Wall clock time and date at job start Wed Apr 1 2020 01:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 110.79713 * 2 1 4 4 C 1.55213 * 110.81781 * 123.38905 * 2 1 3 5 5 N 1.48113 * 103.26174 * 155.70558 * 4 2 1 6 6 C 1.34775 * 127.03022 * 140.65739 * 5 4 2 7 7 O 1.21285 * 119.99885 * 180.02562 * 6 5 4 8 8 C 1.50699 * 120.00044 * 0.03820 * 6 5 4 9 9 O 1.42905 * 109.47152 * 180.02562 * 8 6 5 10 10 C 1.42895 * 113.99873 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47509 * 59.99799 * 10 9 8 12 12 C 1.53004 * 109.47251 * 179.97438 * 10 9 8 13 13 C 1.53006 * 109.47323 * 299.99801 * 10 9 8 14 14 C 1.47480 * 105.93641 * 320.68572 * 5 4 2 15 15 C 1.54003 * 107.08274 * 25.44879 * 14 5 4 16 16 H 1.09004 * 110.32454 * 117.68634 * 15 14 5 17 17 N 1.46898 * 110.33060 * 239.79940 * 15 14 5 18 18 C 1.46904 * 111.00201 * 272.16678 * 17 15 14 19 19 C 1.50697 * 109.46892 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00763 * 359.72740 * 19 18 17 21 21 N 1.34784 * 119.99774 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99968 * 179.72830 * 21 19 18 23 23 H 1.08005 * 120.00127 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00107 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99828 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00407 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46887 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47066 * 120.00183 * 26 24 22 29 29 H 1.48499 * 109.47339 * 240.00683 * 26 24 22 30 30 H 1.08999 * 109.47238 * 183.29083 * 1 2 3 31 31 H 1.08996 * 109.47730 * 303.29813 * 1 2 3 32 32 H 1.09007 * 109.47032 * 63.29621 * 1 2 3 33 33 H 1.09004 * 110.67074 * 37.25087 * 4 2 1 34 34 H 1.08995 * 110.77847 * 274.21542 * 4 2 1 35 35 H 1.08999 * 109.47412 * 300.00008 * 8 6 5 36 36 H 1.08993 * 109.47222 * 60.00144 * 8 6 5 37 37 H 1.09001 * 109.47134 * 60.00031 * 11 10 9 38 38 H 1.08994 * 109.47058 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47012 * 299.99886 * 11 10 9 40 40 H 1.08999 * 109.46721 * 59.99328 * 12 10 9 41 41 H 1.08994 * 109.47569 * 179.97438 * 12 10 9 42 42 H 1.09005 * 109.46878 * 300.00237 * 12 10 9 43 43 H 1.08990 * 109.46811 * 59.99503 * 13 10 9 44 44 H 1.08996 * 109.46953 * 180.02562 * 13 10 9 45 45 H 1.09005 * 109.46201 * 300.00165 * 13 10 9 46 46 H 1.09007 * 109.91736 * 266.08825 * 14 5 4 47 47 H 1.09000 * 109.91219 * 144.80710 * 14 5 4 48 48 H 1.00898 * 111.00447 * 148.20882 * 17 15 14 49 49 H 1.09001 * 109.46900 * 60.00109 * 18 17 15 50 50 H 1.08993 * 109.47169 * 299.99830 * 18 17 15 51 51 H 0.97005 * 119.99846 * 359.72750 * 21 19 18 52 52 H 0.96990 * 120.00373 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0191 0.0000 4 6 2.0816 -0.7984 1.2114 5 7 3.4305 -1.2114 0.7602 6 6 4.5573 -1.2489 1.4988 7 8 5.6002 -1.6101 0.9960 8 6 4.5213 -0.8421 2.9494 9 8 5.8292 -0.9661 3.5115 10 6 5.9055 -0.6033 4.8915 11 6 4.9760 -1.5037 5.7078 12 6 7.3436 -0.7745 5.3852 13 6 5.4785 0.8563 5.0596 14 6 3.2887 -1.5727 -0.6626 15 6 2.0776 -0.7937 -1.2086 16 1 2.3911 -0.1115 -1.9989 17 7 1.0580 -1.7232 -1.7129 18 6 1.3044 -2.0616 -3.1210 19 6 0.2412 -3.0152 -3.6019 20 8 -0.6327 -3.3813 -2.8447 21 7 0.2643 -3.4652 -4.8722 22 6 -0.6997 -4.3371 -5.3081 23 1 -1.4774 -4.6637 -4.6335 24 6 -0.6763 -4.8007 -6.6178 25 7 0.2702 -4.4037 -7.4385 26 14 -1.9893 -5.9892 -7.2116 27 1 -2.9331 -6.2787 -6.1023 28 1 -2.7306 -5.3815 -8.3458 29 1 -1.3483 -7.2519 -7.6589 30 1 -0.3634 -1.0259 0.0590 31 1 -0.3634 0.5641 0.8589 32 1 -0.3633 0.4618 -0.9181 33 1 1.4595 -1.6706 1.4128 34 1 2.1490 -0.1634 2.0946 35 1 4.1889 0.1930 3.0284 36 1 3.8300 -1.4879 3.4908 37 1 5.2802 -2.5436 5.5882 38 1 5.0346 -1.2272 6.7605 39 1 3.9515 -1.3821 5.3563 40 1 8.0060 -0.1334 4.8037 41 1 7.4019 -0.4973 6.4377 42 1 7.6474 -1.8145 5.2655 43 1 4.4541 0.9779 4.7080 44 1 5.5371 1.1331 6.1121 45 1 6.1408 1.4977 4.4780 46 1 3.1144 -2.6445 -0.7580 47 1 4.1887 -1.2902 -1.2088 48 1 0.1308 -1.3452 -1.5887 49 1 2.2833 -2.5315 -3.2158 50 1 1.2775 -1.1534 -3.7230 51 1 0.9630 -3.1722 -5.4779 52 1 0.2865 -4.7270 -8.3528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717277595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:14 Heat of formation + Delta-G solvation = -132.342922 kcal Electronic energy + Delta-G solvation = -30126.775855 eV Core-core repulsion = 25932.648866 eV Total energy + Delta-G solvation = -4194.126989 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.39384 -40.32840 -39.82879 -38.87750 -36.18516 -35.56290 -34.40596 -33.42030 -33.10464 -30.93820 -29.12784 -28.28363 -28.21492 -27.33777 -27.23192 -25.70993 -23.76641 -21.24598 -21.06094 -20.52895 -20.37487 -19.91971 -18.45835 -17.81124 -17.45470 -17.23319 -17.08149 -16.85551 -16.57498 -16.31702 -15.85029 -15.61353 -15.43806 -15.11479 -14.98134 -14.52712 -14.46779 -14.22515 -14.04405 -13.93465 -13.52177 -13.48051 -13.17603 -13.09367 -13.03689 -12.88038 -12.83531 -12.81125 -12.74043 -12.65149 -12.40626 -12.22779 -12.18439 -12.11304 -11.77138 -11.66765 -11.57637 -11.51429 -10.86937 -10.59848 -10.33869 -10.01897 -9.81216 -9.38763 -8.47072 -5.95818 1.36411 1.41750 1.48175 1.55922 1.59699 2.04509 2.28612 2.80490 2.93007 3.20394 3.36121 3.47773 3.51896 3.77669 3.89549 3.94580 3.96994 4.07336 4.12046 4.21705 4.27731 4.30681 4.39688 4.47604 4.53288 4.57012 4.60411 4.67134 4.67802 4.73697 4.79993 4.80725 4.82148 4.90631 4.95148 4.95378 5.05614 5.11534 5.17616 5.19948 5.33886 5.37915 5.40978 5.47153 5.87452 6.08153 6.19166 6.40209 6.50698 6.59207 7.05518 7.12113 7.55828 8.10380 8.70555 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.001805 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.498252 B =15511.188409 C =15925.952470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.108 0.892 4 C 0.103 3.897 5 N -0.616 5.616 6 C 0.523 3.477 7 O -0.581 6.581 8 C 0.052 3.948 9 O -0.388 6.388 10 C 0.094 3.906 11 C -0.179 4.179 12 C -0.139 4.139 13 C -0.177 4.177 14 C 0.115 3.885 15 C 0.077 3.923 16 H 0.073 0.927 17 N -0.674 5.674 18 C 0.061 3.939 19 C 0.439 3.561 20 O -0.620 6.620 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.081 0.919 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.273 1.273 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.358 0.642 49 H 0.095 0.905 50 H 0.070 0.930 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.155 15.743 25.421 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 H 0.127 0.873 4 C -0.018 4.018 5 N -0.350 5.350 6 C 0.313 3.687 7 O -0.460 6.460 8 C -0.027 4.027 9 O -0.308 6.308 10 C 0.056 3.944 11 C -0.236 4.236 12 C -0.196 4.196 13 C -0.234 4.234 14 C -0.009 4.009 15 C -0.034 4.034 16 H 0.090 0.910 17 N -0.312 5.312 18 C -0.071 4.071 19 C 0.227 3.773 20 O -0.507 6.507 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.818 3.182 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.198 1.198 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.183 0.817 49 H 0.113 0.887 50 H 0.088 0.912 51 H 0.229 0.771 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.719 14.642 25.670 30.544 hybrid contribution -0.419 -0.086 -1.629 1.685 sum 7.300 14.557 24.041 29.037 Atomic orbital electron populations 1.21728 0.92959 1.02712 1.03303 1.22476 0.96988 0.99378 0.92556 0.87343 1.22956 0.80931 0.99547 0.98374 1.48735 1.09086 1.65779 1.11440 1.20657 0.81716 0.77347 0.88967 1.90709 1.31977 1.49218 1.74114 1.22225 0.87693 1.03641 0.89121 1.88075 1.27846 1.88746 1.26120 1.21881 0.97543 0.95025 0.79962 1.22452 0.99780 0.99747 1.01612 1.21803 0.93505 1.02259 1.02041 1.22433 1.02249 0.94709 1.03997 1.22071 0.97811 0.99589 0.81415 1.22404 0.91369 0.91958 0.97653 0.90959 1.60227 1.07211 1.47108 1.16682 1.21602 0.97625 0.97656 0.90231 1.20812 0.88516 0.85785 0.82201 1.90483 1.41245 1.63180 1.55751 1.41955 1.27180 1.41350 1.10646 1.19718 1.07532 1.22610 0.96343 0.90144 1.26062 1.00062 0.99819 0.95480 1.69680 1.34025 1.45499 1.07008 0.84856 0.77656 0.77649 0.78086 1.19653 1.19519 1.19849 0.92346 0.89264 0.92303 0.90275 0.86607 0.87209 0.88022 0.92868 0.89324 0.91213 0.92640 0.88529 0.92924 0.91061 0.89400 0.92470 0.92444 0.91764 0.81668 0.88695 0.91182 0.77059 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 7.92 71.98 0.57 -1.59 16 2 C -0.09 -1.40 3.65 -9.49 -0.03 -1.43 16 3 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 4 C 0.10 1.50 6.41 86.83 0.56 2.06 16 5 N -0.62 -13.88 3.29 -808.87 -2.66 -16.54 16 6 C 0.52 13.81 7.97 87.66 0.70 14.51 16 7 O -0.58 -21.74 16.84 15.99 0.27 -21.47 16 8 C 0.05 0.90 4.54 71.24 0.32 1.23 16 9 O -0.39 -8.64 9.52 -129.94 -1.24 -9.87 16 10 C 0.09 1.30 1.14 -10.79 -0.01 1.28 16 11 C -0.18 -1.83 8.25 71.98 0.59 -1.24 16 12 C -0.14 -1.81 8.84 71.98 0.64 -1.18 16 13 C -0.18 -1.59 8.25 71.98 0.59 -0.99 16 14 C 0.11 3.01 6.72 86.53 0.58 3.59 16 15 C 0.08 1.69 3.24 45.80 0.15 1.84 16 16 H 0.07 1.46 7.84 -2.38 -0.02 1.44 16 17 N -0.67 -19.76 5.57 -491.00 -2.73 -22.49 16 18 C 0.06 2.07 6.01 85.56 0.51 2.58 16 19 C 0.44 20.68 7.82 87.65 0.69 21.36 16 20 O -0.62 -33.65 15.78 -3.06 -0.05 -33.70 16 21 N -0.57 -29.50 5.29 -306.97 -1.62 -31.13 16 22 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 23 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 25 N -0.92 -50.08 13.05 21.66 0.28 -49.80 16 26 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 30 H 0.06 1.13 6.90 -2.39 -0.02 1.11 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.91 7.82 -2.38 -0.02 0.89 16 33 H 0.08 1.29 8.03 -2.38 -0.02 1.27 16 34 H 0.12 0.80 7.23 -2.39 -0.02 0.78 16 35 H 0.11 1.19 6.18 -2.39 -0.01 1.17 16 36 H 0.10 1.31 6.42 -2.39 -0.02 1.29 16 37 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.54 16 39 H 0.07 0.57 6.54 -2.39 -0.02 0.55 16 40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.07 0.47 6.54 -2.39 -0.02 0.45 16 44 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 46 H 0.06 1.81 7.93 -2.38 -0.02 1.79 16 47 H 0.06 1.79 8.05 -2.39 -0.02 1.77 16 48 H 0.36 10.48 5.11 -89.70 -0.46 10.02 16 49 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 50 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 51 H 0.40 19.44 7.90 -92.70 -0.73 18.70 16 52 H 0.28 14.08 8.31 -92.72 -0.77 13.31 16 Total: -1.00 -78.73 413.57 1.15 -77.58 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -0.26 Total: 38.69 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 7.14 Total: 23.61 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -6.73 Total: -119.95 kcal Atomic # 8 Polarization: -64.02 SS G_CDS: -1.02 Total: -65.04 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -78.73 1.15 -77.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717277595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.765 kcal (2) G-P(sol) polarization free energy of solvation -78.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds