Wall clock time and date at job start Wed Apr 1 2020 01:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46505 * 2 1 4 4 C 1.53000 * 109.47256 * 240.00340 * 2 1 3 5 5 C 1.52996 * 109.46897 * 174.99840 * 4 2 1 6 6 C 1.53004 * 109.46700 * 179.97438 * 5 4 2 7 7 N 1.46901 * 109.46916 * 179.97438 * 6 5 4 8 8 C 1.46905 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47066 * 180.02562 * 8 7 6 10 10 O 1.21297 * 120.00124 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00196 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00290 * 180.02562 * 11 9 8 13 13 H 1.07990 * 119.99768 * 359.97438 * 12 11 9 14 14 C 1.38956 * 119.99812 * 180.02562 * 12 11 9 15 15 N 1.31408 * 119.99864 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99403 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47056 * 90.00522 * 16 14 12 18 18 H 1.48505 * 109.46897 * 209.99554 * 16 14 12 19 19 H 1.48495 * 109.47527 * 330.00091 * 16 14 12 20 20 N 1.46499 * 109.47285 * 119.99828 * 2 1 3 21 21 C 1.34773 * 120.00168 * 275.00555 * 20 2 1 22 22 O 1.21277 * 120.00411 * 359.97438 * 21 20 2 23 23 C 1.50705 * 120.00110 * 180.02562 * 21 20 2 24 24 C 1.52996 * 110.45594 * 57.38935 * 23 21 20 25 25 C 1.54505 * 110.51288 * 179.97438 * 23 21 20 26 26 C 1.54480 * 104.06514 * 118.64425 * 25 23 21 27 27 O 1.44421 * 104.80034 * 23.97771 * 26 25 23 28 28 C 1.44424 * 105.27818 * 319.48776 * 27 26 25 29 29 H 1.08996 * 109.47045 * 299.99439 * 1 2 3 30 30 H 1.08999 * 109.47450 * 59.99879 * 1 2 3 31 31 H 1.08998 * 109.47029 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47020 * 54.99285 * 4 2 1 33 33 H 1.09005 * 109.46779 * 295.00045 * 4 2 1 34 34 H 1.08995 * 109.47485 * 60.00352 * 5 4 2 35 35 H 1.08996 * 109.47010 * 299.99144 * 5 4 2 36 36 H 1.09004 * 109.46889 * 60.00145 * 6 5 4 37 37 H 1.08995 * 109.47384 * 299.99786 * 6 5 4 38 38 H 1.00901 * 111.00067 * 303.95263 * 7 6 5 39 39 H 1.09001 * 109.46798 * 300.00327 * 8 7 6 40 40 H 1.08998 * 109.46961 * 60.00043 * 8 7 6 41 41 H 0.97009 * 119.99629 * 359.97438 * 11 9 8 42 42 H 0.97004 * 119.99642 * 179.97438 * 15 14 12 43 43 H 0.97001 * 119.99732 * 95.00347 * 20 2 1 44 44 H 1.09000 * 109.47587 * 60.70447 * 24 23 21 45 45 H 1.09000 * 109.47287 * 180.70105 * 24 23 21 46 46 H 1.08995 * 109.47655 * 300.70271 * 24 23 21 47 47 H 1.09004 * 110.51049 * 237.28906 * 25 23 21 48 48 H 1.09000 * 110.50933 * 359.97438 * 25 23 21 49 49 H 1.08994 * 110.37103 * 142.81056 * 26 25 23 50 50 H 1.08999 * 110.36624 * 265.03698 * 26 25 23 51 51 H 1.09005 * 110.37242 * 281.68760 * 28 27 26 52 52 H 1.08999 * 110.37570 * 159.34724 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3136 6 6 4.0749 -1.3349 -2.5626 7 7 5.5389 -1.2306 -2.6248 8 6 6.0652 -1.9133 -3.8143 9 6 7.5665 -1.7859 -3.8436 10 8 8.1416 -1.1858 -2.9601 11 7 8.2703 -2.3387 -4.8513 12 6 9.6361 -2.2232 -4.8777 13 1 10.1481 -1.6889 -4.0911 14 6 10.3616 -2.7927 -5.9170 15 7 9.7385 -3.4424 -6.8743 16 14 12.2225 -2.6346 -5.9531 17 1 12.8308 -3.7811 -5.2313 18 1 12.6917 -2.6318 -7.3621 19 1 12.6245 -1.3657 -5.2949 20 7 2.0184 -0.6906 1.1962 21 6 2.1470 -0.0182 2.3571 22 8 1.8590 1.1585 2.4116 23 6 2.6500 -0.7285 3.5875 24 6 4.0260 -1.3435 3.3249 25 6 2.7119 0.2438 4.7866 26 6 1.7372 -0.3682 5.8170 27 8 1.6754 -1.7709 5.4785 28 6 1.6451 -1.8130 4.0352 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2617 -2.1369 33 1 1.7517 -1.7715 -1.2056 34 1 3.9995 -1.0727 -0.4260 35 1 3.8531 0.4371 -1.3574 36 1 3.6403 -0.8757 -3.4505 37 1 3.7866 -2.3851 -2.5186 38 1 5.8340 -0.2660 -2.6017 39 1 5.7910 -2.9677 -3.7792 40 1 5.6440 -1.4581 -4.7107 41 1 7.8104 -2.8189 -5.5577 42 1 10.2449 -3.8396 -7.6001 43 1 2.2491 -1.6317 1.1526 44 1 4.7338 -0.5550 3.0693 45 1 4.3686 -1.8630 4.2198 46 1 3.9563 -2.0509 2.4985 47 1 3.7223 0.2842 5.1938 48 1 2.3792 1.2383 4.4895 49 1 2.1231 -0.2385 6.8280 50 1 0.7522 0.0896 5.7259 51 1 0.6454 -1.5781 3.6695 52 1 1.9602 -2.7932 3.6774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717690111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:56 Heat of formation + Delta-G solvation = -164.624140 kcal Electronic energy + Delta-G solvation = -29610.531734 eV Core-core repulsion = 25415.004926 eV Total energy + Delta-G solvation = -4195.526808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.77310 -40.16690 -39.70971 -37.98733 -36.66257 -35.85382 -34.81081 -33.42092 -33.14634 -31.48437 -30.48297 -28.64836 -27.57087 -26.67594 -25.07510 -24.23810 -23.58851 -22.37269 -21.71499 -21.04158 -20.60232 -19.90337 -18.48862 -17.82101 -17.57528 -17.13134 -16.92947 -16.49872 -16.36558 -16.18948 -15.98700 -15.79533 -15.61286 -15.25532 -15.04918 -14.74994 -14.48549 -14.26314 -14.16164 -14.01459 -13.63647 -13.49712 -13.30005 -13.23428 -13.07349 -13.06109 -12.96345 -12.75899 -12.42935 -12.32584 -12.28112 -12.14511 -12.08843 -12.02597 -11.80694 -11.73548 -11.54294 -11.50598 -10.80941 -10.76120 -10.35670 -10.10940 -10.02270 -9.30796 -8.47353 -5.96119 1.37772 1.41704 1.53945 1.54368 2.04571 2.12387 2.28946 2.92752 2.95305 3.19906 3.29078 3.50559 3.66101 3.76087 3.79045 3.96634 4.06658 4.14258 4.18082 4.19140 4.30391 4.32888 4.44329 4.52911 4.54636 4.58123 4.64577 4.65654 4.71069 4.71890 4.78888 4.83186 4.83865 4.88759 4.93654 4.95981 5.04522 5.07423 5.21055 5.26362 5.30598 5.40114 5.42089 5.57109 5.70667 5.90666 6.13190 6.40272 6.51050 6.59648 7.12012 7.19589 7.55591 8.11102 8.69939 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.001719 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.646738 B =16287.356743 C =17433.618712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.063 0.937 4 C -0.113 4.113 5 C -0.111 4.111 6 C 0.061 3.939 7 N -0.687 5.687 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.625 6.625 11 N -0.573 5.573 12 C -0.335 4.335 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.274 1.274 20 N -0.707 5.707 21 C 0.527 3.473 22 O -0.578 6.578 23 C -0.114 4.114 24 C -0.134 4.134 25 C -0.146 4.146 26 C 0.045 3.955 27 O -0.386 6.386 28 C 0.062 3.938 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.340 0.660 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.413 0.587 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.061 0.939 51 H 0.063 0.937 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.787 1.343 16.344 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.082 0.918 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.068 4.068 7 N -0.319 5.319 8 C -0.067 4.067 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.465 4.465 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.199 1.199 20 N -0.359 5.359 21 C 0.314 3.686 22 O -0.457 6.457 23 C -0.117 4.117 24 C -0.191 4.191 25 C -0.184 4.184 26 C -0.032 4.032 27 O -0.305 6.305 28 C -0.015 4.015 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.158 0.842 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.250 0.750 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.101 0.899 49 H 0.128 0.872 50 H 0.079 0.921 51 H 0.081 0.919 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.451 1.747 17.317 28.407 hybrid contribution 0.754 0.506 -1.375 1.648 sum -21.697 2.253 15.942 27.018 Atomic orbital electron populations 1.22112 0.94254 1.03001 1.02129 1.21004 0.94501 0.96662 0.84168 0.91844 1.21790 0.94112 1.02378 0.96815 1.21490 0.95760 0.99854 0.97803 1.22086 0.85417 1.01713 0.97547 1.60115 1.11028 1.20818 1.39974 1.21533 0.90106 1.01810 0.93241 1.20958 0.90765 0.83029 0.82943 1.90491 1.72879 1.47725 1.40100 1.41940 1.06875 1.49134 1.23063 1.19662 0.83101 1.34454 1.09249 0.90420 1.26041 1.04926 0.95690 0.94614 1.69668 1.38269 1.35778 1.12277 0.84928 0.76846 0.78710 0.77851 1.19598 1.19468 1.19873 1.46032 1.66273 1.14621 1.08984 1.20516 0.76370 0.86624 0.85131 1.90660 1.51961 1.17740 1.85370 1.22182 0.98960 0.97135 0.93432 1.21843 0.92623 1.00945 1.03694 1.23045 1.01869 0.99717 0.93788 1.23532 0.98773 0.80842 1.00016 1.89121 1.95245 1.25058 1.21033 1.23535 0.97243 0.99393 0.81318 0.94248 0.90430 0.90804 0.89045 0.89039 0.91659 0.93327 0.94364 0.89826 0.84163 0.87615 0.91696 0.76914 0.91269 0.75010 0.92733 0.90146 0.90303 0.89267 0.89913 0.87219 0.92058 0.91889 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.48 71.98 0.68 -1.21 16 2 C 0.14 1.97 2.57 44.99 0.12 2.09 16 3 H 0.06 1.25 7.58 -2.39 -0.02 1.23 16 4 C -0.11 -1.22 4.75 30.59 0.15 -1.08 16 5 C -0.11 -1.89 5.36 30.59 0.16 -1.73 16 6 C 0.06 1.22 5.69 86.30 0.49 1.71 16 7 N -0.69 -20.89 6.13 -517.92 -3.17 -24.06 16 8 C 0.07 2.18 6.17 85.55 0.53 2.71 16 9 C 0.44 20.71 7.82 87.66 0.69 21.39 16 10 O -0.63 -34.94 15.78 -3.08 -0.05 -34.98 16 11 N -0.57 -29.35 5.29 -306.99 -1.62 -30.97 16 12 C -0.34 -19.08 9.68 84.04 0.81 -18.26 16 13 H 0.08 4.73 7.16 -2.92 -0.02 4.71 16 14 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 15 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 16 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 N -0.71 -9.59 4.42 -442.54 -1.95 -11.54 16 21 C 0.53 9.93 6.37 87.66 0.56 10.49 16 22 O -0.58 -15.63 14.94 -3.02 -0.05 -15.68 16 23 C -0.11 -1.70 0.89 -51.91 -0.05 -1.75 16 24 C -0.13 -1.78 8.18 71.98 0.59 -1.19 16 25 C -0.15 -2.35 6.32 31.61 0.20 -2.15 16 26 C 0.04 0.64 7.63 72.49 0.55 1.19 16 27 O -0.39 -6.51 11.65 -148.98 -1.74 -8.25 16 28 C 0.06 0.79 6.72 72.49 0.49 1.28 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.06 1.22 7.75 -2.39 -0.02 1.20 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.34 11.23 8.43 -89.69 -0.76 10.48 16 39 H 0.11 3.12 8.14 -2.39 -0.02 3.11 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.40 19.17 7.90 -92.70 -0.73 18.44 16 42 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.41 3.59 7.93 -92.71 -0.73 2.85 16 44 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.08 0.81 7.49 -2.39 -0.02 0.80 16 47 H 0.09 1.28 7.73 -2.39 -0.02 1.27 16 48 H 0.08 1.66 6.50 -2.39 -0.02 1.64 16 49 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.06 0.79 7.86 -2.38 -0.02 0.78 16 52 H 0.12 1.01 7.88 -2.39 -0.02 1.00 16 Total: -1.00 -74.38 421.76 -1.13 -75.51 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: -1.29 Total: 40.84 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.43 Total: 13.28 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -6.47 Total: -115.58 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -1.83 Total: -58.91 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -74.38 -1.13 -75.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717690111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.118 kcal (2) G-P(sol) polarization free energy of solvation -74.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds