Wall clock time and date at job start Wed Apr 1 2020 00:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46752 * 2 1 4 4 O 1.42898 * 109.46681 * 180.02562 * 3 2 1 5 5 C 1.42905 * 113.99669 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46965 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99748 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99677 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.53435 * 325.09670 * 9 8 6 11 11 C 1.53123 * 109.50280 * 85.19846 * 9 8 6 12 12 C 1.53117 * 109.16036 * 177.59509 * 11 9 8 13 13 C 1.53036 * 109.27488 * 302.34352 * 12 11 9 14 14 N 1.46843 * 109.52932 * 59.17965 * 13 12 11 15 15 C 1.46893 * 111.00305 * 174.15970 * 14 13 12 16 16 C 1.50704 * 109.47461 * 288.14109 * 15 14 13 17 17 O 1.21298 * 119.99373 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00651 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00015 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00500 * 0.02562 * 19 18 16 21 21 C 1.38958 * 119.99661 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99995 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99872 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46973 * 90.00624 * 23 21 19 25 25 H 1.48503 * 109.46911 * 210.00128 * 23 21 19 26 26 H 1.48495 * 109.47410 * 330.00256 * 23 21 19 27 27 C 1.46846 * 111.19597 * 298.26162 * 14 13 12 28 28 H 1.09000 * 109.46145 * 301.71952 * 27 14 13 29 29 C 1.53008 * 109.46264 * 181.75502 * 27 14 13 30 30 H 1.08998 * 109.46994 * 60.00122 * 1 2 3 31 31 H 1.08998 * 109.46962 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46942 * 300.00121 * 1 2 3 33 33 H 1.08994 * 109.47451 * 239.99948 * 2 1 3 34 34 H 1.08998 * 109.46994 * 119.99878 * 2 1 3 35 35 H 1.08994 * 109.47185 * 59.99786 * 3 2 1 36 36 H 1.09002 * 109.46840 * 299.99919 * 3 2 1 37 37 H 1.08995 * 109.47211 * 59.99492 * 5 4 3 38 38 H 1.09004 * 109.46928 * 299.99821 * 5 4 3 39 39 H 0.96996 * 120.00082 * 359.97438 * 8 6 5 40 40 H 1.09003 * 109.51938 * 297.49929 * 11 9 8 41 41 H 1.08993 * 109.52256 * 57.68618 * 11 9 8 42 42 H 1.08997 * 109.50411 * 62.28180 * 12 11 9 43 43 H 1.09002 * 109.50049 * 182.36365 * 12 11 9 44 44 H 1.09001 * 109.46109 * 299.16310 * 13 12 11 45 45 H 1.08998 * 109.46103 * 179.20005 * 13 12 11 46 46 H 1.09001 * 109.47384 * 48.14333 * 15 14 13 47 47 H 1.09002 * 109.47313 * 168.14151 * 15 14 13 48 48 H 0.97001 * 119.99417 * 0.02562 * 18 16 15 49 49 H 0.96996 * 120.00345 * 179.97438 * 22 21 19 50 50 H 1.08995 * 109.46776 * 67.37503 * 29 27 14 51 51 H 1.08998 * 109.47238 * 187.37845 * 29 27 14 52 52 H 1.08999 * 109.46521 * 307.38001 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0501 2.7481 -0.0012 6 6 5.5524 2.6292 -0.0012 7 8 6.0741 1.5343 -0.0002 8 7 6.3163 3.7395 -0.0012 9 6 7.7768 3.6239 -0.0006 10 1 8.0734 2.7554 0.5875 11 6 8.2774 3.4627 -1.4387 12 6 9.8074 3.4029 -1.4345 13 6 10.3608 4.6725 -0.7834 14 7 9.8536 4.7807 0.5904 15 6 10.4725 5.9129 1.2925 16 6 11.9113 5.5872 1.6004 17 8 12.3756 4.5172 1.2673 18 7 12.6826 6.4850 2.2450 19 6 13.9913 6.1884 2.5256 20 1 14.4045 5.2354 2.2297 21 6 14.7863 7.1139 3.1907 22 7 16.0409 6.8298 3.4592 23 14 14.0718 8.7625 3.7018 24 1 13.4944 8.6504 5.0653 25 1 15.1453 9.7886 3.7017 26 1 13.0079 9.1591 2.7447 27 6 8.3891 4.8871 0.6088 28 1 8.0808 5.7566 0.0283 29 6 7.9072 5.0415 2.0528 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9564 -0.8900 37 1 3.7288 3.2893 0.8886 38 1 3.7281 3.2887 -0.8913 39 1 5.8991 4.6152 -0.0016 40 1 7.8780 2.5411 -1.8622 41 1 7.9477 4.3122 -2.0365 42 1 10.1360 2.5310 -0.8689 43 1 10.1716 3.3303 -2.4593 44 1 10.0433 5.5430 -1.3574 45 1 11.4497 4.6267 -0.7659 46 1 10.4280 6.8003 0.6611 47 1 9.9356 6.1013 2.2222 48 1 12.3113 7.3408 2.5111 49 1 16.5959 7.4760 3.9231 50 1 8.2345 6.0049 2.4439 51 1 6.8189 4.9890 2.0803 52 1 8.3253 4.2408 2.6628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717864356.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:56 Heat of formation + Delta-G solvation = -113.594747 kcal Electronic energy + Delta-G solvation = -30148.362796 eV Core-core repulsion = 25955.048788 eV Total energy + Delta-G solvation = -4193.314007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.47344 -39.29536 -38.21705 -37.60155 -34.90005 -34.09720 -33.86985 -33.31933 -31.63223 -31.31273 -28.81245 -27.56023 -26.72960 -25.87433 -24.48690 -22.83393 -22.01453 -21.45849 -20.71892 -19.90524 -19.30183 -18.28834 -17.53204 -17.18939 -16.91754 -16.24298 -15.89209 -15.45710 -15.31401 -15.18363 -14.86055 -14.66388 -14.42158 -13.99125 -13.89019 -13.76236 -13.57930 -13.37009 -13.04927 -12.65057 -12.55781 -12.45035 -12.43435 -12.36715 -12.20561 -12.06946 -11.90801 -11.57806 -11.37912 -11.33086 -11.20252 -11.08294 -10.82708 -10.65674 -10.58886 -10.31478 -10.12587 -9.96626 -9.92028 -9.52112 -9.21264 -8.57473 -8.15625 -7.96715 -6.29008 -3.80184 2.39898 2.45320 3.02272 3.06934 3.15198 3.50669 3.76742 3.93567 4.11424 4.37354 4.48606 4.54897 4.62605 4.63231 4.69510 4.75974 4.85022 4.85168 4.99555 5.01553 5.04164 5.11455 5.21213 5.24667 5.25888 5.30203 5.46617 5.53273 5.54774 5.61380 5.65928 5.67534 5.76908 5.78380 5.81361 5.92778 5.96872 6.00979 6.05701 6.17639 6.24384 6.37946 6.49111 6.64303 7.14281 7.26910 7.30731 7.60844 8.01812 8.17193 8.62945 8.98066 9.44982 9.86863 10.84307 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025995 B = 0.001833 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.860535 B =15270.412721 C =15774.574007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.363 6.363 5 C 0.045 3.955 6 C 0.514 3.486 7 O -0.513 6.513 8 N -0.724 5.724 9 C 0.156 3.844 10 H 0.101 0.899 11 C -0.129 4.129 12 C -0.112 4.112 13 C 0.055 3.945 14 N -0.506 5.506 15 C 0.039 3.961 16 C 0.454 3.546 17 O -0.555 6.555 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.883 5.883 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.078 3.922 28 H 0.041 0.959 29 C -0.152 4.152 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.397 0.603 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.024 0.976 45 H 0.098 0.902 46 H 0.049 0.951 47 H 0.095 0.905 48 H 0.369 0.631 49 H 0.273 0.727 50 H 0.060 0.940 51 H 0.058 0.942 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.923 -1.530 -8.178 32.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.035 4.035 6 C 0.298 3.702 7 O -0.386 6.386 8 N -0.377 5.377 9 C 0.052 3.948 10 H 0.119 0.881 11 C -0.168 4.168 12 C -0.150 4.150 13 C -0.072 4.072 14 N -0.231 5.231 15 C -0.092 4.092 16 C 0.239 3.761 17 O -0.437 6.437 18 N -0.233 5.233 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.031 4.031 28 H 0.059 0.941 29 C -0.209 4.209 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.231 0.769 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.116 0.884 46 H 0.067 0.933 47 H 0.113 0.887 48 H 0.202 0.798 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.077 0.923 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -29.776 -3.632 -8.058 31.060 hybrid contribution -0.993 3.019 0.079 3.179 sum -30.769 -0.614 -7.980 31.793 Atomic orbital electron populations 1.21697 0.94640 1.02387 1.01954 1.21456 0.95605 0.95360 1.03788 1.22644 0.80444 0.98387 1.00206 1.88024 1.19583 1.25142 1.95417 1.22185 0.91778 0.87043 1.02482 1.20185 0.88465 0.84712 0.76820 1.90765 1.74441 1.26363 1.47068 1.45909 1.07108 1.08481 1.76210 1.20969 0.77432 0.99458 0.96967 0.88058 1.21984 0.96788 1.01983 0.96002 1.21509 0.93679 0.99238 1.00564 1.22218 1.02315 0.95984 0.86680 1.61381 1.02597 1.42480 1.16611 1.21986 0.95742 0.91819 0.99677 1.19645 0.86836 0.85900 0.83699 1.90560 1.74078 1.23911 1.55104 1.42205 1.11807 1.15995 1.53335 1.19427 0.84103 1.04876 1.34774 0.86275 1.25024 0.95414 0.98231 0.97482 1.69618 1.05929 1.36003 1.40731 0.86685 0.79207 0.84143 0.79398 1.19658 1.20253 1.19599 1.21753 0.89001 0.95597 0.96795 0.94114 1.21985 1.00502 1.02849 0.95604 0.92546 0.91896 0.92519 0.90926 0.90879 0.93137 0.93198 0.90310 0.90385 0.76889 0.91354 0.92347 0.90379 0.91286 0.95769 0.88377 0.93313 0.88681 0.79839 0.91670 0.92080 0.92272 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.81 6.30 -26.72 -0.17 -0.97 16 3 C 0.06 0.40 5.94 37.16 0.22 0.62 16 4 O -0.36 -3.77 9.88 -55.14 -0.54 -4.32 16 5 C 0.05 0.34 6.42 36.01 0.23 0.57 16 6 C 0.51 5.66 7.87 -10.99 -0.09 5.57 16 7 O -0.51 -8.33 16.16 -14.35 -0.23 -8.56 16 8 N -0.72 -6.38 4.29 -53.72 -0.23 -6.61 16 9 C 0.16 1.82 2.05 -67.84 -0.14 1.68 16 10 H 0.10 1.52 7.58 -51.93 -0.39 1.13 16 11 C -0.13 -1.50 5.58 -26.61 -0.15 -1.65 16 12 C -0.11 -1.48 6.09 -26.65 -0.16 -1.65 16 13 C 0.06 0.84 5.11 -3.84 -0.02 0.82 16 14 N -0.51 -7.80 4.12 -228.13 -0.94 -8.74 16 15 C 0.04 0.63 5.26 -4.98 -0.03 0.61 16 16 C 0.45 10.16 7.47 -10.99 -0.08 10.07 16 17 O -0.56 -14.71 14.42 5.54 0.08 -14.63 16 18 N -0.59 -13.99 5.09 -10.96 -0.06 -14.04 16 19 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 20 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.80 13.96 55.50 0.77 -25.03 16 23 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 27 C 0.08 0.90 2.02 -67.72 -0.14 0.76 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 C -0.15 -1.59 8.52 37.16 0.32 -1.27 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.40 2.16 8.46 -40.82 -0.35 1.81 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 1.82 6.35 -51.93 -0.33 1.49 16 46 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 47 H 0.10 1.35 5.55 -51.93 -0.29 1.06 16 48 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 49 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 51 H 0.06 0.48 7.31 -51.93 -0.38 0.10 16 52 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 412.04 15.07 6.21 6.21 Total: -1.00 -35.92 412.04 -8.78 -44.69 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -9.04 Total: 9.26 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.08 Total: 7.22 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.45 Total: -54.42 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.70 Total: -27.51 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.92 -8.78 -44.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717864356.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.901 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds