Wall clock time and date at job start Wed Apr 1 2020 01:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47130 * 2 1 4 4 C 1.52998 * 109.46917 * 119.99769 * 2 1 3 5 5 C 1.53004 * 109.47083 * 185.00061 * 4 2 1 6 6 C 1.52998 * 109.47083 * 179.97438 * 5 4 2 7 7 N 1.46901 * 109.46748 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99963 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47330 * 180.02562 * 8 7 6 10 10 O 1.21290 * 120.00204 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00322 * 180.02562 * 9 8 7 12 12 C 1.37092 * 120.00400 * 179.97438 * 11 9 8 13 13 H 1.08006 * 119.99845 * 0.02562 * 12 11 9 14 14 C 1.38947 * 120.00475 * 179.97438 * 12 11 9 15 15 N 1.31412 * 119.99780 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00510 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46942 * 90.00201 * 16 14 12 18 18 H 1.48496 * 109.47122 * 209.99850 * 16 14 12 19 19 H 1.48497 * 109.46825 * 330.00485 * 16 14 12 20 20 N 1.46491 * 109.47053 * 239.99821 * 2 1 3 21 21 C 1.34774 * 120.00114 * 85.00182 * 20 2 1 22 22 O 1.21287 * 120.00316 * 359.97438 * 21 20 2 23 23 C 1.50705 * 120.00550 * 180.02562 * 21 20 2 24 24 C 1.53006 * 110.45170 * 300.70074 * 23 21 20 25 25 C 1.54501 * 110.51566 * 178.09617 * 23 21 20 26 26 C 1.54799 * 103.91162 * 241.18594 * 25 23 21 27 27 O 1.44433 * 104.85578 * 336.11351 * 26 25 23 28 28 C 1.44429 * 105.27188 * 40.46527 * 27 26 25 29 29 H 1.08999 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46934 * 300.00180 * 1 2 3 31 31 H 1.09000 * 109.47005 * 59.99852 * 1 2 3 32 32 H 1.09005 * 109.47507 * 304.99917 * 4 2 1 33 33 H 1.09002 * 109.47110 * 65.00142 * 4 2 1 34 34 H 1.09005 * 109.46832 * 300.00269 * 5 4 2 35 35 H 1.09002 * 109.47082 * 60.00063 * 5 4 2 36 36 H 1.08995 * 109.47064 * 299.99532 * 6 5 4 37 37 H 1.08993 * 109.46990 * 60.00258 * 6 5 4 38 38 H 1.00894 * 111.00477 * 303.95925 * 7 6 5 39 39 H 1.09002 * 109.46978 * 300.00021 * 8 7 6 40 40 H 1.08994 * 109.47164 * 60.00029 * 8 7 6 41 41 H 0.97006 * 119.99754 * 359.97438 * 11 9 8 42 42 H 0.96997 * 120.00552 * 180.02562 * 15 14 12 43 43 H 0.97001 * 120.00392 * 265.00159 * 20 2 1 44 44 H 1.08996 * 109.47351 * 59.29925 * 24 23 21 45 45 H 1.08999 * 109.46680 * 179.29623 * 24 23 21 46 46 H 1.08998 * 109.47007 * 299.29483 * 24 23 21 47 47 H 1.09007 * 110.51219 * 359.85907 * 25 23 21 48 48 H 1.08995 * 110.51573 * 122.57430 * 25 23 21 49 49 H 1.09006 * 110.38705 * 217.25057 * 26 25 23 50 50 H 1.08990 * 110.40462 * 94.99082 * 26 25 23 51 51 H 1.08998 * 110.37043 * 200.65224 * 28 27 26 52 52 H 1.08999 * 110.46465 * 78.36373 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3339 2.5634 7 7 5.5388 -1.2307 2.6249 8 6 6.0651 -1.9135 3.8144 9 6 7.5664 -1.7861 3.8436 10 8 8.1415 -1.1860 2.9602 11 7 8.2703 -2.3398 4.8508 12 6 9.6361 -2.2243 4.8772 13 1 10.1481 -1.6893 4.0910 14 6 10.3617 -2.7947 5.9158 15 7 9.7387 -3.4445 6.8732 16 14 12.2228 -2.6380 5.9513 17 1 12.6019 -1.4085 6.6929 18 1 12.8065 -3.8240 6.6280 19 1 12.7393 -2.5569 4.5614 20 7 2.0183 -0.6906 -1.1961 21 6 2.1471 -0.0183 -2.3570 22 8 1.8582 1.1584 -2.4117 23 6 2.6488 -0.7288 -3.5877 24 6 4.0448 -1.3046 -3.3409 25 6 2.6654 0.2311 -4.7982 26 6 1.6915 -0.4249 -5.8069 27 8 1.6746 -1.8241 -5.4488 28 6 1.6681 -1.8472 -4.0047 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4260 35 1 3.8532 0.4370 1.3574 36 1 3.6401 -0.8739 3.4508 37 1 3.7864 -2.3841 2.5202 38 1 5.9625 -1.5923 1.7837 39 1 5.6447 -1.4576 4.7108 40 1 5.7902 -2.9676 3.7796 41 1 7.8104 -2.8200 5.5571 42 1 10.2451 -3.8424 7.5985 43 1 2.2490 -1.6318 -1.1526 44 1 4.0069 -2.0042 -2.5059 45 1 4.3866 -1.8249 -4.2356 46 1 4.7353 -0.4948 -3.1054 47 1 2.3083 1.2190 -4.5072 48 1 3.6680 0.2955 -5.2209 49 1 2.0579 -0.2984 -6.8257 50 1 0.6947 0.0044 -5.7068 51 1 2.0164 -2.8132 -3.6392 52 1 0.6685 -1.6364 -3.6247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717690113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:04 Heat of formation + Delta-G solvation = -138.670764 kcal Electronic energy + Delta-G solvation = -29618.183500 eV Core-core repulsion = 25423.782114 eV Total energy + Delta-G solvation = -4194.401385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10946 -39.07854 -38.32557 -37.12569 -35.54626 -34.16314 -33.88796 -32.46622 -31.24289 -30.70580 -29.87304 -27.36114 -27.02031 -25.20275 -23.96566 -23.38118 -22.92837 -21.52286 -21.05987 -19.96656 -19.21706 -17.89063 -17.84266 -16.95888 -16.43828 -16.11690 -15.77689 -15.68753 -15.46665 -15.13515 -14.73540 -14.62665 -14.40880 -14.11261 -13.91766 -13.81942 -13.62832 -13.34332 -13.21817 -12.96726 -12.73001 -12.64294 -12.48482 -12.43040 -11.96317 -11.84864 -11.69485 -11.57608 -11.49004 -11.45455 -11.34977 -11.21973 -11.05873 -10.92444 -10.81048 -10.40123 -10.22527 -10.22211 -10.02219 -9.51818 -9.43840 -8.47194 -8.06578 -7.96653 -6.42547 -3.83383 2.25328 2.74035 3.17362 3.25940 3.31811 3.50073 3.87630 3.89947 4.02656 4.20674 4.24747 4.32506 4.47666 4.59613 4.72298 4.74229 4.74337 4.77858 5.03417 5.06657 5.11117 5.13666 5.22123 5.23056 5.24899 5.27274 5.34289 5.36403 5.39940 5.46676 5.51934 5.53997 5.64450 5.67338 5.70473 5.74148 5.78234 5.86549 5.97282 6.03187 6.14291 6.20798 6.27099 6.27600 7.11586 7.21951 7.54435 7.65422 7.85120 8.05596 8.60512 9.17111 9.53474 10.05021 10.75191 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.001719 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.758104 B =16280.883428 C =17421.209202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.091 0.909 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.670 5.670 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.564 5.564 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.270 1.270 20 N -0.719 5.719 21 C 0.529 3.471 22 O -0.534 6.534 23 C -0.117 4.117 24 C -0.136 4.136 25 C -0.144 4.144 26 C 0.044 3.956 27 O -0.369 6.369 28 C 0.060 3.940 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.348 0.652 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.400 0.600 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.061 0.939 51 H 0.100 0.900 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.734 1.446 -17.883 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.468 6.468 11 N -0.201 5.201 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.543 5.543 16 Si 0.758 3.242 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 N -0.371 5.371 21 C 0.315 3.685 22 O -0.411 6.411 23 C -0.121 4.121 24 C -0.194 4.194 25 C -0.181 4.181 26 C -0.033 4.033 27 O -0.288 6.288 28 C -0.017 4.017 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.167 0.833 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.234 0.766 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.120 0.880 48 H 0.102 0.898 49 H 0.113 0.887 50 H 0.079 0.921 51 H 0.118 0.882 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.474 3.041 -18.174 28.296 hybrid contribution 0.641 -1.515 0.639 1.765 sum -20.833 1.526 -17.535 27.273 Atomic orbital electron populations 1.22176 0.95220 1.02100 1.02640 1.21042 0.93830 0.97849 0.83654 0.89115 1.21880 0.96376 1.00954 0.97172 1.21558 0.93893 1.02313 0.97717 1.21973 0.88815 0.97787 0.98460 1.60059 1.03666 1.61098 1.05434 1.21665 0.95221 0.96615 0.94683 1.19827 0.88051 0.84737 0.84825 1.90521 1.71138 1.45970 1.39128 1.41868 1.07410 1.48382 1.22406 1.19707 0.81514 1.32743 1.08930 0.87925 1.25267 1.00725 0.96577 0.95415 1.69610 1.36713 1.35927 1.12090 0.85850 0.82127 0.77670 0.78596 1.20381 1.20936 1.19426 1.46084 1.67320 1.14050 1.09646 1.20208 0.76976 0.87091 0.84238 1.90685 1.49859 1.15887 1.84644 1.22199 0.98415 0.97044 0.94411 1.21851 0.93246 1.01386 1.02880 1.23104 1.01429 1.00388 0.93216 1.23532 0.98916 0.81335 0.99472 1.89145 1.95323 1.24507 1.19804 1.23439 0.97670 0.98385 0.82240 0.92466 0.91406 0.92229 0.89984 0.91387 0.92043 0.90746 0.91157 0.95761 0.83312 0.89654 0.93974 0.77465 0.91879 0.76573 0.91757 0.90737 0.91329 0.88040 0.89811 0.88699 0.92076 0.88184 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.48 37.16 0.35 -0.75 16 2 C 0.14 1.06 2.57 -67.93 -0.17 0.89 16 3 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 4 C -0.13 -0.85 4.75 -26.73 -0.13 -0.97 16 5 C -0.12 -1.09 5.36 -26.73 -0.14 -1.24 16 6 C 0.06 0.67 5.69 -3.82 -0.02 0.65 16 7 N -0.67 -10.68 6.13 -115.07 -0.70 -11.38 16 8 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 9 C 0.44 10.44 7.82 -10.99 -0.09 10.36 16 10 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 11 N -0.56 -14.34 5.29 -10.97 -0.06 -14.40 16 12 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 13 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 14 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 16 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 N -0.72 -5.12 4.40 -53.81 -0.24 -5.36 16 21 C 0.53 4.89 6.37 -10.98 -0.07 4.82 16 22 O -0.53 -6.88 14.95 5.55 0.08 -6.80 16 23 C -0.12 -0.88 0.89 -154.09 -0.14 -1.01 16 24 C -0.14 -0.91 8.18 37.16 0.30 -0.61 16 25 C -0.14 -1.11 6.34 -25.00 -0.16 -1.27 16 26 C 0.04 0.31 7.64 38.11 0.29 0.61 16 27 O -0.37 -3.25 11.65 -35.23 -0.41 -3.66 16 28 C 0.06 0.41 6.70 37.93 0.25 0.66 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.57 7.75 -51.93 -0.40 0.16 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.35 5.69 8.43 -39.30 -0.33 5.36 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.40 2.03 8.04 -40.82 -0.33 1.70 16 44 H 0.06 0.35 7.59 -51.93 -0.39 -0.04 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.10 0.93 6.50 -51.93 -0.34 0.60 16 48 H 0.08 0.58 7.73 -51.93 -0.40 0.18 16 49 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.10 0.51 7.87 -51.93 -0.41 0.10 16 52 H 0.06 0.42 7.86 -51.93 -0.41 0.01 16 LS Contribution 421.97 15.07 6.36 6.36 Total: -1.00 -33.87 421.97 -8.33 -42.19 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -9.16 Total: 11.71 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 0.01 Total: 4.96 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.28 Total: -54.92 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.24 Total: -26.34 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.87 -8.33 -42.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717690113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.477 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds