Wall clock time and date at job start Wed Apr 1 2020 00:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47079 * 2 1 4 4 O 1.42902 * 109.46817 * 180.02562 * 3 2 1 5 5 C 1.42895 * 113.99622 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47342 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99629 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00235 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99798 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.50519 * 35.07045 * 9 8 6 11 11 C 1.53122 * 109.49722 * 274.99325 * 9 8 6 12 12 C 1.53117 * 109.16359 * 297.71358 * 11 9 8 13 13 C 1.53035 * 109.28011 * 302.34834 * 12 11 9 14 14 N 1.46844 * 109.52461 * 59.17552 * 13 12 11 15 15 C 1.46898 * 111.00288 * 174.16221 * 14 13 12 16 16 C 1.50702 * 109.47021 * 284.43163 * 15 14 13 17 17 O 1.21291 * 120.00222 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00202 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00497 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99631 * 0.02562 * 19 18 16 21 21 C 1.38943 * 120.00269 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00292 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99959 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47211 * 89.99957 * 23 21 19 25 25 H 1.48501 * 109.47114 * 210.00046 * 23 21 19 26 26 H 1.48501 * 109.47091 * 330.00064 * 23 21 19 27 27 C 1.46850 * 111.19993 * 298.26047 * 14 13 12 28 28 H 1.08996 * 109.46513 * 301.72365 * 27 14 13 29 29 C 1.53006 * 109.46165 * 181.75298 * 27 14 13 30 30 H 1.09003 * 109.46648 * 299.99943 * 1 2 3 31 31 H 1.08999 * 109.47308 * 60.00196 * 1 2 3 32 32 H 1.08997 * 109.46908 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47365 * 239.99852 * 2 1 3 34 34 H 1.08999 * 109.47308 * 119.99803 * 2 1 3 35 35 H 1.08993 * 109.47123 * 59.99711 * 3 2 1 36 36 H 1.08999 * 109.46890 * 300.00059 * 3 2 1 37 37 H 1.09001 * 109.47386 * 299.99403 * 5 4 3 38 38 H 1.09003 * 109.47635 * 59.99573 * 5 4 3 39 39 H 0.97005 * 119.99577 * 359.97438 * 8 6 5 40 40 H 1.08991 * 109.52337 * 57.62571 * 11 9 8 41 41 H 1.09006 * 109.51827 * 177.80663 * 11 9 8 42 42 H 1.08995 * 109.50399 * 62.28960 * 12 11 9 43 43 H 1.09002 * 109.50574 * 182.41061 * 12 11 9 44 44 H 1.08999 * 109.46511 * 179.19433 * 13 12 11 45 45 H 1.09005 * 109.46113 * 299.17257 * 13 12 11 46 46 H 1.08996 * 109.47505 * 44.43386 * 15 14 13 47 47 H 1.09000 * 109.47526 * 164.43741 * 15 14 13 48 48 H 0.97003 * 120.00080 * 0.02562 * 18 16 15 49 49 H 0.97000 * 120.00091 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.47257 * 307.72633 * 29 27 14 51 51 H 1.08998 * 109.46589 * 67.73118 * 29 27 14 52 52 H 1.09002 * 109.46762 * 187.72964 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0502 2.7479 -0.0001 6 6 5.5526 2.6290 -0.0001 7 8 6.0741 1.5341 -0.0001 8 7 6.3165 3.7394 0.0008 9 6 7.7769 3.6237 0.0002 10 1 8.0731 2.7573 -0.5912 11 6 8.2769 3.4565 1.4378 12 6 7.9083 4.7034 2.2464 13 6 8.5171 5.9377 1.5773 14 7 8.0072 6.0538 0.2051 15 6 8.4617 7.3022 -0.4216 16 6 7.6701 8.4592 0.1315 17 8 6.8120 8.2631 0.9661 18 7 7.9162 9.7119 -0.3004 19 6 7.1965 10.7645 0.2032 20 1 6.4325 10.5898 0.9463 21 6 7.4499 12.0559 -0.2425 22 7 8.3791 12.2684 -1.1471 23 14 6.4696 13.4902 0.4443 24 1 7.1603 14.0339 1.6411 25 1 6.3573 14.5522 -0.5876 26 1 5.1119 13.0245 0.8252 27 6 8.3895 4.8894 -0.6038 28 1 9.4754 4.7968 -0.6166 29 6 7.8767 5.0715 -2.0338 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 3.7283 3.2894 -0.8896 38 1 3.7290 3.2884 0.8903 39 1 5.8992 4.6151 0.0012 40 1 7.8095 2.5800 1.8864 41 1 9.3598 3.3313 1.4345 42 1 6.8239 4.8064 2.2822 43 1 8.2991 4.6088 3.2596 44 1 8.2445 6.8289 2.1426 45 1 9.6025 5.8402 1.5541 46 1 9.5201 7.4514 -0.2087 47 1 8.3128 7.2428 -1.4998 48 1 8.6026 9.8688 -0.9675 49 1 8.5558 13.1699 -1.4584 50 1 6.8114 5.3011 -2.0113 51 1 8.4149 5.8903 -2.5112 52 1 8.0385 4.1527 -2.5975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717864355.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:52 Heat of formation + Delta-G solvation = -122.634449 kcal Electronic energy + Delta-G solvation = -30725.370632 eV Core-core repulsion = 26531.664634 eV Total energy + Delta-G solvation = -4193.705998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42327 -39.08882 -38.01928 -37.41852 -34.53438 -33.93704 -33.78951 -33.13936 -31.36918 -31.18379 -28.57158 -27.48079 -26.66389 -25.71689 -24.60362 -22.86116 -21.87985 -21.54478 -20.75672 -19.31209 -19.02198 -17.88773 -17.35561 -16.93182 -16.71813 -16.23664 -15.52414 -15.45686 -15.22178 -15.11091 -14.69352 -14.47787 -14.41652 -14.01980 -13.75637 -13.62860 -13.57068 -13.29415 -12.86800 -12.77006 -12.38604 -12.37526 -12.26430 -12.16073 -11.94159 -11.85828 -11.65409 -11.52370 -11.29611 -11.21170 -11.18259 -11.04656 -10.76708 -10.46611 -10.40722 -10.25658 -10.15248 -9.91173 -9.74714 -9.49932 -8.98097 -8.50672 -7.98547 -7.90823 -6.43232 -3.83995 2.62764 2.75138 3.15726 3.24577 3.29823 3.76467 3.89629 3.93669 4.21135 4.58818 4.64119 4.68826 4.75425 4.82609 4.98772 5.01923 5.02504 5.03849 5.06323 5.17549 5.18443 5.18988 5.24228 5.34525 5.36165 5.40878 5.51151 5.62780 5.66263 5.70003 5.73480 5.79051 5.81176 5.89485 5.91323 5.98429 6.02127 6.07191 6.19426 6.27090 6.34670 6.43667 6.55709 6.84981 7.22072 7.33839 7.53310 7.61865 8.04975 8.27402 8.60681 9.17030 9.53827 10.05680 10.74510 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.002370 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.169609 B =11809.926353 C =13321.861776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.043 3.957 6 C 0.514 3.486 7 O -0.531 6.531 8 N -0.707 5.707 9 C 0.162 3.838 10 H 0.089 0.911 11 C -0.134 4.134 12 C -0.112 4.112 13 C 0.059 3.941 14 N -0.510 5.510 15 C 0.039 3.961 16 C 0.446 3.554 17 O -0.577 6.577 18 N -0.567 5.567 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.071 3.929 28 H 0.053 0.947 29 C -0.149 4.149 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.414 0.586 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.025 0.975 46 H 0.049 0.951 47 H 0.094 0.906 48 H 0.391 0.609 49 H 0.271 0.729 50 H 0.067 0.933 51 H 0.062 0.938 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.321 -18.674 -0.370 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.284 6.284 5 C -0.037 4.037 6 C 0.299 3.701 7 O -0.407 6.407 8 N -0.361 5.361 9 C 0.057 3.943 10 H 0.107 0.893 11 C -0.172 4.172 12 C -0.149 4.149 13 C -0.069 4.069 14 N -0.235 5.235 15 C -0.092 4.092 16 C 0.231 3.769 17 O -0.460 6.460 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.038 4.038 28 H 0.071 0.929 29 C -0.207 4.207 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.043 0.957 46 H 0.067 0.933 47 H 0.112 0.888 48 H 0.224 0.776 49 H 0.081 0.919 50 H 0.086 0.914 51 H 0.081 0.919 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.874 -19.573 0.126 20.436 hybrid contribution 0.583 1.725 -0.165 1.829 sum -5.291 -17.848 -0.039 18.616 Atomic orbital electron populations 1.21701 0.94708 1.02240 1.02067 1.21445 0.95572 0.95487 1.03559 1.22633 0.80628 0.98153 1.00372 1.87981 1.19444 1.25450 1.95478 1.22201 0.91926 0.86694 1.02840 1.20189 0.88539 0.84710 0.76661 1.90699 1.74629 1.26623 1.48775 1.45852 1.06520 1.09190 1.74545 1.20946 0.79665 0.97229 0.96474 0.89282 1.22009 1.00811 0.98822 0.95593 1.21516 1.02079 0.93342 0.98007 1.22145 0.95620 0.99713 0.89382 1.61462 1.60267 1.00034 1.01747 1.21986 0.97294 0.89881 1.00068 1.19758 0.87240 0.83545 0.86377 1.90502 1.35767 1.84327 1.35454 1.41876 1.34975 1.05029 1.38503 1.19665 1.16622 0.84783 1.21601 0.87986 1.25248 0.97261 0.98846 0.96658 1.69609 1.31989 1.22718 1.30067 0.85879 0.79927 0.80297 0.78302 1.20478 1.20965 1.19459 1.21915 0.97670 0.90492 0.93721 0.92930 1.21939 1.02627 1.01704 0.94395 0.92486 0.92490 0.92017 0.91042 0.91035 0.93112 0.93144 0.90250 0.90155 0.74953 0.91335 0.91439 0.90954 0.91804 0.89037 0.95673 0.93301 0.88804 0.77592 0.91921 0.91368 0.91945 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.98 6.30 -26.73 -0.17 -1.15 16 3 C 0.06 0.52 5.94 37.16 0.22 0.74 16 4 O -0.37 -4.53 9.88 -55.14 -0.54 -5.08 16 5 C 0.04 0.46 6.42 36.01 0.23 0.69 16 6 C 0.51 6.77 7.87 -10.98 -0.09 6.69 16 7 O -0.53 -8.99 16.16 -14.35 -0.23 -9.22 16 8 N -0.71 -8.42 3.82 -53.73 -0.21 -8.62 16 9 C 0.16 1.92 2.25 -67.85 -0.15 1.76 16 10 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 11 C -0.13 -1.57 5.67 -26.61 -0.15 -1.72 16 12 C -0.11 -1.41 5.93 -26.65 -0.16 -1.57 16 13 C 0.06 0.86 5.11 -3.84 -0.02 0.84 16 14 N -0.51 -7.42 3.53 -228.12 -0.81 -8.22 16 15 C 0.04 0.63 5.31 -4.98 -0.03 0.61 16 16 C 0.45 9.85 7.49 -10.99 -0.08 9.77 16 17 O -0.58 -14.54 14.74 5.55 0.08 -14.46 16 18 N -0.57 -13.77 5.29 -10.97 -0.06 -13.82 16 19 C -0.30 -8.02 9.68 -14.94 -0.14 -8.17 16 20 H 0.10 2.89 7.16 -52.49 -0.38 2.52 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 22 N -0.90 -24.07 13.05 55.50 0.72 -23.34 16 23 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 C 0.07 0.84 2.15 -67.72 -0.15 0.69 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 C -0.15 -1.64 8.31 37.16 0.31 -1.33 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.41 4.97 7.94 -40.82 -0.32 4.64 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.00 7.72 -51.93 -0.40 0.60 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.62 6.69 -51.93 -0.35 1.28 16 45 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 0.75 8.00 -51.93 -0.42 0.34 16 47 H 0.09 1.39 5.42 -51.93 -0.28 1.10 16 48 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 49 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 50 H 0.07 0.80 7.66 -51.93 -0.40 0.40 16 51 H 0.06 0.67 6.38 -51.93 -0.33 0.34 16 52 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 LS Contribution 414.07 15.07 6.24 6.24 Total: -1.00 -32.10 414.07 -8.99 -41.09 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -9.07 Total: 12.01 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -0.10 Total: 7.81 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.34 Total: -54.02 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.69 Total: -28.76 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.10 -8.99 -41.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717864355.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.543 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds