Wall clock time and date at job start Wed Apr 1 2020 00:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47592 * 2 1 4 4 O 1.42899 * 109.46971 * 120.00008 * 2 1 3 5 5 C 1.42908 * 113.99940 * 89.99459 * 4 2 1 6 6 C 1.50706 * 109.46915 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99805 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99795 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99882 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.01651 * 326.38322 * 9 8 6 11 11 C 1.54264 * 110.03662 * 87.82819 * 9 8 6 12 12 C 1.54887 * 104.19812 * 142.89102 * 11 9 8 13 13 C 1.54964 * 102.77692 * 322.08901 * 12 11 9 14 14 C 1.53876 * 110.03089 * 204.99796 * 9 8 6 15 15 H 1.08998 * 110.03553 * 121.38112 * 14 9 8 16 16 C 1.52998 * 110.03574 * 359.97438 * 14 9 8 17 17 N 1.46896 * 109.47624 * 175.69107 * 16 14 9 18 18 C 1.46899 * 111.00338 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.46987 * 179.97438 * 18 17 16 20 20 O 1.21293 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99773 * 179.72591 * 21 19 18 23 23 H 1.08002 * 119.99671 * 0.27660 * 22 21 19 24 24 C 1.38950 * 120.00030 * 180.27703 * 22 21 19 25 25 N 1.31413 * 119.99930 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47112 * 89.99702 * 26 24 22 28 28 H 1.48498 * 109.47011 * 209.99970 * 26 24 22 29 29 H 1.48494 * 109.47201 * 329.99943 * 26 24 22 30 30 H 1.09004 * 109.46748 * 300.00507 * 1 2 3 31 31 H 1.09003 * 109.46778 * 59.99438 * 1 2 3 32 32 H 1.08993 * 109.47694 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46748 * 239.99493 * 2 1 3 34 34 H 1.09001 * 109.47445 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46792 * 299.99937 * 3 2 1 36 36 H 1.08995 * 109.47400 * 60.00056 * 3 2 1 37 37 H 1.09001 * 109.47051 * 60.00471 * 5 4 2 38 38 H 1.09000 * 109.47175 * 299.99585 * 5 4 2 39 39 H 0.96997 * 120.00271 * 359.97438 * 8 6 5 40 40 H 1.08993 * 110.48715 * 261.57442 * 11 9 8 41 41 H 1.09002 * 110.48222 * 24.08470 * 11 9 8 42 42 H 1.09002 * 110.75173 * 80.37626 * 12 11 9 43 43 H 1.08999 * 110.76059 * 203.56104 * 12 11 9 44 44 H 1.09004 * 110.47366 * 279.22856 * 13 12 11 45 45 H 1.09002 * 110.52787 * 156.56447 * 13 12 11 46 46 H 1.09004 * 109.46677 * 55.69271 * 16 14 9 47 47 H 1.09004 * 109.46850 * 295.69570 * 16 14 9 48 48 H 1.00900 * 110.99693 * 56.04421 * 17 16 14 49 49 H 1.09003 * 109.46477 * 60.00383 * 18 17 16 50 50 H 1.08993 * 109.47002 * 300.00709 * 18 17 16 51 51 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 52 52 H 0.96999 * 119.99993 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 -2.0783 0.9886 6 6 2.7001 -2.6835 2.2750 7 8 2.8741 -1.9811 3.2483 8 7 2.9550 -4.0052 2.3435 9 6 3.4417 -4.5934 3.5938 10 1 4.0776 -3.8806 4.1188 11 6 2.2505 -4.9979 4.4865 12 6 2.7095 -6.3158 5.1585 13 6 3.4876 -7.0268 4.0224 14 6 4.2277 -5.8830 3.2987 15 1 5.2449 -5.7960 3.6805 16 6 4.2542 -6.1475 1.7919 17 7 5.0925 -7.3216 1.5155 18 6 5.1409 -7.6066 0.0752 19 6 6.0085 -8.8144 -0.1690 20 8 6.5344 -9.3822 0.7650 21 7 6.1993 -9.2642 -1.4251 22 6 6.9931 -10.3596 -1.6478 23 1 7.4620 -10.8647 -0.8162 24 6 7.1945 -10.8199 -2.9433 25 7 7.9558 -11.8695 -3.1567 26 14 6.3841 -9.9457 -4.3815 27 1 7.2870 -8.8798 -4.8853 28 1 6.1171 -10.9226 -5.4676 29 1 5.1040 -9.3399 -3.9350 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9562 -0.8900 36 1 1.6769 1.9563 0.8899 37 1 2.9318 -2.2469 0.1987 38 1 1.2536 -2.5434 0.7126 39 1 2.8162 -4.5669 1.5650 40 1 2.0602 -4.2324 5.2386 41 1 1.3599 -5.1662 3.8810 42 1 3.3650 -6.1099 6.0047 43 1 1.8507 -6.9090 5.4724 44 1 2.7975 -7.5255 3.3418 45 1 4.2000 -7.7407 4.4358 46 1 4.6651 -5.2785 1.2778 47 1 3.2402 -6.3334 1.4378 48 1 4.7699 -8.1260 2.0323 49 1 5.5577 -6.7479 -0.4512 50 1 4.1331 -7.8028 -0.2904 51 1 5.7785 -8.8103 -2.1720 52 1 8.0961 -12.1911 -4.0611 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715546643.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:32 Heat of formation + Delta-G solvation = -121.329487 kcal Electronic energy + Delta-G solvation = -29799.388886 eV Core-core repulsion = 25605.739475 eV Total energy + Delta-G solvation = -4193.649411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56265 -39.09189 -38.45540 -37.87545 -35.22980 -33.99577 -33.90954 -33.17233 -31.70909 -30.27681 -29.17613 -27.68777 -26.94571 -26.63236 -24.45035 -23.16051 -21.77152 -21.33363 -20.87619 -19.63625 -19.33952 -18.39376 -17.70117 -17.39184 -16.56998 -16.34367 -15.83854 -15.77223 -15.57045 -15.13977 -14.88937 -14.80395 -14.50663 -14.15061 -13.90624 -13.68041 -13.44851 -13.28406 -13.09694 -12.96971 -12.93258 -12.62779 -12.40597 -12.37341 -12.21542 -12.05537 -11.87461 -11.76740 -11.44579 -11.24852 -11.19999 -11.16799 -10.91962 -10.83608 -10.80671 -10.63511 -10.10514 -10.01642 -10.00744 -9.61098 -9.31488 -8.64570 -8.24722 -8.19733 -6.34344 -3.85974 2.33646 2.46928 2.98011 3.03239 3.11591 3.55506 3.69401 3.93193 4.06666 4.30138 4.34370 4.37677 4.51446 4.57133 4.64826 4.68748 4.73557 4.79478 4.82933 5.05504 5.07151 5.15966 5.18514 5.20239 5.24097 5.27224 5.28065 5.34798 5.39376 5.40866 5.49241 5.55728 5.64137 5.73042 5.73511 5.73987 5.78420 5.84309 5.88593 5.93874 6.02592 6.13788 6.28066 6.68560 7.01295 7.18155 7.50154 7.54722 7.94606 8.10954 8.56046 8.91523 9.38702 9.78619 10.78752 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.002293 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.440125 B =12208.677467 C =14775.132277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.357 6.357 5 C 0.042 3.958 6 C 0.513 3.487 7 O -0.519 6.519 8 N -0.726 5.726 9 C 0.149 3.851 10 H 0.094 0.906 11 C -0.134 4.134 12 C -0.123 4.123 13 C -0.122 4.122 14 C -0.097 4.097 15 H 0.096 0.904 16 C 0.061 3.939 17 N -0.665 5.665 18 C 0.047 3.953 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.880 5.880 26 Si 0.881 3.119 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.402 0.598 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.026 0.974 48 H 0.352 0.648 49 H 0.087 0.913 50 H 0.044 0.956 51 H 0.370 0.630 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.698 21.536 6.426 28.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.038 4.038 6 C 0.298 3.702 7 O -0.393 6.393 8 N -0.382 5.382 9 C 0.044 3.956 10 H 0.113 0.887 11 C -0.172 4.172 12 C -0.161 4.161 13 C -0.160 4.160 14 C -0.117 4.117 15 H 0.114 0.886 16 C -0.068 4.068 17 N -0.298 5.298 18 C -0.086 4.086 19 C 0.235 3.765 20 O -0.445 6.445 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.520 5.520 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.239 0.761 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.044 0.956 48 H 0.172 0.828 49 H 0.105 0.895 50 H 0.062 0.938 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.481 21.972 7.776 28.545 hybrid contribution -1.629 -0.266 -2.252 2.792 sum -18.109 21.706 5.524 28.803 Atomic orbital electron populations 1.22317 0.95804 1.02409 1.02849 1.22191 0.93798 0.94120 0.87838 1.21853 1.02041 0.94151 1.02650 1.88068 1.86613 1.17581 1.35303 1.22252 1.01236 0.84344 0.95971 1.20273 0.77902 0.82303 0.89699 1.90730 1.50391 1.60596 1.37594 1.46271 1.68303 1.08106 1.15494 1.21689 0.95152 0.94518 0.84227 0.88750 1.22783 0.97826 0.97694 0.98928 1.22465 0.99948 0.95744 0.97915 1.22478 0.98980 0.97256 0.97272 1.22065 1.00627 0.93498 0.95463 0.88563 1.22046 0.94452 0.94902 0.95439 1.60058 1.55001 1.07996 1.06769 1.21721 0.98395 0.98516 0.89955 1.19691 0.86274 0.86945 0.83629 1.90571 1.52178 1.59714 1.42074 1.42207 1.45695 1.28782 1.06294 1.19434 1.24079 1.04319 0.95576 0.86269 1.25051 0.97200 0.96455 0.97513 1.69622 1.37104 1.23299 1.22020 0.86660 0.79567 0.80059 0.83002 1.19592 1.20187 1.19585 0.91573 0.91436 0.92513 0.91937 0.91796 0.91086 0.91594 0.90155 0.90425 0.76070 0.91125 0.91314 0.91111 0.91315 0.91591 0.90472 0.90707 0.95562 0.82788 0.89501 0.93831 0.79723 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 9.53 37.16 0.35 -0.68 16 2 C 0.08 0.55 3.34 -26.73 -0.09 0.46 16 3 C -0.15 -0.95 9.56 37.15 0.36 -0.59 16 4 O -0.36 -3.65 9.52 -55.14 -0.52 -4.18 16 5 C 0.04 0.33 6.23 36.01 0.22 0.55 16 6 C 0.51 5.41 7.90 -10.98 -0.09 5.32 16 7 O -0.52 -7.79 16.15 -14.35 -0.23 -8.02 16 8 N -0.73 -6.06 4.40 -52.72 -0.23 -6.29 16 9 C 0.15 1.37 3.23 -66.81 -0.22 1.15 16 10 H 0.09 1.03 7.56 -51.93 -0.39 0.63 16 11 C -0.13 -1.13 6.53 -25.07 -0.16 -1.30 16 12 C -0.12 -0.96 6.91 -24.70 -0.17 -1.13 16 13 C -0.12 -1.07 5.53 -25.03 -0.14 -1.20 16 14 C -0.10 -0.90 3.16 -89.50 -0.28 -1.19 16 15 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 16 C 0.06 0.61 3.67 -3.83 -0.01 0.60 16 17 N -0.67 -9.40 6.13 -115.06 -0.70 -10.11 16 18 C 0.05 0.72 6.17 -4.98 -0.03 0.69 16 19 C 0.45 9.87 7.82 -10.99 -0.09 9.79 16 20 O -0.56 -14.83 15.78 5.55 0.09 -14.74 16 21 N -0.59 -13.70 5.09 -10.96 -0.06 -13.76 16 22 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 23 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.45 13.96 55.50 0.77 -24.68 16 26 Si 0.88 18.94 27.74 -169.99 -4.71 14.23 16 27 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 28 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 29 H -0.27 -5.23 6.52 56.52 0.37 -4.87 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.31 7.87 -51.93 -0.41 -0.09 16 33 H 0.06 0.34 7.79 -51.93 -0.40 -0.06 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 38 H 0.08 0.43 7.87 -51.93 -0.41 0.02 16 39 H 0.40 2.54 5.89 -40.82 -0.24 2.30 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.57 7.77 -51.93 -0.40 0.17 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.72 7.46 -51.93 -0.39 0.33 16 47 H 0.03 0.22 7.08 -51.93 -0.37 -0.15 16 48 H 0.35 5.21 7.63 -39.29 -0.30 4.91 16 49 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.37 7.47 5.76 -40.82 -0.24 7.23 16 52 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 416.95 15.07 6.28 6.28 Total: -1.00 -35.37 416.95 -8.93 -44.30 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -9.02 Total: 12.15 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -0.59 Total: 4.81 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.22 Total: -54.83 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.67 Total: -26.93 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.23 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.37 -8.93 -44.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715546643.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.033 kcal (2) G-P(sol) polarization free energy of solvation -35.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds