Wall clock time and date at job start Wed Apr 1 2020 00:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47244 * 2 1 4 4 O 1.42905 * 109.47053 * 180.02562 * 3 2 1 5 5 C 1.42904 * 113.99943 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46924 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99783 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99698 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99738 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.53709 * 325.09789 * 9 8 6 11 11 C 1.53115 * 109.50032 * 85.19922 * 9 8 6 12 12 C 1.53120 * 109.16374 * 62.28779 * 11 9 8 13 13 C 1.53039 * 109.28086 * 57.65186 * 12 11 9 14 14 N 1.46855 * 109.52214 * 300.82630 * 13 12 11 15 15 C 1.46903 * 111.00064 * 185.83794 * 14 13 12 16 16 C 1.50697 * 109.46790 * 301.25337 * 15 14 13 17 17 O 1.21294 * 120.00131 * 354.37738 * 16 15 14 18 18 N 1.34782 * 119.99637 * 174.38801 * 16 15 14 19 19 C 1.37100 * 119.99803 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99700 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99696 * 179.97438 * 19 18 16 22 22 N 1.31401 * 120.00170 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99680 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47029 * 60.00169 * 23 21 19 25 25 H 1.48500 * 109.47121 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47009 * 300.00194 * 23 21 19 27 27 C 1.46848 * 111.19932 * 61.73645 * 14 13 12 28 28 H 1.09006 * 109.45666 * 58.26671 * 27 14 13 29 29 C 1.52997 * 109.45979 * 178.24255 * 27 14 13 30 30 H 1.08999 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47410 * 300.00424 * 1 2 3 32 32 H 1.09008 * 109.46948 * 60.00234 * 1 2 3 33 33 H 1.09002 * 109.47000 * 239.99492 * 2 1 3 34 34 H 1.09002 * 109.46873 * 120.00466 * 2 1 3 35 35 H 1.09002 * 109.47537 * 59.99820 * 3 2 1 36 36 H 1.08996 * 109.47200 * 299.99433 * 3 2 1 37 37 H 1.08999 * 109.47034 * 59.99935 * 5 4 3 38 38 H 1.08998 * 109.46831 * 299.99362 * 5 4 3 39 39 H 0.97003 * 120.00106 * 0.02562 * 8 6 5 40 40 H 1.09000 * 109.52703 * 302.38173 * 11 9 8 41 41 H 1.09000 * 109.52204 * 182.18660 * 11 9 8 42 42 H 1.09001 * 109.50382 * 297.71014 * 12 11 9 43 43 H 1.08997 * 109.54123 * 177.61554 * 12 11 9 44 44 H 1.08994 * 109.46844 * 180.80804 * 13 12 11 45 45 H 1.09001 * 109.46611 * 60.83551 * 13 12 11 46 46 H 1.09000 * 109.46519 * 61.24768 * 15 14 13 47 47 H 1.08995 * 109.46946 * 181.24915 * 15 14 13 48 48 H 0.96995 * 119.99937 * 359.97438 * 18 16 15 49 49 H 0.97008 * 120.00057 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.47398 * 53.63286 * 29 27 14 51 51 H 1.09006 * 109.46698 * 173.63237 * 29 27 14 52 52 H 1.09006 * 109.47403 * 293.63184 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7478 -0.0001 6 6 5.5527 2.6287 -0.0001 7 8 6.0741 1.5338 -0.0011 8 7 6.3166 3.7390 -0.0002 9 6 7.7770 3.6233 0.0003 10 1 8.0736 2.7548 0.5884 11 6 8.2775 3.4621 -1.4378 12 6 7.9091 4.7124 -2.2413 13 6 8.5177 5.9440 -1.5668 14 7 8.0074 6.0543 -0.1942 15 6 8.4618 7.3001 0.4379 16 6 9.9683 7.3360 0.4514 17 8 10.6013 6.3724 0.0748 18 7 10.6121 8.4390 0.8821 19 6 11.9827 8.4715 0.8949 20 1 12.5463 7.6132 0.5602 21 6 12.6465 9.6087 1.3385 22 7 11.9607 10.6528 1.7462 23 14 14.5139 9.6533 1.3553 24 1 15.0262 9.4540 -0.0243 25 1 14.9731 10.9687 1.8692 26 1 15.0270 8.5724 2.2348 27 6 8.3894 4.8864 0.6098 28 1 9.4755 4.7937 0.6223 29 6 7.8763 5.0625 2.0404 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9562 -0.8900 37 1 3.7291 3.2882 0.8904 38 1 3.7284 3.2892 -0.8896 39 1 5.8994 4.6148 0.0002 40 1 7.8101 2.5875 -1.8903 41 1 9.3603 3.3370 -1.4348 42 1 6.8246 4.8157 -2.2770 43 1 8.2995 4.6224 -3.2550 44 1 8.2454 6.8375 -2.1284 45 1 9.6031 5.8464 -1.5439 46 1 8.0831 8.1526 -0.1260 47 1 8.0880 7.3459 1.4607 48 1 10.1059 9.2096 1.1831 49 1 12.4241 11.4469 2.0555 50 1 6.8062 5.2685 2.0198 51 1 8.0598 4.1497 2.6071 52 1 8.3975 5.8949 2.5135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717864358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:03 Heat of formation + Delta-G solvation = -144.910611 kcal Electronic energy + Delta-G solvation = -30861.033620 eV Core-core repulsion = 26666.361654 eV Total energy + Delta-G solvation = -4194.671965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.64980 -40.53008 -39.18610 -38.40771 -36.13238 -35.25699 -34.55276 -34.12809 -33.28140 -32.38488 -29.46692 -28.73074 -27.63455 -26.48665 -26.25806 -23.94798 -22.67321 -22.48551 -21.82929 -21.02151 -20.33165 -19.66056 -18.36231 -17.90119 -17.50995 -17.45381 -16.96168 -16.59541 -16.39196 -16.19188 -16.12683 -15.69145 -15.60572 -15.37662 -15.13702 -14.85253 -14.47061 -14.30292 -14.24466 -13.75098 -13.52785 -13.22927 -13.07613 -13.01676 -12.99603 -12.93481 -12.86185 -12.85521 -12.53672 -12.44825 -12.25859 -12.12341 -11.80345 -11.79103 -11.76049 -11.54385 -11.35352 -11.18424 -10.94747 -10.77083 -10.62806 -9.98534 -9.97784 -9.01422 -8.45999 -5.95263 1.36664 1.39827 1.49613 1.66166 1.89427 2.04362 2.28252 2.90679 3.09866 3.20568 3.28653 3.69247 3.84504 3.87304 4.02095 4.06493 4.14853 4.16738 4.29493 4.35211 4.38488 4.42254 4.45239 4.49258 4.59601 4.60439 4.65331 4.67930 4.72074 4.75015 4.81956 4.87574 4.92935 5.04781 5.07067 5.12901 5.18471 5.20899 5.25643 5.29787 5.37669 5.38439 5.43648 5.59212 5.91458 6.06841 6.11274 6.16730 6.59795 6.70807 7.12739 7.34459 7.57170 8.12434 8.68898 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.001963 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.250459 B =14260.012789 C =14510.885362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.056 3.944 4 O -0.402 6.402 5 C 0.048 3.952 6 C 0.508 3.492 7 O -0.580 6.580 8 N -0.691 5.691 9 C 0.170 3.830 10 H 0.069 0.931 11 C -0.128 4.128 12 C -0.098 4.098 13 C 0.036 3.964 14 N -0.486 5.486 15 C 0.046 3.954 16 C 0.409 3.591 17 O -0.622 6.622 18 N -0.570 5.570 19 C -0.333 4.333 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.917 5.917 23 Si 0.987 3.013 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.275 1.275 27 C 0.063 3.937 28 H 0.053 0.947 29 C -0.138 4.138 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.420 0.580 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.036 0.964 46 H 0.112 0.888 47 H 0.116 0.884 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.084 0.916 51 H 0.057 0.943 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.092 -9.781 -3.192 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.020 4.020 4 O -0.321 6.321 5 C -0.031 4.031 6 C 0.295 3.705 7 O -0.460 6.460 8 N -0.345 5.345 9 C 0.065 3.935 10 H 0.087 0.913 11 C -0.167 4.167 12 C -0.135 4.135 13 C -0.092 4.092 14 N -0.209 5.209 15 C -0.086 4.086 16 C 0.196 3.804 17 O -0.510 6.510 18 N -0.207 5.207 19 C -0.463 4.463 20 H 0.094 0.906 21 C -0.210 4.210 22 N -0.557 5.557 23 Si 0.811 3.189 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.200 1.200 27 C -0.046 4.046 28 H 0.071 0.929 29 C -0.196 4.196 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.258 0.742 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.054 0.946 46 H 0.130 0.870 47 H 0.134 0.866 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.103 0.897 51 H 0.076 0.924 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.671 -11.148 -3.387 25.490 hybrid contribution 1.974 1.057 0.266 2.255 sum -20.698 -10.090 -3.121 23.237 Atomic orbital electron populations 1.21665 0.92926 1.02811 1.02744 1.21484 0.97067 0.95392 1.02489 1.22813 0.78932 0.98552 1.01722 1.87968 1.21471 1.26916 1.95789 1.22304 0.89035 0.86543 1.05231 1.20906 0.90088 0.84033 0.75491 1.90701 1.75790 1.28595 1.50897 1.45683 1.05706 1.09191 1.73907 1.20724 0.80157 0.96650 0.95991 0.91326 1.21888 1.00327 0.98720 0.95766 1.21430 1.01670 0.92349 0.98081 1.22317 0.98818 0.98998 0.89024 1.62529 1.55905 1.00503 1.01999 1.22234 0.88203 0.94887 1.03239 1.22188 0.92464 0.83276 0.82464 1.90428 1.69955 1.36638 1.53968 1.42114 1.06573 1.15226 1.56759 1.19575 0.83165 1.01107 1.42443 0.90610 1.25947 1.04488 0.94468 0.96080 1.69649 1.37953 1.04879 1.43257 0.85077 0.77470 0.77713 0.78606 1.19926 1.19497 1.20009 1.21977 0.99009 0.89843 0.93816 0.92912 1.21819 1.02493 1.01495 0.93785 0.91660 0.91735 0.91726 0.92199 0.92217 0.91595 0.91592 0.87450 0.87449 0.74206 0.92038 0.92810 0.89958 0.91117 0.90542 0.94569 0.86963 0.86615 0.77019 0.91336 0.89678 0.92438 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.91 71.98 0.71 -0.51 16 2 C -0.13 -1.72 6.30 30.59 0.19 -1.53 16 3 C 0.06 0.75 5.94 71.98 0.43 1.18 16 4 O -0.40 -8.72 9.88 -129.94 -1.28 -10.00 16 5 C 0.05 0.76 6.42 71.24 0.46 1.22 16 6 C 0.51 12.22 7.87 87.66 0.69 12.91 16 7 O -0.58 -20.24 16.16 16.01 0.26 -19.98 16 8 N -0.69 -14.41 3.80 -442.29 -1.68 -16.09 16 9 C 0.17 4.62 2.26 45.04 0.10 4.72 16 10 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 11 C -0.13 -3.55 5.67 30.67 0.17 -3.38 16 12 C -0.10 -2.37 5.93 30.65 0.18 -2.19 16 13 C 0.04 1.07 4.99 86.32 0.43 1.50 16 14 N -0.49 -13.21 4.17 -875.64 -3.65 -16.87 16 15 C 0.05 1.38 5.47 85.56 0.47 1.85 16 16 C 0.41 17.73 7.18 87.66 0.63 18.36 16 17 O -0.62 -31.22 11.22 -3.07 -0.03 -31.26 16 18 N -0.57 -27.69 5.29 -306.98 -1.62 -29.32 16 19 C -0.33 -18.33 9.68 84.04 0.81 -17.52 16 20 H 0.08 4.48 7.16 -2.91 -0.02 4.46 16 21 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 22 N -0.92 -48.24 13.05 21.66 0.28 -47.96 16 23 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 27 C 0.06 1.84 1.77 44.94 0.08 1.92 16 28 H 0.05 2.08 5.76 -2.38 -0.01 2.07 16 29 C -0.14 -3.48 8.28 71.98 0.60 -2.89 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.42 6.69 7.94 -92.71 -0.74 5.95 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 1.68 7.73 -2.39 -0.02 1.66 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 45 H 0.04 1.41 5.61 -2.39 -0.01 1.40 16 46 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 47 H 0.12 3.06 6.04 -2.39 -0.01 3.05 16 48 H 0.40 18.32 7.90 -92.71 -0.73 17.59 16 49 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 50 H 0.08 1.67 7.61 -2.39 -0.02 1.65 16 51 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 52 H 0.05 1.33 6.60 -2.38 -0.02 1.31 16 Total: -1.00 -71.72 407.94 0.18 -71.54 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -0.54 Total: 39.90 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.42 Total: 15.60 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -6.67 Total: -110.23 kcal Atomic # 8 Polarization: -60.18 SS G_CDS: -1.06 Total: -61.24 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -71.72 0.18 -71.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717864358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.370 kcal (2) G-P(sol) polarization free energy of solvation -71.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds