Wall clock time and date at job start Wed Apr 1 2020 00:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46752 * 2 1 4 4 O 1.42898 * 109.46681 * 180.02562 * 3 2 1 5 5 C 1.42905 * 113.99669 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46965 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99748 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99677 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.53435 * 325.09670 * 9 8 6 11 11 C 1.53123 * 109.50280 * 85.19846 * 9 8 6 12 12 C 1.53117 * 109.16036 * 177.59509 * 11 9 8 13 13 C 1.53036 * 109.27488 * 302.34352 * 12 11 9 14 14 N 1.46843 * 109.52932 * 59.17965 * 13 12 11 15 15 C 1.46893 * 111.00305 * 174.15970 * 14 13 12 16 16 C 1.50704 * 109.47461 * 288.14109 * 15 14 13 17 17 O 1.21298 * 119.99373 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00651 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00015 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00500 * 0.02562 * 19 18 16 21 21 C 1.38958 * 119.99661 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99995 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99872 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46973 * 90.00624 * 23 21 19 25 25 H 1.48503 * 109.46911 * 210.00128 * 23 21 19 26 26 H 1.48495 * 109.47410 * 330.00256 * 23 21 19 27 27 C 1.46846 * 111.19597 * 298.26162 * 14 13 12 28 28 H 1.09000 * 109.46145 * 301.71952 * 27 14 13 29 29 C 1.53008 * 109.46264 * 181.75502 * 27 14 13 30 30 H 1.08998 * 109.46994 * 60.00122 * 1 2 3 31 31 H 1.08998 * 109.46962 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46942 * 300.00121 * 1 2 3 33 33 H 1.08994 * 109.47451 * 239.99948 * 2 1 3 34 34 H 1.08998 * 109.46994 * 119.99878 * 2 1 3 35 35 H 1.08994 * 109.47185 * 59.99786 * 3 2 1 36 36 H 1.09002 * 109.46840 * 299.99919 * 3 2 1 37 37 H 1.08995 * 109.47211 * 59.99492 * 5 4 3 38 38 H 1.09004 * 109.46928 * 299.99821 * 5 4 3 39 39 H 0.96996 * 120.00082 * 359.97438 * 8 6 5 40 40 H 1.09003 * 109.51938 * 297.49929 * 11 9 8 41 41 H 1.08993 * 109.52256 * 57.68618 * 11 9 8 42 42 H 1.08997 * 109.50411 * 62.28180 * 12 11 9 43 43 H 1.09002 * 109.50049 * 182.36365 * 12 11 9 44 44 H 1.09001 * 109.46109 * 299.16310 * 13 12 11 45 45 H 1.08998 * 109.46103 * 179.20005 * 13 12 11 46 46 H 1.09001 * 109.47384 * 48.14333 * 15 14 13 47 47 H 1.09002 * 109.47313 * 168.14151 * 15 14 13 48 48 H 0.97001 * 119.99417 * 0.02562 * 18 16 15 49 49 H 0.96996 * 120.00345 * 179.97438 * 22 21 19 50 50 H 1.08995 * 109.46776 * 67.37503 * 29 27 14 51 51 H 1.08998 * 109.47238 * 187.37845 * 29 27 14 52 52 H 1.08999 * 109.46521 * 307.38001 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0501 2.7481 -0.0012 6 6 5.5524 2.6292 -0.0012 7 8 6.0741 1.5343 -0.0002 8 7 6.3163 3.7395 -0.0012 9 6 7.7768 3.6239 -0.0006 10 1 8.0734 2.7554 0.5875 11 6 8.2774 3.4627 -1.4387 12 6 9.8074 3.4029 -1.4345 13 6 10.3608 4.6725 -0.7834 14 7 9.8536 4.7807 0.5904 15 6 10.4725 5.9129 1.2925 16 6 11.9113 5.5872 1.6004 17 8 12.3756 4.5172 1.2673 18 7 12.6826 6.4850 2.2450 19 6 13.9913 6.1884 2.5256 20 1 14.4045 5.2354 2.2297 21 6 14.7863 7.1139 3.1907 22 7 16.0409 6.8298 3.4592 23 14 14.0718 8.7625 3.7018 24 1 13.4944 8.6504 5.0653 25 1 15.1453 9.7886 3.7017 26 1 13.0079 9.1591 2.7447 27 6 8.3891 4.8871 0.6088 28 1 8.0808 5.7566 0.0283 29 6 7.9072 5.0415 2.0528 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9564 -0.8900 37 1 3.7288 3.2893 0.8886 38 1 3.7281 3.2887 -0.8913 39 1 5.8991 4.6152 -0.0016 40 1 7.8780 2.5411 -1.8622 41 1 7.9477 4.3122 -2.0365 42 1 10.1360 2.5310 -0.8689 43 1 10.1716 3.3303 -2.4593 44 1 10.0433 5.5430 -1.3574 45 1 11.4497 4.6267 -0.7659 46 1 10.4280 6.8003 0.6611 47 1 9.9356 6.1013 2.2222 48 1 12.3113 7.3408 2.5111 49 1 16.5959 7.4760 3.9231 50 1 8.2345 6.0049 2.4439 51 1 6.8189 4.9890 2.0803 52 1 8.3253 4.2408 2.6628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717864356.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:55 Heat of formation + Delta-G solvation = -141.970409 kcal Electronic energy + Delta-G solvation = -30149.593257 eV Core-core repulsion = 25955.048788 eV Total energy + Delta-G solvation = -4194.544469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.43922 -40.50911 -39.45336 -38.57445 -36.16015 -35.65546 -34.58436 -34.38081 -33.68677 -32.28890 -29.62535 -28.81860 -27.65673 -26.47828 -26.19056 -23.99356 -22.49404 -22.48367 -21.61218 -21.23557 -20.86743 -20.13220 -18.35422 -17.98985 -17.63551 -17.46175 -16.95418 -16.76745 -16.48230 -16.22035 -16.08856 -15.56569 -15.44512 -15.29048 -15.14008 -14.83271 -14.66161 -14.51588 -14.36748 -14.09754 -13.78097 -13.53208 -13.22291 -13.05153 -13.02653 -12.99690 -12.88808 -12.85980 -12.61195 -12.39066 -12.07678 -11.98344 -11.88779 -11.82881 -11.79792 -11.77833 -11.44220 -11.33595 -10.84668 -10.65289 -10.35537 -10.20819 -10.08703 -9.16618 -8.38764 -5.99480 1.30885 1.37534 1.46016 1.59117 1.73014 2.00891 2.25232 2.61347 3.02463 3.16872 3.25147 3.58855 3.77314 3.78621 4.01344 4.03855 4.04757 4.12393 4.22891 4.25927 4.30062 4.32116 4.36689 4.40119 4.43171 4.45179 4.57123 4.59845 4.62015 4.66392 4.83254 4.83591 4.85266 4.94644 4.99115 5.07391 5.17496 5.22842 5.23903 5.28188 5.35551 5.37024 5.45486 5.56262 5.93092 6.05946 6.13055 6.24992 6.58996 6.63499 6.92258 7.27734 7.43845 8.02824 8.79248 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025995 B = 0.001833 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.860535 B =15270.412721 C =15774.574007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.057 3.943 4 O -0.405 6.405 5 C 0.048 3.952 6 C 0.508 3.492 7 O -0.577 6.577 8 N -0.702 5.702 9 C 0.161 3.839 10 H 0.057 0.943 11 C -0.118 4.118 12 C -0.108 4.108 13 C 0.060 3.940 14 N -0.537 5.537 15 C 0.053 3.947 16 C 0.451 3.549 17 O -0.607 6.607 18 N -0.593 5.593 19 C -0.327 4.327 20 H 0.052 0.948 21 C -0.017 4.017 22 N -0.938 5.938 23 Si 0.966 3.034 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.228 1.228 27 C 0.084 3.916 28 H 0.078 0.922 29 C -0.151 4.151 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.420 0.580 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.125 0.875 48 H 0.389 0.611 49 H 0.278 0.722 50 H 0.076 0.924 51 H 0.087 0.913 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.720 2.935 -8.463 36.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.019 4.019 4 O -0.325 6.325 5 C -0.031 4.031 6 C 0.295 3.705 7 O -0.455 6.455 8 N -0.356 5.356 9 C 0.055 3.945 10 H 0.076 0.924 11 C -0.157 4.157 12 C -0.147 4.147 13 C -0.068 4.068 14 N -0.263 5.263 15 C -0.077 4.077 16 C 0.238 3.762 17 O -0.491 6.491 18 N -0.236 5.236 19 C -0.456 4.456 20 H 0.070 0.930 21 C -0.215 4.215 22 N -0.579 5.579 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.151 1.151 27 C -0.024 4.024 28 H 0.095 0.905 29 C -0.209 4.209 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.258 0.742 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.143 0.857 48 H 0.225 0.775 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.105 0.895 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -34.636 0.879 -8.356 35.640 hybrid contribution 0.549 1.445 0.122 1.550 sum -34.087 2.324 -8.234 35.144 Atomic orbital electron populations 1.21663 0.92891 1.02787 1.02790 1.21498 0.97109 0.95588 1.02419 1.22807 0.78806 0.98423 1.01840 1.87982 1.21581 1.27100 1.95813 1.22342 0.88577 0.86613 1.05569 1.20985 0.90233 0.83986 0.75251 1.90748 1.75813 1.28879 1.50097 1.45633 1.05663 1.09316 1.75037 1.20687 0.79237 0.98246 0.96298 0.92446 1.21881 0.94926 1.02507 0.96388 1.21453 0.95334 0.97279 1.00611 1.22079 0.99708 0.97623 0.87365 1.61222 1.05246 1.43026 1.16796 1.21888 0.90881 0.93047 1.01927 1.20995 0.89259 0.84598 0.81304 1.90550 1.75834 1.26242 1.56438 1.42013 1.10197 1.17277 1.54075 1.18984 0.86782 1.03222 1.36612 0.93000 1.26130 0.95416 1.03458 0.96467 1.69814 1.08116 1.38240 1.41694 0.85351 0.79361 0.76527 0.80167 1.18191 1.20192 1.15135 1.21805 0.86143 0.96314 0.98185 0.90469 1.22010 1.02209 1.02458 0.94177 0.91609 0.91802 0.91693 0.92268 0.92381 0.91466 0.91359 0.87069 0.86943 0.74157 0.92749 0.89381 0.93867 0.89903 0.92864 0.92904 0.89808 0.85710 0.77515 0.91249 0.90486 0.89461 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.91 71.98 0.71 -0.33 16 2 C -0.13 -1.59 6.30 30.60 0.19 -1.39 16 3 C 0.06 0.64 5.94 71.98 0.43 1.07 16 4 O -0.41 -7.86 9.88 -129.94 -1.28 -9.15 16 5 C 0.05 0.58 6.42 71.24 0.46 1.03 16 6 C 0.51 10.42 7.87 87.66 0.69 11.11 16 7 O -0.58 -19.33 16.16 16.01 0.26 -19.07 16 8 N -0.70 -10.28 4.29 -442.27 -1.90 -12.17 16 9 C 0.16 3.53 2.05 45.04 0.09 3.63 16 10 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 11 C -0.12 -2.60 5.58 30.67 0.17 -2.43 16 12 C -0.11 -2.94 6.09 30.65 0.19 -2.75 16 13 C 0.06 1.77 5.11 86.33 0.44 2.21 16 14 N -0.54 -15.83 4.12 -875.66 -3.61 -19.44 16 15 C 0.05 1.58 5.26 85.56 0.45 2.03 16 16 C 0.45 20.37 7.47 87.66 0.65 21.02 16 17 O -0.61 -34.18 14.42 -3.09 -0.04 -34.23 16 18 N -0.59 -27.86 5.09 -306.98 -1.56 -29.42 16 19 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 20 H 0.05 3.68 7.39 -2.91 -0.02 3.65 16 21 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 22 N -0.94 -57.07 13.96 21.67 0.30 -56.77 16 23 Si 0.97 38.47 27.74 68.60 1.90 40.37 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 27 C 0.08 1.65 2.02 44.94 0.09 1.74 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 C -0.15 -2.61 8.52 71.98 0.61 -1.99 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.42 2.37 8.46 -92.71 -0.78 1.59 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.05 2.05 6.35 -2.39 -0.02 2.03 16 46 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 47 H 0.13 3.00 5.55 -2.39 -0.01 2.99 16 48 H 0.39 14.90 5.76 -92.71 -0.53 14.36 16 49 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 50 H 0.08 1.10 6.43 -2.39 -0.02 1.09 16 51 H 0.09 1.01 7.31 -2.39 -0.02 0.99 16 52 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -90.63 412.04 0.11 -90.52 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.46 Total: 33.31 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 6.50 Total: 16.07 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -6.76 Total: -117.81 kcal Atomic # 8 Polarization: -61.38 SS G_CDS: -1.07 Total: -62.45 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.90 Total: 40.37 kcal Total: -90.63 0.11 -90.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717864356.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.455 kcal (2) G-P(sol) polarization free energy of solvation -90.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds