Wall clock time and date at job start Wed Apr 1 2020 01:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 110.79713 * 2 1 4 4 C 1.55213 * 110.81781 * 123.38905 * 2 1 3 5 5 N 1.48113 * 103.26174 * 155.70558 * 4 2 1 6 6 C 1.34775 * 127.03022 * 140.65739 * 5 4 2 7 7 O 1.21285 * 119.99885 * 180.02562 * 6 5 4 8 8 C 1.50699 * 120.00044 * 0.03820 * 6 5 4 9 9 O 1.42905 * 109.47152 * 180.02562 * 8 6 5 10 10 C 1.42895 * 113.99873 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47509 * 59.99799 * 10 9 8 12 12 C 1.53004 * 109.47251 * 179.97438 * 10 9 8 13 13 C 1.53006 * 109.47323 * 299.99801 * 10 9 8 14 14 C 1.47480 * 105.93641 * 320.68572 * 5 4 2 15 15 C 1.54003 * 107.08274 * 25.44879 * 14 5 4 16 16 H 1.09004 * 110.32454 * 117.68634 * 15 14 5 17 17 N 1.46898 * 110.33060 * 239.79940 * 15 14 5 18 18 C 1.46904 * 111.00201 * 272.16678 * 17 15 14 19 19 C 1.50697 * 109.46892 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00763 * 359.72740 * 19 18 17 21 21 N 1.34784 * 119.99774 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99968 * 179.72830 * 21 19 18 23 23 H 1.08005 * 120.00127 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00107 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99828 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00407 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46887 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47066 * 120.00183 * 26 24 22 29 29 H 1.48499 * 109.47339 * 240.00683 * 26 24 22 30 30 H 1.08999 * 109.47238 * 183.29083 * 1 2 3 31 31 H 1.08996 * 109.47730 * 303.29813 * 1 2 3 32 32 H 1.09007 * 109.47032 * 63.29621 * 1 2 3 33 33 H 1.09004 * 110.67074 * 37.25087 * 4 2 1 34 34 H 1.08995 * 110.77847 * 274.21542 * 4 2 1 35 35 H 1.08999 * 109.47412 * 300.00008 * 8 6 5 36 36 H 1.08993 * 109.47222 * 60.00144 * 8 6 5 37 37 H 1.09001 * 109.47134 * 60.00031 * 11 10 9 38 38 H 1.08994 * 109.47058 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47012 * 299.99886 * 11 10 9 40 40 H 1.08999 * 109.46721 * 59.99328 * 12 10 9 41 41 H 1.08994 * 109.47569 * 179.97438 * 12 10 9 42 42 H 1.09005 * 109.46878 * 300.00237 * 12 10 9 43 43 H 1.08990 * 109.46811 * 59.99503 * 13 10 9 44 44 H 1.08996 * 109.46953 * 180.02562 * 13 10 9 45 45 H 1.09005 * 109.46201 * 300.00165 * 13 10 9 46 46 H 1.09007 * 109.91736 * 266.08825 * 14 5 4 47 47 H 1.09000 * 109.91219 * 144.80710 * 14 5 4 48 48 H 1.00898 * 111.00447 * 148.20882 * 17 15 14 49 49 H 1.09001 * 109.46900 * 60.00109 * 18 17 15 50 50 H 1.08993 * 109.47169 * 299.99830 * 18 17 15 51 51 H 0.97005 * 119.99846 * 359.72750 * 21 19 18 52 52 H 0.96990 * 120.00373 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0191 0.0000 4 6 2.0816 -0.7984 1.2114 5 7 3.4305 -1.2114 0.7602 6 6 4.5573 -1.2489 1.4988 7 8 5.6002 -1.6101 0.9960 8 6 4.5213 -0.8421 2.9494 9 8 5.8292 -0.9661 3.5115 10 6 5.9055 -0.6033 4.8915 11 6 4.9760 -1.5037 5.7078 12 6 7.3436 -0.7745 5.3852 13 6 5.4785 0.8563 5.0596 14 6 3.2887 -1.5727 -0.6626 15 6 2.0776 -0.7937 -1.2086 16 1 2.3911 -0.1115 -1.9989 17 7 1.0580 -1.7232 -1.7129 18 6 1.3044 -2.0616 -3.1210 19 6 0.2412 -3.0152 -3.6019 20 8 -0.6327 -3.3813 -2.8447 21 7 0.2643 -3.4652 -4.8722 22 6 -0.6997 -4.3371 -5.3081 23 1 -1.4774 -4.6637 -4.6335 24 6 -0.6763 -4.8007 -6.6178 25 7 0.2702 -4.4037 -7.4385 26 14 -1.9893 -5.9892 -7.2116 27 1 -2.9331 -6.2787 -6.1023 28 1 -2.7306 -5.3815 -8.3458 29 1 -1.3483 -7.2519 -7.6589 30 1 -0.3634 -1.0259 0.0590 31 1 -0.3634 0.5641 0.8589 32 1 -0.3633 0.4618 -0.9181 33 1 1.4595 -1.6706 1.4128 34 1 2.1490 -0.1634 2.0946 35 1 4.1889 0.1930 3.0284 36 1 3.8300 -1.4879 3.4908 37 1 5.2802 -2.5436 5.5882 38 1 5.0346 -1.2272 6.7605 39 1 3.9515 -1.3821 5.3563 40 1 8.0060 -0.1334 4.8037 41 1 7.4019 -0.4973 6.4377 42 1 7.6474 -1.8145 5.2655 43 1 4.4541 0.9779 4.7080 44 1 5.5371 1.1331 6.1121 45 1 6.1408 1.4977 4.4780 46 1 3.1144 -2.6445 -0.7580 47 1 4.1887 -1.2902 -1.2088 48 1 0.1308 -1.3452 -1.5887 49 1 2.2833 -2.5315 -3.2158 50 1 1.2775 -1.1534 -3.7230 51 1 0.9630 -3.1722 -5.4779 52 1 0.2865 -4.7270 -8.3528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717277595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:15 Heat of formation + Delta-G solvation = -107.642800 kcal Electronic energy + Delta-G solvation = -30125.704777 eV Core-core repulsion = 25932.648866 eV Total energy + Delta-G solvation = -4193.055912 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45872 -39.38477 -38.36444 -37.70377 -34.73307 -33.83240 -33.77760 -32.33530 -31.20689 -29.96883 -28.27430 -27.85716 -27.30426 -26.49817 -25.97129 -24.04293 -22.83431 -20.51793 -19.77604 -19.44417 -19.25046 -17.94493 -17.57331 -16.64863 -16.57295 -16.18399 -16.09326 -15.55033 -15.42861 -14.98748 -14.58089 -14.39663 -14.23913 -13.99334 -13.84525 -13.66937 -13.50981 -13.41480 -12.96253 -12.64346 -12.52473 -12.45812 -12.36205 -12.22649 -12.15324 -12.10960 -11.95735 -11.72363 -11.65650 -11.55323 -11.29302 -11.10245 -11.02264 -10.91580 -10.81555 -10.34983 -10.23187 -9.96457 -9.85394 -9.52950 -8.81764 -8.48638 -8.14723 -7.97233 -6.42478 -3.83380 2.44254 2.47993 3.15882 3.26622 3.33587 3.51725 3.89086 4.05758 4.18018 4.24683 4.30665 4.39583 4.41481 4.57267 4.60586 4.70498 4.78938 4.86785 5.06025 5.09429 5.13002 5.14406 5.18313 5.23541 5.27981 5.29232 5.30548 5.39402 5.42436 5.43375 5.56995 5.60016 5.63208 5.70958 5.77190 5.82687 5.85436 5.89683 5.91408 6.00763 6.04204 6.18153 6.26650 6.81402 7.15157 7.37048 7.54667 7.60844 8.04297 8.05392 8.59930 9.16935 9.53316 10.04222 10.75247 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.001805 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.498252 B =15511.188409 C =15925.952470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 H 0.085 0.915 4 C 0.106 3.894 5 N -0.619 5.619 6 C 0.532 3.468 7 O -0.521 6.521 8 C 0.046 3.954 9 O -0.351 6.351 10 C 0.104 3.896 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.180 4.180 14 C 0.116 3.884 15 C 0.074 3.926 16 H 0.061 0.939 17 N -0.663 5.663 18 C 0.047 3.953 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.357 0.643 49 H 0.086 0.914 50 H 0.045 0.955 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.073 13.852 23.729 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.124 4.124 3 H 0.103 0.897 4 C -0.017 4.017 5 N -0.356 5.356 6 C 0.319 3.681 7 O -0.396 6.396 8 C -0.034 4.034 9 O -0.270 6.270 10 C 0.065 3.935 11 C -0.238 4.238 12 C -0.194 4.194 13 C -0.237 4.237 14 C -0.007 4.007 15 C -0.037 4.037 16 H 0.078 0.922 17 N -0.301 5.301 18 C -0.085 4.085 19 C 0.226 3.774 20 O -0.469 6.469 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.182 0.818 49 H 0.104 0.896 50 H 0.063 0.937 51 H 0.226 0.774 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.654 12.721 23.964 28.479 hybrid contribution -0.736 0.501 -1.163 1.464 sum 7.918 13.222 22.802 27.522 Atomic orbital electron populations 1.21777 0.93425 1.03708 1.02216 1.22442 0.96777 0.98798 0.94388 0.89704 1.22722 0.83031 0.99027 0.96943 1.48648 1.08076 1.66754 1.12084 1.19822 0.82373 0.78432 0.87443 1.90744 1.29744 1.46404 1.72715 1.22161 0.87680 1.01630 0.91945 1.88107 1.26739 1.88127 1.23993 1.21607 0.96963 0.93483 0.81472 1.22463 0.99777 1.00930 1.00648 1.21743 0.93696 1.03302 1.00676 1.22457 1.01958 0.96470 1.02857 1.22190 0.97517 1.00900 0.80062 1.22380 0.92738 0.92422 0.96144 0.92152 1.60293 1.06299 1.45357 1.18151 1.21760 0.99913 0.98276 0.88582 1.19773 0.88149 0.86172 0.83279 1.90516 1.39428 1.61907 1.55013 1.41875 1.27293 1.41061 1.09716 1.19752 1.06682 1.20660 0.95796 0.87842 1.25273 0.98139 0.98680 0.95887 1.69617 1.33038 1.44915 1.06629 0.85797 0.80245 0.79587 0.78693 1.19222 1.20784 1.20734 0.90142 0.91983 0.91966 0.89715 0.90614 0.90291 0.90136 0.91407 0.91252 0.92159 0.91625 0.91004 0.91562 0.92213 0.91245 0.91494 0.89752 0.90712 0.81768 0.89557 0.93699 0.77437 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 7.92 37.16 0.29 -1.02 16 2 C -0.10 -0.93 3.65 -88.60 -0.32 -1.25 16 3 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 4 C 0.11 0.92 6.41 -1.98 -0.01 0.91 16 5 N -0.62 -7.30 3.29 -169.60 -0.56 -7.86 16 6 C 0.53 7.12 7.97 -10.99 -0.09 7.03 16 7 O -0.52 -9.38 16.84 -14.36 -0.24 -9.63 16 8 C 0.05 0.44 4.54 36.01 0.16 0.60 16 9 O -0.35 -4.02 9.52 -55.14 -0.52 -4.55 16 10 C 0.10 0.80 1.14 -90.61 -0.10 0.70 16 11 C -0.18 -1.13 8.25 37.16 0.31 -0.82 16 12 C -0.14 -0.94 8.84 37.16 0.33 -0.61 16 13 C -0.18 -1.06 8.25 37.16 0.31 -0.76 16 14 C 0.12 1.51 6.72 -2.98 -0.02 1.49 16 15 C 0.07 0.87 3.24 -66.34 -0.21 0.65 16 16 H 0.06 0.67 7.84 -51.93 -0.41 0.27 16 17 N -0.66 -9.90 5.57 -106.54 -0.59 -10.49 16 18 C 0.05 0.81 6.01 -4.98 -0.03 0.78 16 19 C 0.44 10.19 7.82 -10.98 -0.09 10.11 16 20 O -0.58 -15.45 15.78 5.55 0.09 -15.37 16 21 N -0.56 -14.15 5.29 -10.96 -0.06 -14.20 16 22 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 23 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 26 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.08 0.83 6.90 -51.93 -0.36 0.48 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 33 H 0.08 0.78 8.03 -51.93 -0.42 0.37 16 34 H 0.08 0.45 7.23 -51.93 -0.38 0.07 16 35 H 0.08 0.57 6.18 -51.93 -0.32 0.25 16 36 H 0.08 0.63 6.42 -51.93 -0.33 0.30 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.34 6.54 -51.93 -0.34 0.00 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.31 6.54 -51.93 -0.34 -0.03 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 47 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 48 H 0.36 5.34 5.11 -39.29 -0.20 5.14 16 49 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 50 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 51 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 52 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 413.57 15.07 6.23 6.23 Total: -1.00 -34.50 413.57 -8.48 -42.98 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -8.81 Total: 10.82 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 0.28 Total: 9.85 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.48 Total: -56.33 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.68 Total: -29.54 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.50 -8.48 -42.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717277595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.658 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds