71.98 0.69 -0.91 16 4 O -0.39 -7.53 9.52 -129.94 -1.24 -8.77 16 5 C 0.04 0.56 6.23 71.24 0.44 1.01 16 6 C 0.51 10.04 7.90 87.66 0.69 10.73 16 7 O -0.57 -17.69 16.15 16.01 0.26 -17.43 16 8 N -0.71 -10.14 5.03 -439.12 -2.21 -12.35 16 9 C 0.15 2.67 2.90 45.72 0.13 2.80 16 10 H 0.07 1.63 7.09 -2.39 -0.02 1.61 16 11 C -0.13 -2.15 6.54 31.67 0.21 -1.94 16 12 C -0.12 -1.70 6.91 31.91 0.22 -1.48 16 13 C -0.10 -1.94 6.18 31.70 0.20 -1.74 16 14 C -0.08 -1.47 2.86 -10.07 -0.03 -1.49 16 15 H 0.09 1.41 7.62 -2.38 -0.02 1.39 16 16 C 0.07 1.54 4.74 86.30 0.41 1.95 16 17 N -0.67 -20.02 5.93 -517.92 -3.07 -23.09 16 18 C 0.06 2.15 6.17 85.56 0.53 2.68 16 19 C 0.44 20.91 7.82 87.66 0.69 21.59 16 20 O -0.61 -33.78 15.78 -3.05 -0.05 -33.83 16 21 N -0.59 -29.95 5.28 -306.98 -1.62 -31.57 16 22 C -0.41 -23.58 9.68 84.04 0.81 -22.76 16 23 H 0.07 4.56 7.16 -2.91 -0.02 4.54 16 24 C -0.04 -2.32 5.50 84.93 0.47 -1.85 16 25 N -0.92 -51.44 13.68 21.66 0.30 -51.15 16 26 Si 1.13 48.45 29.92 68.60 2.05 50.51 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.59 7.79 -2.39 -0.02 0.57 16 34 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.49 7.87 -2.39 -0.02 0.47 16 37 H 0.11 0.72 7.87 -2.38 -0.02 0.70 16 38 H 0.11 0.78 8.08 -2.39 -0.02 0.76 16 39 H 0.42 3.22 8.32 -92.70 -0.77 2.45 16 40 H 0.06 1.13 8.04 -2.39 -0.02 1.11 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 1.30 7.77 -2.39 -0.02 1.28 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 1.70 8.02 -2.39 -0.02 1.68 16 48 H 0.35 10.61 8.43 -89.70 -0.76 9.85 16 49 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 51 H 0.38 18.05 6.73 -92.71 -0.62 17.42 16 52 H 0.26 14.06 6.78 -92.71 -0.63 13.43 16 Total: -1.00 -79.61 423.75 -0.42 -80.03 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: -1.08 Total: 39.16 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.24 Total: 8.49 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -6.61 Total: -118.16 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -1.03 Total: -60.03 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.05 Total: 50.51 kcal Total: -79.61 -0.42 -80.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715546640.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.366 kcal (2) G-P(sol) polarization free energy of solvation -79.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds