Wall clock time and date at job start Wed Apr 1 2020 01:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47130 * 2 1 4 4 C 1.52998 * 109.46917 * 119.99769 * 2 1 3 5 5 C 1.53004 * 109.47083 * 185.00061 * 4 2 1 6 6 C 1.52998 * 109.47083 * 179.97438 * 5 4 2 7 7 N 1.46901 * 109.46748 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99963 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47330 * 180.02562 * 8 7 6 10 10 O 1.21290 * 120.00204 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00322 * 180.02562 * 9 8 7 12 12 C 1.37092 * 120.00400 * 179.97438 * 11 9 8 13 13 H 1.08006 * 119.99845 * 0.02562 * 12 11 9 14 14 C 1.38947 * 120.00475 * 179.97438 * 12 11 9 15 15 N 1.31412 * 119.99780 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00510 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46942 * 90.00201 * 16 14 12 18 18 H 1.48496 * 109.47122 * 209.99850 * 16 14 12 19 19 H 1.48497 * 109.46825 * 330.00485 * 16 14 12 20 20 N 1.46491 * 109.47053 * 239.99821 * 2 1 3 21 21 C 1.34774 * 120.00114 * 85.00182 * 20 2 1 22 22 O 1.21287 * 120.00316 * 359.97438 * 21 20 2 23 23 C 1.50705 * 120.00550 * 180.02562 * 21 20 2 24 24 C 1.53006 * 110.45170 * 300.70074 * 23 21 20 25 25 C 1.54501 * 110.51566 * 178.09617 * 23 21 20 26 26 C 1.54799 * 103.91162 * 241.18594 * 25 23 21 27 27 O 1.44433 * 104.85578 * 336.11351 * 26 25 23 28 28 C 1.44429 * 105.27188 * 40.46527 * 27 26 25 29 29 H 1.08999 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46934 * 300.00180 * 1 2 3 31 31 H 1.09000 * 109.47005 * 59.99852 * 1 2 3 32 32 H 1.09005 * 109.47507 * 304.99917 * 4 2 1 33 33 H 1.09002 * 109.47110 * 65.00142 * 4 2 1 34 34 H 1.09005 * 109.46832 * 300.00269 * 5 4 2 35 35 H 1.09002 * 109.47082 * 60.00063 * 5 4 2 36 36 H 1.08995 * 109.47064 * 299.99532 * 6 5 4 37 37 H 1.08993 * 109.46990 * 60.00258 * 6 5 4 38 38 H 1.00894 * 111.00477 * 303.95925 * 7 6 5 39 39 H 1.09002 * 109.46978 * 300.00021 * 8 7 6 40 40 H 1.08994 * 109.47164 * 60.00029 * 8 7 6 41 41 H 0.97006 * 119.99754 * 359.97438 * 11 9 8 42 42 H 0.96997 * 120.00552 * 180.02562 * 15 14 12 43 43 H 0.97001 * 120.00392 * 265.00159 * 20 2 1 44 44 H 1.08996 * 109.47351 * 59.29925 * 24 23 21 45 45 H 1.08999 * 109.46680 * 179.29623 * 24 23 21 46 46 H 1.08998 * 109.47007 * 299.29483 * 24 23 21 47 47 H 1.09007 * 110.51219 * 359.85907 * 25 23 21 48 48 H 1.08995 * 110.51573 * 122.57430 * 25 23 21 49 49 H 1.09006 * 110.38705 * 217.25057 * 26 25 23 50 50 H 1.08990 * 110.40462 * 94.99082 * 26 25 23 51 51 H 1.08998 * 110.37043 * 200.65224 * 28 27 26 52 52 H 1.08999 * 110.46465 * 78.36373 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3339 2.5634 7 7 5.5388 -1.2307 2.6249 8 6 6.0651 -1.9135 3.8144 9 6 7.5664 -1.7861 3.8436 10 8 8.1415 -1.1860 2.9602 11 7 8.2703 -2.3398 4.8508 12 6 9.6361 -2.2243 4.8772 13 1 10.1481 -1.6893 4.0910 14 6 10.3617 -2.7947 5.9158 15 7 9.7387 -3.4445 6.8732 16 14 12.2228 -2.6380 5.9513 17 1 12.6019 -1.4085 6.6929 18 1 12.8065 -3.8240 6.6280 19 1 12.7393 -2.5569 4.5614 20 7 2.0183 -0.6906 -1.1961 21 6 2.1471 -0.0183 -2.3570 22 8 1.8582 1.1584 -2.4117 23 6 2.6488 -0.7288 -3.5877 24 6 4.0448 -1.3046 -3.3409 25 6 2.6654 0.2311 -4.7982 26 6 1.6915 -0.4249 -5.8069 27 8 1.6746 -1.8241 -5.4488 28 6 1.6681 -1.8472 -4.0047 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4260 35 1 3.8532 0.4370 1.3574 36 1 3.6401 -0.8739 3.4508 37 1 3.7864 -2.3841 2.5202 38 1 5.9625 -1.5923 1.7837 39 1 5.6447 -1.4576 4.7108 40 1 5.7902 -2.9676 3.7796 41 1 7.8104 -2.8200 5.5571 42 1 10.2451 -3.8424 7.5985 43 1 2.2490 -1.6318 -1.1526 44 1 4.0069 -2.0042 -2.5059 45 1 4.3866 -1.8249 -4.2356 46 1 4.7353 -0.4948 -3.1054 47 1 2.3083 1.2190 -4.5072 48 1 3.6680 0.2955 -5.2209 49 1 2.0579 -0.2984 -6.8257 50 1 0.6947 0.0044 -5.7068 51 1 2.0164 -2.8132 -3.6392 52 1 0.6685 -1.6364 -3.6247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717690113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:03 Heat of formation + Delta-G solvation = -164.703773 kcal Electronic energy + Delta-G solvation = -29619.312376 eV Core-core repulsion = 25423.782114 eV Total energy + Delta-G solvation = -4195.530261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.77297 -40.16849 -39.70706 -37.99256 -36.66674 -35.85483 -34.81345 -33.42404 -33.14967 -31.48348 -30.47623 -28.64887 -27.57524 -26.67604 -25.08188 -24.24108 -23.60031 -22.38151 -21.71811 -21.04621 -20.60648 -19.90334 -18.48611 -17.86471 -17.56157 -17.12189 -16.89349 -16.51257 -16.37891 -16.18703 -15.95130 -15.80216 -15.60998 -15.25496 -15.15902 -14.74315 -14.51173 -14.26912 -14.09120 -14.01333 -13.61576 -13.50223 -13.29930 -13.23600 -13.08217 -13.05357 -12.96310 -12.76426 -12.42978 -12.39411 -12.28960 -12.14516 -12.09565 -12.02287 -11.81553 -11.67090 -11.57243 -11.51041 -10.81426 -10.76556 -10.35880 -10.11549 -10.02241 -9.29182 -8.47256 -5.96071 1.37766 1.41716 1.53651 1.54370 2.04588 2.11415 2.28954 2.92835 2.94754 3.19991 3.28194 3.50657 3.65663 3.75588 3.79874 3.96570 4.06755 4.09747 4.16856 4.18843 4.31625 4.36597 4.44045 4.50899 4.53965 4.57666 4.63676 4.65763 4.70835 4.71353 4.78633 4.82742 4.83639 4.87936 4.92936 4.95444 5.04291 5.09720 5.19749 5.25688 5.30270 5.40158 5.42190 5.56801 5.70037 5.90832 6.13549 6.43973 6.50477 6.59712 7.12072 7.19329 7.55641 8.11137 8.70036 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.001719 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.758104 B =16280.883428 C =17421.209202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.063 0.937 4 C -0.113 4.113 5 C -0.110 4.110 6 C 0.061 3.939 7 N -0.690 5.690 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.625 6.625 11 N -0.573 5.573 12 C -0.335 4.335 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.273 1.273 20 N -0.707 5.707 21 C 0.527 3.473 22 O -0.578 6.578 23 C -0.114 4.114 24 C -0.134 4.134 25 C -0.146 4.146 26 C 0.044 3.956 27 O -0.386 6.386 28 C 0.062 3.938 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.343 0.657 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.413 0.587 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.110 0.890 50 H 0.061 0.939 51 H 0.122 0.878 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.638 -0.304 -17.370 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.067 4.067 7 N -0.323 5.323 8 C -0.067 4.067 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.465 4.465 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.197 1.197 18 H -0.194 1.194 19 H -0.198 1.198 20 N -0.359 5.359 21 C 0.313 3.687 22 O -0.457 6.457 23 C -0.117 4.117 24 C -0.191 4.191 25 C -0.184 4.184 26 C -0.032 4.032 27 O -0.304 6.304 28 C -0.015 4.015 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.161 0.839 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.250 0.750 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.101 0.899 48 H 0.108 0.892 49 H 0.128 0.872 50 H 0.079 0.921 51 H 0.140 0.860 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.412 1.251 -17.630 28.542 hybrid contribution 0.879 -0.936 0.470 1.368 sum -21.532 0.315 -17.160 27.536 Atomic orbital electron populations 1.22112 0.94257 1.02997 1.02126 1.20999 0.94502 0.96678 0.84163 0.91913 1.21790 0.94135 1.02294 0.96858 1.21484 0.95773 1.00557 0.97033 1.22070 0.85833 0.99352 0.99466 1.60069 1.06381 1.61291 1.04527 1.21523 0.90263 0.98629 0.96238 1.20959 0.90688 0.82779 0.83271 1.90488 1.72858 1.47391 1.40456 1.41939 1.06863 1.49024 1.23188 1.19661 0.83086 1.34335 1.09373 0.90419 1.26039 1.04929 0.95687 0.94614 1.69665 1.38295 1.35779 1.12267 0.84929 0.76811 0.78203 0.78398 1.19744 1.19413 1.19787 1.46017 1.66340 1.14568 1.08982 1.20539 0.76378 0.86638 0.85141 1.90669 1.51875 1.17806 1.85364 1.22186 0.99063 0.97096 0.93382 1.21850 0.92275 1.01191 1.03802 1.23094 1.01878 0.99646 0.93768 1.23595 0.98821 0.80731 1.00044 1.89125 1.95371 1.25134 1.20813 1.23543 0.97532 0.99004 0.81462 0.90771 0.90466 0.94254 0.89031 0.89041 0.91920 0.93143 0.90587 0.93589 0.83886 0.87969 0.91360 0.76914 0.91267 0.75025 0.90221 0.90107 0.92708 0.89942 0.89237 0.87228 0.92071 0.86017 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.48 71.98 0.68 -1.21 16 2 C 0.14 1.98 2.57 44.99 0.12 2.09 16 3 H 0.06 1.27 7.58 -2.39 -0.02 1.25 16 4 C -0.11 -1.22 4.75 30.59 0.15 -1.08 16 5 C -0.11 -1.88 5.36 30.59 0.16 -1.72 16 6 C 0.06 1.22 5.69 86.30 0.49 1.71 16 7 N -0.69 -21.00 6.13 -517.96 -3.17 -24.17 16 8 C 0.07 2.20 6.17 85.56 0.53 2.73 16 9 C 0.44 20.71 7.82 87.66 0.69 21.39 16 10 O -0.63 -34.93 15.78 -3.06 -0.05 -34.98 16 11 N -0.57 -29.35 5.29 -306.99 -1.62 -30.97 16 12 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 13 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 14 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 15 N -0.92 -49.30 13.05 21.66 0.28 -49.01 16 16 Si 0.99 42.85 29.55 68.60 2.03 44.87 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 N -0.71 -9.24 4.40 -442.54 -1.95 -11.19 16 21 C 0.53 9.73 6.37 87.66 0.56 10.29 16 22 O -0.58 -15.60 14.95 -3.05 -0.05 -15.65 16 23 C -0.11 -1.64 0.89 -51.91 -0.05 -1.68 16 24 C -0.13 -1.65 8.18 71.98 0.59 -1.06 16 25 C -0.15 -2.29 6.34 31.72 0.20 -2.09 16 26 C 0.04 0.62 7.64 72.60 0.55 1.17 16 27 O -0.39 -6.31 11.65 -148.98 -1.74 -8.05 16 28 C 0.06 0.75 6.70 72.49 0.49 1.23 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.05 7.75 -2.38 -0.02 1.03 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.34 10.92 8.43 -89.70 -0.76 10.16 16 39 H 0.10 3.09 8.14 -2.39 -0.02 3.08 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.40 19.18 7.90 -92.70 -0.73 18.44 16 42 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 43 H 0.41 3.19 8.04 -92.71 -0.75 2.45 16 44 H 0.08 0.71 7.59 -2.39 -0.02 0.70 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.08 1.63 6.50 -2.38 -0.02 1.62 16 48 H 0.09 1.25 7.73 -2.39 -0.02 1.23 16 49 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 50 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.12 0.92 7.87 -2.39 -0.02 0.90 16 52 H 0.06 0.76 7.86 -2.39 -0.02 0.74 16 Total: -1.00 -75.01 421.97 -1.13 -76.14 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -1.30 Total: 39.71 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.43 Total: 13.30 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -6.46 Total: -115.35 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -1.83 Total: -58.68 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -75.01 -1.13 -76.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717690113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.563 kcal (2) G-P(sol) polarization free energy of solvation -75.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds