Wall clock time and date at job start Wed Apr 1 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.52120 * 2 1 4 4 C 1.53095 * 109.52030 * 239.87073 * 2 1 3 5 5 O 1.42905 * 109.41158 * 182.42213 * 4 2 1 6 6 C 1.42899 * 114.09578 * 61.16176 * 5 4 2 7 7 C 1.53089 * 109.41760 * 298.83894 * 6 5 4 8 8 C 1.53174 * 109.56920 * 120.15740 * 2 1 3 9 9 H 1.08999 * 109.54581 * 296.78015 * 8 2 1 10 10 C 1.50700 * 109.54939 * 57.05092 * 8 2 1 11 11 O 1.21284 * 119.99287 * 7.02954 * 10 8 2 12 12 N 1.34772 * 120.00377 * 187.03160 * 10 8 2 13 13 C 1.46498 * 119.99853 * 6.30631 * 12 10 8 14 14 C 1.46491 * 120.00035 * 186.30520 * 12 10 8 15 15 C 1.53005 * 109.47400 * 90.00010 * 14 12 10 16 16 C 1.53001 * 109.47598 * 179.97438 * 15 14 12 17 17 N 1.46896 * 109.47007 * 179.97438 * 16 15 14 18 18 C 1.46900 * 110.99777 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47264 * 179.97438 * 18 17 16 20 20 O 1.21296 * 120.00123 * 0.02562 * 19 18 17 21 21 N 1.34783 * 120.00097 * 179.97438 * 19 18 17 22 22 C 1.37089 * 119.99639 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.01023 * 0.02562 * 22 21 19 24 24 C 1.38959 * 119.99655 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99891 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99920 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47157 * 59.99970 * 26 24 22 28 28 H 1.48501 * 109.46821 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46822 * 300.00090 * 26 24 22 30 30 H 1.08995 * 109.47632 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47336 * 300.00318 * 1 2 3 32 32 H 1.09007 * 109.47476 * 59.99866 * 1 2 3 33 33 H 1.08994 * 109.48204 * 302.40636 * 4 2 1 34 34 H 1.09000 * 109.48010 * 62.44121 * 4 2 1 35 35 H 1.09006 * 109.47922 * 58.82184 * 6 5 4 36 36 H 1.08998 * 109.47737 * 178.84271 * 6 5 4 37 37 H 1.08998 * 109.52633 * 177.51400 * 7 6 5 38 38 H 1.09002 * 109.52198 * 297.70778 * 7 6 5 39 39 H 1.08997 * 109.47253 * 84.43789 * 13 12 10 40 40 H 1.09006 * 109.47050 * 204.44455 * 13 12 10 41 41 H 1.09003 * 109.47252 * 324.43946 * 13 12 10 42 42 H 1.08998 * 109.47270 * 209.99402 * 14 12 10 43 43 H 1.08999 * 109.47465 * 329.99967 * 14 12 10 44 44 H 1.08998 * 109.47114 * 300.00175 * 15 14 12 45 45 H 1.08999 * 109.46846 * 59.99578 * 15 14 12 46 46 H 1.08994 * 109.46740 * 300.00253 * 16 15 14 47 47 H 1.09004 * 109.46504 * 60.00176 * 16 15 14 48 48 H 1.00902 * 111.00080 * 303.95495 * 17 16 15 49 49 H 1.09007 * 109.47207 * 299.99939 * 18 17 16 50 50 H 1.08998 * 109.47108 * 59.99967 * 18 17 16 51 51 H 0.96998 * 120.00009 * 0.02562 * 21 19 18 52 52 H 0.96995 * 119.99872 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2480 5 8 3.4695 -0.7724 -1.2174 6 6 4.0055 -1.4794 -0.0972 7 6 3.5729 -0.7856 1.1970 8 6 2.0431 -0.7251 1.2479 9 1 1.7291 -0.1827 2.1397 10 6 1.4842 -2.1241 1.2838 11 8 0.8531 -2.5493 0.3393 12 7 1.6855 -2.9028 2.3652 13 6 2.3261 -2.3463 3.5594 14 6 1.2638 -4.3056 2.3465 15 6 2.4091 -5.1756 1.8247 16 6 1.9690 -6.6408 1.8057 17 7 3.0684 -7.4759 1.3041 18 6 2.6808 -8.8925 1.2714 19 6 3.8310 -9.7162 0.7521 20 8 4.8715 -9.1763 0.4404 21 7 3.7038 -11.0529 0.6350 22 6 4.7504 -11.8021 0.1631 23 1 5.6769 -11.3215 -0.1145 24 6 4.6195 -13.1803 0.0428 25 7 3.4924 -13.7652 0.3810 26 14 6.0458 -14.2014 -0.5996 27 1 7.2196 -14.0291 0.2934 28 1 5.6540 -15.6335 -0.6323 29 1 6.3971 -13.7533 -1.9711 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6440 -1.7389 -1.2680 34 1 1.7149 -0.1881 -2.1390 35 1 3.6336 -2.5041 -0.1023 36 1 5.0937 -1.4874 -0.1594 37 1 3.9438 -1.3483 2.0536 38 1 3.9784 0.2259 1.2211 39 1 1.5768 -1.8495 4.1756 40 1 2.7912 -3.1501 4.1302 41 1 3.0872 -1.6253 3.2610 42 1 1.0005 -4.6193 3.3566 43 1 0.3975 -4.4159 1.6943 44 1 2.6726 -4.8619 0.8146 45 1 3.2755 -5.0653 2.4769 46 1 1.7058 -6.9541 2.8160 47 1 1.1025 -6.7514 1.1537 48 1 3.3737 -7.1637 0.3945 49 1 2.4228 -9.2220 2.2779 50 1 1.8192 -9.0183 0.6158 51 1 2.8719 -11.4846 0.8846 52 1 3.4009 -14.7272 0.2967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723116425.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:44 Heat of formation + Delta-G solvation = -117.053904 kcal Electronic energy + Delta-G solvation = -30373.606868 eV Core-core repulsion = 26180.142860 eV Total energy + Delta-G solvation = -4193.464008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.35880 -38.69388 -38.26582 -36.68824 -35.56978 -34.67321 -33.87298 -32.75951 -31.58257 -31.13320 -27.85505 -27.48626 -26.77516 -25.80446 -24.66147 -23.38708 -22.74438 -21.80766 -21.05657 -19.21371 -19.09234 -17.86785 -17.37337 -16.62054 -16.45182 -16.23541 -16.12230 -15.81830 -15.66329 -14.87417 -14.82880 -14.53995 -14.46921 -14.19722 -14.04657 -13.79223 -13.50568 -13.40878 -13.15921 -13.00686 -12.78066 -12.62752 -12.44042 -12.27882 -12.02252 -11.93620 -11.74372 -11.66407 -11.46860 -11.40584 -11.27189 -11.02033 -10.97492 -10.79224 -10.76006 -10.43150 -10.20080 -9.95296 -9.48720 -9.42355 -8.98695 -8.44826 -8.04632 -7.94467 -6.40271 -3.81057 2.24298 2.61811 3.21367 3.26736 3.31397 3.64792 3.92506 4.00077 4.11655 4.18594 4.29005 4.35726 4.53531 4.58845 4.65555 4.80674 4.90536 4.92721 5.06274 5.08334 5.13181 5.14815 5.19297 5.23212 5.26185 5.27188 5.34643 5.35315 5.42989 5.51955 5.52739 5.57642 5.64785 5.66901 5.78200 5.81132 5.86959 5.96972 5.99609 6.04297 6.13884 6.25827 6.29158 6.98146 7.00891 7.23589 7.56381 7.67009 7.84712 8.07617 8.62933 9.19189 9.55788 10.07470 10.77434 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.001802 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.210242 B =15531.825802 C =16068.203974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 H 0.081 0.919 4 C 0.049 3.951 5 O -0.383 6.383 6 C 0.058 3.942 7 C -0.153 4.153 8 C -0.107 4.107 9 H 0.097 0.903 10 C 0.520 3.480 11 O -0.527 6.527 12 N -0.614 5.614 13 C 0.064 3.936 14 C 0.114 3.886 15 C -0.130 4.130 16 C 0.063 3.937 17 N -0.669 5.669 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.584 6.584 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.028 0.972 48 H 0.349 0.651 49 H 0.086 0.914 50 H 0.043 0.957 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.883 28.370 6.822 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.122 4.122 3 H 0.099 0.901 4 C -0.027 4.027 5 O -0.302 6.302 6 C -0.019 4.019 7 C -0.191 4.191 8 C -0.129 4.129 9 H 0.115 0.885 10 C 0.308 3.692 11 O -0.404 6.404 12 N -0.347 5.347 13 C -0.078 4.078 14 C -0.008 4.008 15 C -0.169 4.169 16 C -0.068 4.068 17 N -0.302 5.302 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.046 0.954 48 H 0.168 0.832 49 H 0.104 0.896 50 H 0.061 0.939 51 H 0.226 0.774 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.153 28.317 6.584 29.940 hybrid contribution -0.613 -0.973 -0.395 1.215 sum -7.765 27.345 6.189 29.092 Atomic orbital electron populations 1.21990 0.93977 1.04271 1.01341 1.21542 0.96977 0.99373 0.94311 0.90106 1.23008 0.80453 1.02387 0.96853 1.87914 1.20867 1.76143 1.45234 1.22564 0.99364 0.94831 0.85105 1.22393 0.93418 1.03351 0.99933 1.21461 0.96710 0.93705 1.00975 0.88477 1.20599 0.79368 0.87269 0.81951 1.90591 1.39964 1.74711 1.35182 1.47860 1.60710 1.11287 1.14848 1.22106 0.98014 1.00365 0.87354 1.21491 0.97938 0.79144 1.02264 1.21887 0.98656 0.94060 1.02324 1.21847 0.92466 0.92118 1.00336 1.60079 1.35321 1.01224 1.33561 1.21669 0.96275 0.88904 1.01357 1.19823 0.89445 0.83124 0.85013 1.90520 1.30052 1.71463 1.54741 1.41857 1.15951 1.04994 1.57246 1.19658 0.95040 0.88783 1.39443 0.87979 1.25272 0.97986 0.97063 0.97672 1.69604 1.25090 1.11364 1.48303 0.85908 0.80690 0.78112 0.79449 1.19883 1.20986 1.19910 0.89847 0.93137 0.92538 0.89799 0.89336 0.93047 0.88481 0.89537 0.89704 0.92461 0.90294 0.90271 0.90333 0.89666 0.91763 0.90798 0.91071 0.95403 0.83173 0.89620 0.93878 0.77449 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 8.87 37.16 0.33 -0.93 16 2 C -0.10 -0.83 2.67 -90.48 -0.24 -1.07 16 3 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.05 0.50 5.86 37.21 0.22 0.72 16 5 O -0.38 -4.35 10.77 -35.23 -0.38 -4.73 16 6 C 0.06 0.54 6.62 37.20 0.25 0.79 16 7 C -0.15 -1.01 5.29 -26.59 -0.14 -1.15 16 8 C -0.11 -0.78 1.79 -91.58 -0.16 -0.94 16 9 H 0.10 0.52 7.75 -51.93 -0.40 0.12 16 10 C 0.52 4.93 5.30 -10.99 -0.06 4.88 16 11 O -0.53 -6.63 10.97 5.55 0.06 -6.57 16 12 N -0.61 -4.90 2.87 -181.58 -0.52 -5.42 16 13 C 0.06 0.31 9.85 59.85 0.59 0.90 16 14 C 0.11 1.00 5.43 -4.04 -0.02 0.98 16 15 C -0.13 -1.39 5.80 -26.73 -0.15 -1.54 16 16 C 0.06 0.77 5.69 -3.83 -0.02 0.75 16 17 N -0.67 -11.12 6.13 -115.06 -0.70 -11.83 16 18 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 19 C 0.44 10.65 7.82 -10.98 -0.09 10.56 16 20 O -0.58 -16.21 15.78 5.54 0.09 -16.12 16 21 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 22 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 23 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 24 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 25 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 26 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 30 H 0.08 0.85 5.54 -51.93 -0.29 0.56 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 1.03 5.56 -51.93 -0.29 0.74 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.56 7.38 -51.93 -0.38 0.18 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.45 5.38 -51.93 -0.28 0.17 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.34 8.03 -51.93 -0.42 -0.08 16 41 H 0.08 0.30 4.28 -51.93 -0.22 0.07 16 42 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 43 H 0.08 0.87 7.35 -51.93 -0.38 0.49 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.35 6.13 8.43 -39.29 -0.33 5.80 16 49 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 50 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 52 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 405.01 15.07 6.10 6.10 Total: -1.00 -33.74 405.01 -8.23 -41.97 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -8.74 Total: 12.32 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 0.22 Total: 6.68 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.56 Total: -55.92 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.23 Total: -27.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.74 -8.23 -41.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723116425.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.081 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds