Wall clock time and date at job start Wed Apr 1 2020 00:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47362 * 2 1 4 4 O 1.42896 * 109.47474 * 180.02562 * 3 2 1 5 5 C 1.42895 * 114.00365 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47014 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00360 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99849 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99843 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.53577 * 35.10124 * 9 8 6 11 11 C 1.53116 * 109.50361 * 274.99823 * 9 8 6 12 12 C 1.53122 * 109.21042 * 182.43997 * 11 9 8 13 13 C 1.53036 * 109.27960 * 57.62387 * 12 11 9 14 14 N 1.46848 * 109.52250 * 300.81531 * 13 12 11 15 15 C 1.46899 * 110.99916 * 185.83766 * 14 13 12 16 16 C 1.50700 * 109.46672 * 75.49941 * 15 14 13 17 17 O 1.21291 * 120.00331 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99781 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99767 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00020 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99609 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00280 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99686 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47463 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47067 * 120.00048 * 23 21 19 26 26 H 1.48508 * 109.46934 * 239.99966 * 23 21 19 27 27 C 1.46848 * 111.19271 * 61.74848 * 14 13 12 28 28 H 1.08992 * 109.47024 * 58.27212 * 27 14 13 29 29 C 1.53006 * 109.46076 * 178.25131 * 27 14 13 30 30 H 1.08991 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46754 * 300.00106 * 1 2 3 32 32 H 1.08998 * 109.47297 * 59.99652 * 1 2 3 33 33 H 1.09001 * 109.46754 * 239.99894 * 2 1 3 34 34 H 1.08998 * 109.47297 * 120.00348 * 2 1 3 35 35 H 1.09001 * 109.47273 * 60.00211 * 3 2 1 36 36 H 1.09003 * 109.47003 * 299.99948 * 3 2 1 37 37 H 1.08993 * 109.47311 * 60.00145 * 5 4 3 38 38 H 1.08997 * 109.47050 * 299.99580 * 5 4 3 39 39 H 0.97001 * 119.99493 * 359.97438 * 8 6 5 40 40 H 1.08991 * 109.51937 * 62.50329 * 11 9 8 41 41 H 1.09001 * 109.52196 * 302.37057 * 11 9 8 42 42 H 1.09000 * 109.50324 * 177.56781 * 12 11 9 43 43 H 1.08997 * 109.49985 * 297.68059 * 12 11 9 44 44 H 1.08993 * 109.46629 * 60.83831 * 13 12 11 45 45 H 1.08997 * 109.45842 * 180.80716 * 13 12 11 46 46 H 1.09001 * 109.46880 * 195.49523 * 15 14 13 47 47 H 1.08992 * 109.47578 * 315.50029 * 15 14 13 48 48 H 0.97001 * 120.00189 * 0.02562 * 18 16 15 49 49 H 0.97003 * 120.00521 * 179.97438 * 22 21 19 50 50 H 1.09006 * 109.47249 * 51.93791 * 29 27 14 51 51 H 1.09001 * 109.47345 * 171.93407 * 29 27 14 52 52 H 1.08994 * 109.46903 * 291.93398 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5526 2.6288 -0.0014 7 8 6.0742 1.5339 -0.0022 8 7 6.3167 3.7391 -0.0007 9 6 7.7771 3.6234 -0.0014 10 1 8.0738 2.7573 -0.5931 11 6 8.2773 3.4562 1.4360 12 6 9.8074 3.3971 1.4333 13 6 10.3611 4.6693 0.7876 14 7 9.8554 4.7823 -0.5864 15 6 10.4748 5.9173 -1.2836 16 6 11.8867 5.5594 -1.6701 17 8 12.3330 4.4663 -1.3925 18 7 12.6533 6.4538 -2.3251 19 6 13.9381 6.1284 -2.6762 20 1 14.3359 5.1557 -2.4276 21 6 14.7285 7.0506 -3.3511 22 7 14.2449 8.2348 -3.6523 23 14 16.4787 6.6071 -3.8301 24 1 16.7804 5.2249 -3.3786 25 1 16.6240 6.6892 -5.3057 26 1 17.4234 7.5549 -3.1862 27 6 8.3909 4.8883 -0.6061 28 1 8.0816 5.7555 -0.0228 29 6 7.9107 5.0475 -2.0501 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.7292 3.2882 0.8903 38 1 3.7284 3.2893 -0.8896 39 1 5.8995 4.6148 0.0004 40 1 7.8779 2.5330 1.8556 41 1 7.9467 4.3029 2.0376 42 1 10.1705 3.3215 2.4583 43 1 10.1369 2.5274 0.8649 44 1 10.0427 5.5376 1.3644 45 1 11.4500 4.6238 0.7712 46 1 9.9005 6.1499 -2.1804 47 1 10.4873 6.7854 -0.6248 48 1 12.2963 7.3279 -2.5475 49 1 14.7968 8.8787 -4.1231 50 1 8.3393 4.2560 -2.6650 51 1 6.8230 4.9826 -2.0806 52 1 8.2276 6.0174 -2.4334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717864357.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:59 Heat of formation + Delta-G solvation = -146.491036 kcal Electronic energy + Delta-G solvation = -30086.380010 eV Core-core repulsion = 25891.639513 eV Total energy + Delta-G solvation = -4194.740498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42174 -40.42456 -39.38475 -38.56734 -36.12511 -35.63446 -34.58271 -34.36607 -33.20242 -32.28344 -29.57790 -28.72731 -27.65977 -26.51087 -26.29429 -24.04043 -22.51311 -22.48601 -21.61751 -21.09642 -20.70872 -19.83138 -18.36473 -17.99786 -17.61538 -17.46321 -16.95445 -16.62491 -16.40872 -16.24534 -16.09874 -15.67572 -15.53288 -15.34462 -15.10614 -14.88049 -14.58928 -14.46543 -14.27214 -13.83326 -13.53660 -13.45059 -13.22733 -13.04993 -13.00955 -12.97527 -12.89113 -12.86155 -12.58438 -12.38625 -12.12424 -12.08418 -11.90032 -11.82791 -11.79790 -11.77667 -11.44719 -11.33262 -10.84276 -10.65331 -10.28760 -10.08689 -9.96741 -9.15697 -8.44451 -5.92293 1.36832 1.41848 1.55622 1.58888 1.73035 2.10641 2.30023 2.71511 3.05891 3.22547 3.42361 3.58529 3.77494 3.78471 4.01221 4.04813 4.07819 4.12529 4.23841 4.26394 4.31554 4.34009 4.38793 4.41651 4.43291 4.51827 4.57836 4.60194 4.63256 4.66434 4.82396 4.83755 4.85513 4.93126 4.98660 5.06937 5.17547 5.21777 5.24032 5.26894 5.35142 5.36543 5.42999 5.45645 5.92116 6.11177 6.13683 6.26202 6.58472 6.64948 7.17023 7.27005 7.61245 8.18452 8.73171 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027397 B = 0.001756 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.758900 B =15938.020545 C =16271.176012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.057 3.943 4 O -0.405 6.405 5 C 0.048 3.952 6 C 0.509 3.491 7 O -0.576 6.576 8 N -0.703 5.703 9 C 0.162 3.838 10 H 0.058 0.942 11 C -0.118 4.118 12 C -0.107 4.107 13 C 0.062 3.938 14 N -0.533 5.533 15 C 0.056 3.944 16 C 0.441 3.559 17 O -0.616 6.616 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.075 0.925 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.989 3.011 24 H -0.276 1.276 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.083 3.917 28 H 0.074 0.926 29 C -0.150 4.150 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.420 0.580 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.116 0.884 47 H 0.074 0.926 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.040 0.960 51 H 0.087 0.913 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.125 -1.997 9.278 30.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.019 4.019 4 O -0.324 6.324 5 C -0.031 4.031 6 C 0.296 3.704 7 O -0.454 6.454 8 N -0.357 5.357 9 C 0.056 3.944 10 H 0.076 0.924 11 C -0.157 4.157 12 C -0.146 4.146 13 C -0.066 4.066 14 N -0.259 5.259 15 C -0.075 4.075 16 C 0.229 3.771 17 O -0.502 6.502 18 N -0.215 5.215 19 C -0.460 4.460 20 H 0.093 0.907 21 C -0.211 4.211 22 N -0.562 5.562 23 Si 0.813 3.187 24 H -0.201 1.201 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.025 4.025 28 H 0.092 0.908 29 C -0.207 4.207 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.258 0.742 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.134 0.866 47 H 0.092 0.908 48 H 0.230 0.770 49 H 0.086 0.914 50 H 0.060 0.940 51 H 0.106 0.894 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -28.163 -3.946 9.112 29.862 hybrid contribution 0.832 1.247 -0.158 1.507 sum -27.331 -2.699 8.954 28.887 Atomic orbital electron populations 1.21663 0.92889 1.02795 1.02783 1.21495 0.97105 0.95545 1.02436 1.22809 0.78804 0.98462 1.01827 1.87976 1.21583 1.27054 1.95810 1.22333 0.88570 0.86632 1.05549 1.20980 0.90222 0.83962 0.75253 1.90743 1.75804 1.28810 1.50088 1.45648 1.05685 1.09342 1.75047 1.20676 0.79228 0.98056 0.96420 0.92368 1.21877 0.95047 1.02547 0.96235 1.21455 0.95240 0.97153 1.00715 1.22061 0.99538 0.97666 0.87305 1.61237 1.05073 1.42719 1.16890 1.21800 0.92164 0.92515 1.00986 1.20903 0.88868 0.85157 0.82195 1.90497 1.75551 1.24635 1.59489 1.41920 1.12369 1.15773 1.51394 1.19656 0.89803 1.01104 1.35433 0.90675 1.25953 1.03651 0.94859 0.96631 1.69665 1.39046 1.06256 1.41186 0.84924 0.77418 0.78120 0.78189 1.20104 1.19659 1.19553 1.21797 0.86406 0.96338 0.97961 0.90804 1.21996 1.02163 1.02190 0.94396 0.91771 0.91612 0.91717 0.92377 0.92224 0.91343 0.91527 0.86924 0.87151 0.74225 0.92547 0.89477 0.89652 0.93663 0.93093 0.92998 0.86623 0.90834 0.77027 0.91390 0.94048 0.89391 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.91 71.98 0.71 -0.39 16 2 C -0.13 -1.63 6.30 30.60 0.19 -1.44 16 3 C 0.06 0.67 5.94 71.98 0.43 1.10 16 4 O -0.40 -8.10 9.88 -129.94 -1.28 -9.38 16 5 C 0.05 0.62 6.42 71.24 0.46 1.08 16 6 C 0.51 10.90 7.87 87.66 0.69 11.59 16 7 O -0.58 -19.66 16.17 16.01 0.26 -19.40 16 8 N -0.70 -11.24 4.28 -442.25 -1.89 -13.14 16 9 C 0.16 3.78 2.05 45.05 0.09 3.87 16 10 H 0.06 1.90 7.58 -2.38 -0.02 1.88 16 11 C -0.12 -2.70 5.57 30.67 0.17 -2.52 16 12 C -0.11 -2.94 6.09 30.65 0.19 -2.75 16 13 C 0.06 1.90 5.11 86.33 0.44 2.34 16 14 N -0.53 -16.92 4.06 -875.64 -3.55 -20.47 16 15 C 0.06 1.89 5.31 85.56 0.45 2.34 16 16 C 0.44 21.16 7.49 87.66 0.66 21.81 16 17 O -0.62 -34.92 14.73 -3.06 -0.05 -34.96 16 18 N -0.58 -29.64 5.29 -306.98 -1.62 -31.26 16 19 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 20 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -49.59 13.05 21.66 0.28 -49.30 16 23 Si 0.99 43.52 29.55 68.60 2.03 45.54 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 C 0.08 1.85 2.02 44.94 0.09 1.94 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 C -0.15 -3.06 8.53 71.98 0.61 -2.45 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.42 3.06 8.46 -92.71 -0.78 2.28 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 2.02 6.69 -2.39 -0.02 2.00 16 46 H 0.12 3.39 5.43 -2.39 -0.01 3.38 16 47 H 0.07 2.14 8.00 -2.39 -0.02 2.12 16 48 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 49 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 50 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 51 H 0.09 1.25 7.29 -2.39 -0.02 1.23 16 52 H 0.07 1.34 6.40 -2.39 -0.02 1.32 16 Total: -1.00 -81.56 415.63 0.04 -81.52 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.60 Total: 32.64 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 6.47 Total: 18.22 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -6.79 Total: -114.17 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: -1.07 Total: -63.74 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -81.56 0.04 -81.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717864357.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.975 kcal (2) G-P(sol) polarization free energy of solvation -81.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds