Wall clock time and date at job start Wed Apr 1 2020 01:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.52120 * 2 1 4 4 C 1.53095 * 109.52030 * 239.87073 * 2 1 3 5 5 O 1.42905 * 109.41158 * 182.42213 * 4 2 1 6 6 C 1.42899 * 114.09578 * 61.16176 * 5 4 2 7 7 C 1.53089 * 109.41760 * 298.83894 * 6 5 4 8 8 C 1.53174 * 109.56920 * 120.15740 * 2 1 3 9 9 H 1.08999 * 109.54581 * 296.78015 * 8 2 1 10 10 C 1.50700 * 109.54939 * 57.05092 * 8 2 1 11 11 O 1.21284 * 119.99287 * 7.02954 * 10 8 2 12 12 N 1.34772 * 120.00377 * 187.03160 * 10 8 2 13 13 C 1.46498 * 119.99853 * 6.30631 * 12 10 8 14 14 C 1.46491 * 120.00035 * 186.30520 * 12 10 8 15 15 C 1.53005 * 109.47400 * 90.00010 * 14 12 10 16 16 C 1.53001 * 109.47598 * 179.97438 * 15 14 12 17 17 N 1.46896 * 109.47007 * 179.97438 * 16 15 14 18 18 C 1.46900 * 110.99777 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47264 * 179.97438 * 18 17 16 20 20 O 1.21296 * 120.00123 * 0.02562 * 19 18 17 21 21 N 1.34783 * 120.00097 * 179.97438 * 19 18 17 22 22 C 1.37089 * 119.99639 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.01023 * 0.02562 * 22 21 19 24 24 C 1.38959 * 119.99655 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99891 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99920 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47157 * 59.99970 * 26 24 22 28 28 H 1.48501 * 109.46821 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46822 * 300.00090 * 26 24 22 30 30 H 1.08995 * 109.47632 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47336 * 300.00318 * 1 2 3 32 32 H 1.09007 * 109.47476 * 59.99866 * 1 2 3 33 33 H 1.08994 * 109.48204 * 302.40636 * 4 2 1 34 34 H 1.09000 * 109.48010 * 62.44121 * 4 2 1 35 35 H 1.09006 * 109.47922 * 58.82184 * 6 5 4 36 36 H 1.08998 * 109.47737 * 178.84271 * 6 5 4 37 37 H 1.08998 * 109.52633 * 177.51400 * 7 6 5 38 38 H 1.09002 * 109.52198 * 297.70778 * 7 6 5 39 39 H 1.08997 * 109.47253 * 84.43789 * 13 12 10 40 40 H 1.09006 * 109.47050 * 204.44455 * 13 12 10 41 41 H 1.09003 * 109.47252 * 324.43946 * 13 12 10 42 42 H 1.08998 * 109.47270 * 209.99402 * 14 12 10 43 43 H 1.08999 * 109.47465 * 329.99967 * 14 12 10 44 44 H 1.08998 * 109.47114 * 300.00175 * 15 14 12 45 45 H 1.08999 * 109.46846 * 59.99578 * 15 14 12 46 46 H 1.08994 * 109.46740 * 300.00253 * 16 15 14 47 47 H 1.09004 * 109.46504 * 60.00176 * 16 15 14 48 48 H 1.00902 * 111.00080 * 303.95495 * 17 16 15 49 49 H 1.09007 * 109.47207 * 299.99939 * 18 17 16 50 50 H 1.08998 * 109.47108 * 59.99967 * 18 17 16 51 51 H 0.96998 * 120.00009 * 0.02562 * 21 19 18 52 52 H 0.96995 * 119.99872 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2480 5 8 3.4695 -0.7724 -1.2174 6 6 4.0055 -1.4794 -0.0972 7 6 3.5729 -0.7856 1.1970 8 6 2.0431 -0.7251 1.2479 9 1 1.7291 -0.1827 2.1397 10 6 1.4842 -2.1241 1.2838 11 8 0.8531 -2.5493 0.3393 12 7 1.6855 -2.9028 2.3652 13 6 2.3261 -2.3463 3.5594 14 6 1.2638 -4.3056 2.3465 15 6 2.4091 -5.1756 1.8247 16 6 1.9690 -6.6408 1.8057 17 7 3.0684 -7.4759 1.3041 18 6 2.6808 -8.8925 1.2714 19 6 3.8310 -9.7162 0.7521 20 8 4.8715 -9.1763 0.4404 21 7 3.7038 -11.0529 0.6350 22 6 4.7504 -11.8021 0.1631 23 1 5.6769 -11.3215 -0.1145 24 6 4.6195 -13.1803 0.0428 25 7 3.4924 -13.7652 0.3810 26 14 6.0458 -14.2014 -0.5996 27 1 7.2196 -14.0291 0.2934 28 1 5.6540 -15.6335 -0.6323 29 1 6.3971 -13.7533 -1.9711 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6440 -1.7389 -1.2680 34 1 1.7149 -0.1881 -2.1390 35 1 3.6336 -2.5041 -0.1023 36 1 5.0937 -1.4874 -0.1594 37 1 3.9438 -1.3483 2.0536 38 1 3.9784 0.2259 1.2211 39 1 1.5768 -1.8495 4.1756 40 1 2.7912 -3.1501 4.1302 41 1 3.0872 -1.6253 3.2610 42 1 1.0005 -4.6193 3.3566 43 1 0.3975 -4.4159 1.6943 44 1 2.6726 -4.8619 0.8146 45 1 3.2755 -5.0653 2.4769 46 1 1.7058 -6.9541 2.8160 47 1 1.1025 -6.7514 1.1537 48 1 3.3737 -7.1637 0.3945 49 1 2.4228 -9.2220 2.2779 50 1 1.8192 -9.0183 0.6158 51 1 2.8719 -11.4846 0.8846 52 1 3.4009 -14.7272 0.2967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723116425.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:43 Heat of formation + Delta-G solvation = -142.314881 kcal Electronic energy + Delta-G solvation = -30374.702266 eV Core-core repulsion = 26180.142860 eV Total energy + Delta-G solvation = -4194.559406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03013 -40.19016 -39.39773 -37.66294 -36.61295 -35.88660 -35.37726 -33.57093 -33.26607 -32.40068 -28.98250 -28.07760 -27.64135 -26.91882 -25.98407 -24.62436 -23.36953 -22.75797 -21.81287 -21.06565 -19.92667 -19.74488 -18.09948 -17.81127 -17.29550 -17.21984 -17.06925 -16.79266 -16.63736 -16.48862 -15.99081 -15.73185 -15.53970 -15.32019 -15.22402 -14.85762 -14.58410 -14.39043 -14.14004 -13.86791 -13.56079 -13.50540 -13.37623 -13.31247 -13.08021 -13.01839 -12.99938 -12.79058 -12.56677 -12.45801 -12.42805 -12.39469 -12.12957 -11.92228 -11.70562 -11.60920 -11.52135 -11.49507 -10.65285 -10.38948 -10.16643 -10.04049 -9.61989 -9.38541 -8.48191 -5.97334 1.38917 1.40738 1.51991 1.56982 2.01580 2.02495 2.28324 2.91060 2.92360 3.18605 3.42144 3.50124 3.60115 3.70935 3.91417 3.93794 4.07772 4.12190 4.21594 4.25088 4.27208 4.36772 4.44268 4.47798 4.49213 4.52884 4.55292 4.63427 4.66224 4.69731 4.71461 4.73421 4.80195 4.84529 4.91020 4.98811 5.07447 5.09197 5.13784 5.20860 5.21686 5.38964 5.44033 5.60212 5.86621 6.08008 6.21475 6.30936 6.39959 6.57987 7.10274 7.19006 7.53459 8.08851 8.68923 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.001802 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.210242 B =15531.825802 C =16068.203974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 H 0.097 0.903 4 C 0.047 3.953 5 O -0.402 6.402 6 C 0.051 3.949 7 C -0.145 4.145 8 C -0.104 4.104 9 H 0.127 0.873 10 C 0.511 3.489 11 O -0.567 6.567 12 N -0.614 5.614 13 C 0.058 3.942 14 C 0.120 3.880 15 C -0.117 4.117 16 C 0.065 3.935 17 N -0.683 5.683 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.336 4.336 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.919 5.919 26 Si 0.994 3.006 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.272 1.272 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.025 0.975 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.032 0.968 48 H 0.339 0.661 49 H 0.109 0.891 50 H 0.063 0.937 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.136 29.566 8.866 31.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.119 4.119 3 H 0.116 0.884 4 C -0.029 4.029 5 O -0.322 6.322 6 C -0.025 4.025 7 C -0.182 4.182 8 C -0.125 4.125 9 H 0.145 0.855 10 C 0.301 3.699 11 O -0.447 6.447 12 N -0.346 5.346 13 C -0.084 4.084 14 C -0.004 4.004 15 C -0.156 4.156 16 C -0.064 4.064 17 N -0.315 5.315 18 C -0.068 4.068 19 C 0.223 3.777 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.466 4.466 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.818 3.182 27 H -0.196 1.196 28 H -0.194 1.194 29 H -0.198 1.198 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.043 0.957 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.050 0.950 48 H 0.157 0.843 49 H 0.127 0.873 50 H 0.081 0.919 51 H 0.231 0.769 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.432 29.522 8.675 31.655 hybrid contribution -0.546 -1.331 -1.043 1.776 sum -7.978 28.192 7.632 30.277 Atomic orbital electron populations 1.21920 0.93953 1.02875 1.02345 1.21529 0.96941 0.99867 0.93561 0.88448 1.22998 0.80040 1.01301 0.98565 1.87874 1.21430 1.76304 1.46551 1.22691 0.99784 0.93777 0.86285 1.22374 0.92938 1.04257 0.98648 1.21518 0.96916 0.92355 1.01689 0.85486 1.21094 0.78927 0.88263 0.81660 1.90589 1.41779 1.75639 1.36665 1.47966 1.60351 1.10744 1.15524 1.22356 0.98766 1.01005 0.86249 1.21382 0.96272 0.79615 1.03096 1.21752 0.99478 0.93462 1.00953 1.21945 0.91199 0.92202 1.01080 1.60123 1.37416 1.00892 1.33084 1.21548 0.93849 0.88845 1.02535 1.20897 0.90468 0.82887 0.83440 1.90486 1.32312 1.72158 1.56191 1.41926 1.15658 1.05696 1.57634 1.19639 0.95327 0.89873 1.41753 0.90357 1.26076 1.00581 0.97475 0.97205 1.69665 1.26282 1.11969 1.48088 0.84970 0.77573 0.76999 0.78678 1.19610 1.19354 1.19766 0.92371 0.91485 0.92158 0.92557 0.88947 0.95669 0.87579 0.87793 0.87816 0.90648 0.89525 0.88996 0.87701 0.91457 0.94335 0.90706 0.89108 0.95008 0.84289 0.87313 0.91886 0.76909 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.87 71.98 0.64 -1.69 16 2 C -0.10 -1.50 2.67 -10.70 -0.03 -1.53 16 3 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 4 C 0.05 1.00 5.86 72.01 0.42 1.42 16 5 O -0.40 -9.34 10.77 -148.98 -1.60 -10.94 16 6 C 0.05 0.96 6.62 72.01 0.48 1.43 16 7 C -0.14 -1.60 5.29 30.69 0.16 -1.44 16 8 C -0.10 -1.30 1.79 -11.42 -0.02 -1.32 16 9 H 0.13 0.87 7.75 -2.39 -0.02 0.85 16 10 C 0.51 9.42 5.30 87.66 0.46 9.89 16 11 O -0.57 -14.96 10.97 -3.04 -0.03 -14.99 16 12 N -0.61 -8.86 2.87 -846.77 -2.43 -11.29 16 13 C 0.06 0.37 9.85 127.77 1.26 1.63 16 14 C 0.12 1.96 5.43 86.38 0.47 2.43 16 15 C -0.12 -2.45 5.80 30.60 0.18 -2.27 16 16 C 0.06 1.52 5.69 86.30 0.49 2.01 16 17 N -0.68 -22.45 6.13 -517.94 -3.17 -25.62 16 18 C 0.06 2.28 6.17 85.56 0.53 2.81 16 19 C 0.44 21.36 7.82 87.66 0.69 22.05 16 20 O -0.62 -35.73 15.78 -3.08 -0.05 -35.77 16 21 N -0.57 -30.01 5.29 -306.97 -1.62 -31.64 16 22 C -0.34 -19.47 9.68 84.04 0.81 -18.65 16 23 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 25 N -0.92 -50.09 13.05 21.67 0.28 -49.81 16 26 Si 0.99 43.43 29.55 68.60 2.03 45.45 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 30 H 0.06 1.22 5.54 -2.39 -0.01 1.20 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 1.51 5.56 -2.39 -0.01 1.50 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.02 0.59 7.38 -2.38 -0.02 0.57 16 36 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 0.78 5.38 -2.39 -0.01 0.77 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.26 8.14 -2.39 -0.02 0.25 16 40 H 0.09 0.46 8.03 -2.38 -0.02 0.45 16 41 H 0.09 0.35 4.28 -2.39 -0.01 0.34 16 42 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 43 H 0.07 1.37 7.35 -2.39 -0.02 1.35 16 44 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 48 H 0.34 12.21 8.43 -89.69 -0.76 11.45 16 49 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 50 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 52 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -75.98 405.01 -0.15 -76.13 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: -0.55 Total: 41.99 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 7.00 Total: 16.49 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -6.95 Total: -118.36 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -1.69 Total: -61.71 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -75.98 -0.15 -76.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723116425.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.182 kcal (2) G-P(sol) polarization free energy of solvation -75.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds