Wall clock time and date at job start Wed Apr 1 2020 00:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47079 * 2 1 4 4 O 1.42902 * 109.46817 * 180.02562 * 3 2 1 5 5 C 1.42895 * 113.99622 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47342 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99629 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00235 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99798 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.50519 * 35.07045 * 9 8 6 11 11 C 1.53122 * 109.49722 * 274.99325 * 9 8 6 12 12 C 1.53117 * 109.16359 * 297.71358 * 11 9 8 13 13 C 1.53035 * 109.28011 * 302.34834 * 12 11 9 14 14 N 1.46844 * 109.52461 * 59.17552 * 13 12 11 15 15 C 1.46898 * 111.00288 * 174.16221 * 14 13 12 16 16 C 1.50702 * 109.47021 * 284.43163 * 15 14 13 17 17 O 1.21291 * 120.00222 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00202 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00497 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99631 * 0.02562 * 19 18 16 21 21 C 1.38943 * 120.00269 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00292 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99959 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47211 * 89.99957 * 23 21 19 25 25 H 1.48501 * 109.47114 * 210.00046 * 23 21 19 26 26 H 1.48501 * 109.47091 * 330.00064 * 23 21 19 27 27 C 1.46850 * 111.19993 * 298.26047 * 14 13 12 28 28 H 1.08996 * 109.46513 * 301.72365 * 27 14 13 29 29 C 1.53006 * 109.46165 * 181.75298 * 27 14 13 30 30 H 1.09003 * 109.46648 * 299.99943 * 1 2 3 31 31 H 1.08999 * 109.47308 * 60.00196 * 1 2 3 32 32 H 1.08997 * 109.46908 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47365 * 239.99852 * 2 1 3 34 34 H 1.08999 * 109.47308 * 119.99803 * 2 1 3 35 35 H 1.08993 * 109.47123 * 59.99711 * 3 2 1 36 36 H 1.08999 * 109.46890 * 300.00059 * 3 2 1 37 37 H 1.09001 * 109.47386 * 299.99403 * 5 4 3 38 38 H 1.09003 * 109.47635 * 59.99573 * 5 4 3 39 39 H 0.97005 * 119.99577 * 359.97438 * 8 6 5 40 40 H 1.08991 * 109.52337 * 57.62571 * 11 9 8 41 41 H 1.09006 * 109.51827 * 177.80663 * 11 9 8 42 42 H 1.08995 * 109.50399 * 62.28960 * 12 11 9 43 43 H 1.09002 * 109.50574 * 182.41061 * 12 11 9 44 44 H 1.08999 * 109.46511 * 179.19433 * 13 12 11 45 45 H 1.09005 * 109.46113 * 299.17257 * 13 12 11 46 46 H 1.08996 * 109.47505 * 44.43386 * 15 14 13 47 47 H 1.09000 * 109.47526 * 164.43741 * 15 14 13 48 48 H 0.97003 * 120.00080 * 0.02562 * 18 16 15 49 49 H 0.97000 * 120.00091 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.47257 * 307.72633 * 29 27 14 51 51 H 1.08998 * 109.46589 * 67.73118 * 29 27 14 52 52 H 1.09002 * 109.46762 * 187.72964 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0502 2.7479 -0.0001 6 6 5.5526 2.6290 -0.0001 7 8 6.0741 1.5341 -0.0001 8 7 6.3165 3.7394 0.0008 9 6 7.7769 3.6237 0.0002 10 1 8.0731 2.7573 -0.5912 11 6 8.2769 3.4565 1.4378 12 6 7.9083 4.7034 2.2464 13 6 8.5171 5.9377 1.5773 14 7 8.0072 6.0538 0.2051 15 6 8.4617 7.3022 -0.4216 16 6 7.6701 8.4592 0.1315 17 8 6.8120 8.2631 0.9661 18 7 7.9162 9.7119 -0.3004 19 6 7.1965 10.7645 0.2032 20 1 6.4325 10.5898 0.9463 21 6 7.4499 12.0559 -0.2425 22 7 8.3791 12.2684 -1.1471 23 14 6.4696 13.4902 0.4443 24 1 7.1603 14.0339 1.6411 25 1 6.3573 14.5522 -0.5876 26 1 5.1119 13.0245 0.8252 27 6 8.3895 4.8894 -0.6038 28 1 9.4754 4.7968 -0.6166 29 6 7.8767 5.0715 -2.0338 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 3.7283 3.2894 -0.8896 38 1 3.7290 3.2884 0.8903 39 1 5.8992 4.6151 0.0012 40 1 7.8095 2.5800 1.8864 41 1 9.3598 3.3313 1.4345 42 1 6.8239 4.8064 2.2822 43 1 8.2991 4.6088 3.2596 44 1 8.2445 6.8289 2.1426 45 1 9.6025 5.8402 1.5541 46 1 9.5201 7.4514 -0.2087 47 1 8.3128 7.2428 -1.4998 48 1 8.6026 9.8688 -0.9675 49 1 8.5558 13.1699 -1.4584 50 1 6.8114 5.3011 -2.0113 51 1 8.4149 5.8903 -2.5112 52 1 8.0385 4.1527 -2.5975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717864355.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:52 Heat of formation + Delta-G solvation = -144.240881 kcal Electronic energy + Delta-G solvation = -30726.307558 eV Core-core repulsion = 26531.664634 eV Total energy + Delta-G solvation = -4194.642924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.49086 -40.33308 -39.37288 -38.51633 -36.01131 -35.39856 -34.58334 -34.18470 -33.16934 -32.38418 -29.51169 -28.77071 -27.67168 -26.50116 -26.28402 -24.05711 -22.62481 -22.49313 -21.75143 -20.92130 -20.17416 -19.78693 -18.36356 -17.99118 -17.51188 -17.48019 -16.79368 -16.62435 -16.40570 -16.28141 -16.12925 -15.64747 -15.50117 -15.37444 -15.10802 -14.82409 -14.53521 -14.32444 -14.07802 -13.91211 -13.64474 -13.40833 -13.09934 -13.05547 -13.02769 -12.88820 -12.86207 -12.84756 -12.70950 -12.37331 -12.28755 -12.11311 -11.84041 -11.81522 -11.78440 -11.60488 -11.39679 -11.23550 -10.81198 -10.68904 -10.23618 -9.99385 -9.94092 -9.16996 -8.42065 -5.89621 1.39629 1.43337 1.55259 1.61171 1.87335 2.14079 2.30252 2.70242 3.03264 3.25321 3.47333 3.62149 3.81571 3.84528 4.00477 4.02731 4.10619 4.12078 4.24112 4.27283 4.33028 4.37312 4.41640 4.42404 4.45573 4.52764 4.56788 4.58751 4.63685 4.74082 4.81386 4.85457 4.87390 4.98610 5.00677 5.03605 5.15117 5.22798 5.23745 5.29028 5.34989 5.39087 5.45339 5.56402 5.93061 6.09021 6.13464 6.24555 6.62269 6.66885 7.19225 7.26688 7.64615 8.20548 8.75278 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.002370 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.169609 B =11809.926353 C =13321.861776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.053 3.947 4 O -0.396 6.396 5 C 0.043 3.957 6 C 0.513 3.487 7 O -0.573 6.573 8 N -0.699 5.699 9 C 0.161 3.839 10 H 0.089 0.911 11 C -0.126 4.126 12 C -0.104 4.104 13 C 0.062 3.938 14 N -0.520 5.520 15 C 0.052 3.948 16 C 0.446 3.554 17 O -0.610 6.610 18 N -0.579 5.579 19 C -0.325 4.325 20 H 0.079 0.921 21 C -0.016 4.016 22 N -0.922 5.922 23 Si 0.989 3.011 24 H -0.274 1.274 25 H -0.273 1.273 26 H -0.273 1.273 27 C 0.077 3.923 28 H 0.070 0.930 29 C -0.148 4.148 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.414 0.586 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.041 0.959 46 H 0.066 0.934 47 H 0.116 0.884 48 H 0.394 0.606 49 H 0.275 0.725 50 H 0.058 0.942 51 H 0.067 0.933 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.312 -18.879 -0.968 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.023 4.023 4 O -0.315 6.315 5 C -0.036 4.036 6 C 0.299 3.701 7 O -0.452 6.452 8 N -0.352 5.352 9 C 0.056 3.944 10 H 0.107 0.893 11 C -0.165 4.165 12 C -0.141 4.141 13 C -0.066 4.066 14 N -0.246 5.246 15 C -0.079 4.079 16 C 0.234 3.766 17 O -0.496 6.496 18 N -0.217 5.217 19 C -0.455 4.455 20 H 0.097 0.903 21 C -0.215 4.215 22 N -0.564 5.564 23 Si 0.813 3.187 24 H -0.199 1.199 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.031 4.031 28 H 0.088 0.912 29 C -0.205 4.205 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.251 0.749 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.133 0.867 48 H 0.228 0.772 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.086 0.914 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.856 -19.774 -0.481 20.628 hybrid contribution 0.574 1.725 0.047 1.818 sum -5.282 -18.049 -0.434 18.811 Atomic orbital electron populations 1.21676 0.93010 1.02928 1.02627 1.21472 0.96989 0.94943 1.02722 1.22838 0.79063 0.98893 1.01476 1.87945 1.21344 1.26457 1.95738 1.22288 0.90113 0.86604 1.04607 1.20637 0.89657 0.84144 0.75619 1.90675 1.75546 1.28060 1.50934 1.45840 1.06689 1.08926 1.73710 1.20991 0.79587 0.97207 0.96602 0.89293 1.21943 1.01805 0.97605 0.95098 1.21433 1.00986 0.93014 0.98710 1.22049 0.96599 0.98780 0.89124 1.61376 1.60909 1.00250 1.02057 1.21832 0.96894 0.88284 1.00881 1.20785 0.86598 0.84199 0.85051 1.90480 1.37320 1.84990 1.36762 1.41949 1.35263 1.05440 1.39069 1.19607 1.17296 0.86350 1.22243 0.90312 1.25975 0.98068 1.00663 0.96779 1.69671 1.32685 1.23445 1.30573 0.84982 0.78353 0.77401 0.77945 1.19935 1.19833 1.19734 1.21952 0.98665 0.88904 0.93609 0.91216 1.21933 1.02009 1.02654 0.93895 0.91965 0.91852 0.91314 0.91828 0.91969 0.92072 0.91850 0.88067 0.88556 0.74871 0.92351 0.89687 0.92513 0.90687 0.92749 0.94104 0.91614 0.86654 0.77218 0.91533 0.92312 0.91446 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.91 6.30 30.60 0.19 -1.71 16 3 C 0.05 0.90 5.94 71.98 0.43 1.32 16 4 O -0.40 -9.64 9.88 -129.94 -1.28 -10.92 16 5 C 0.04 0.88 6.42 71.24 0.46 1.34 16 6 C 0.51 13.23 7.87 87.66 0.69 13.92 16 7 O -0.57 -19.38 16.16 16.01 0.26 -19.12 16 8 N -0.70 -15.96 3.82 -442.28 -1.69 -17.65 16 9 C 0.16 3.55 2.25 45.05 0.10 3.65 16 10 H 0.09 2.04 7.58 -2.39 -0.02 2.02 16 11 C -0.13 -2.75 5.67 30.67 0.17 -2.57 16 12 C -0.10 -2.52 5.93 30.65 0.18 -2.34 16 13 C 0.06 1.75 5.11 86.33 0.44 2.19 16 14 N -0.52 -14.37 3.53 -875.65 -3.09 -17.46 16 15 C 0.05 1.62 5.31 85.56 0.45 2.07 16 16 C 0.45 19.78 7.49 87.66 0.66 20.44 16 17 O -0.61 -31.34 14.74 -3.06 -0.05 -31.39 16 18 N -0.58 -28.40 5.29 -306.99 -1.62 -30.02 16 19 C -0.33 -17.87 9.68 84.04 0.81 -17.05 16 20 H 0.08 4.62 7.16 -2.91 -0.02 4.59 16 21 C -0.02 -0.81 5.50 84.92 0.47 -0.35 16 22 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 23 Si 0.99 42.20 29.55 68.60 2.03 44.23 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 C 0.08 1.63 2.15 44.94 0.10 1.73 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 C -0.15 -2.87 8.31 71.98 0.60 -2.27 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.41 9.57 7.94 -92.70 -0.74 8.83 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.06 1.55 7.72 -2.39 -0.02 1.54 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.05 1.95 6.69 -2.39 -0.02 1.93 16 45 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.07 1.87 8.00 -2.39 -0.02 1.85 16 47 H 0.12 3.13 5.42 -2.39 -0.01 3.12 16 48 H 0.39 18.49 7.90 -92.71 -0.73 17.76 16 49 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 50 H 0.06 1.26 7.66 -2.39 -0.02 1.25 16 51 H 0.07 1.25 6.38 -2.39 -0.02 1.24 16 52 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 Total: -1.00 -70.22 414.07 0.75 -69.47 By element: Atomic # 1 Polarization: 42.48 SS G_CDS: -0.55 Total: 41.93 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 6.47 Total: 19.54 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -6.12 Total: -113.74 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -1.07 Total: -61.43 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -70.22 0.75 -69.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717864355.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.775 kcal (2) G-P(sol) polarization free energy of solvation -70.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds