Wall clock time and date at job start Wed Apr 1 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00226 * 2 1 4 4 H 1.09006 * 109.46748 * 30.00282 * 3 2 1 5 5 C 1.52997 * 109.47717 * 270.00288 * 3 2 1 6 6 C 1.53005 * 109.47496 * 150.00131 * 3 2 1 7 7 C 1.53004 * 109.46815 * 295.00784 * 6 3 2 8 8 C 1.50706 * 109.46941 * 179.97438 * 7 6 3 9 9 O 1.21276 * 119.99720 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99902 * 179.97438 * 8 7 6 11 11 C 1.47418 * 125.65102 * 4.88905 * 10 8 7 12 12 C 1.54910 * 104.83357 * 204.16602 * 11 10 8 13 13 C 1.55147 * 101.58166 * 322.98824 * 12 11 10 14 14 C 1.47022 * 125.64682 * 184.93271 * 10 8 7 15 15 H 1.09001 * 110.01091 * 59.41268 * 14 10 8 16 16 C 1.53003 * 109.88329 * 298.32340 * 14 10 8 17 17 N 1.46902 * 109.47047 * 177.05297 * 16 14 10 18 18 C 1.46899 * 110.99830 * 184.90100 * 17 16 14 19 19 C 1.50698 * 109.46800 * 179.97438 * 18 17 16 20 20 O 1.21295 * 120.00159 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99856 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00038 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00137 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00030 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99808 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99999 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47508 * 0.02562 * 26 24 22 28 28 H 1.48510 * 109.46924 * 119.99876 * 26 24 22 29 29 H 1.48501 * 109.47446 * 239.99427 * 26 24 22 30 30 H 1.08998 * 109.46835 * 299.99568 * 1 2 3 31 31 H 1.09000 * 109.47221 * 60.00077 * 1 2 3 32 32 H 1.09001 * 109.46681 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47704 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.47234 * 300.00180 * 5 3 2 35 35 H 1.09003 * 109.46971 * 59.99326 * 5 3 2 36 36 H 1.08993 * 109.47286 * 175.00166 * 6 3 2 37 37 H 1.08998 * 109.46672 * 54.99958 * 6 3 2 38 38 H 1.08993 * 109.47698 * 59.99634 * 7 6 3 39 39 H 1.08998 * 109.46826 * 299.99080 * 7 6 3 40 40 H 1.09004 * 110.36858 * 323.00580 * 11 10 8 41 41 H 1.09000 * 110.36766 * 85.21355 * 11 10 8 42 42 H 1.09004 * 111.00056 * 204.91594 * 12 11 10 43 43 H 1.09004 * 111.00076 * 81.06869 * 12 11 10 44 44 H 1.08998 * 110.72502 * 277.14002 * 13 12 11 45 45 H 1.09005 * 110.71922 * 153.86081 * 13 12 11 46 46 H 1.09002 * 109.46677 * 297.05011 * 16 14 10 47 47 H 1.08997 * 109.47003 * 57.05406 * 16 14 10 48 48 H 1.00901 * 110.99761 * 308.85988 * 17 16 14 49 49 H 1.08996 * 109.46716 * 299.99958 * 18 17 16 50 50 H 1.08994 * 109.47070 * 60.00292 * 18 17 16 51 51 H 0.96998 * 120.00049 * 359.97438 * 21 19 18 52 52 H 0.97003 * 120.00027 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3590 1.2632 0.7212 7 6 3.1384 0.9182 2.1954 8 6 4.4669 0.8760 2.9057 9 8 5.4894 1.0994 2.2930 10 7 4.5186 0.5901 4.2217 11 6 3.3717 0.2008 5.0621 12 6 3.7868 0.5877 6.5036 13 6 5.3005 0.2476 6.4937 14 6 5.7281 0.6156 5.0572 15 1 6.1686 1.6126 5.0454 16 6 6.7410 -0.4067 4.5377 17 7 7.9724 -0.3244 5.3347 18 6 9.0109 -1.2104 4.7919 19 6 10.2562 -1.0987 5.6331 20 8 10.2765 -0.3547 6.5908 21 7 11.3472 -1.8263 5.3218 22 6 12.4799 -1.7252 6.0873 23 1 12.4983 -1.0621 6.9396 24 6 13.6049 -2.4750 5.7661 25 7 13.5827 -3.2814 4.7287 26 14 15.1485 -2.3366 6.8087 27 1 14.9167 -1.3682 7.9103 28 1 15.4803 -3.6663 7.3809 29 1 16.2758 -1.8660 5.9642 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.6606 2.7673 -1.4424 34 1 2.8829 1.0776 -1.9564 35 1 1.2568 1.8015 -1.9563 36 1 3.8427 2.2369 0.6443 37 1 3.9931 0.5051 0.2617 38 1 2.6546 -0.0555 2.2723 39 1 2.5042 1.6763 2.6550 40 1 2.4789 0.7505 4.7640 41 1 3.1965 -0.8727 4.9913 42 1 3.2553 -0.0167 7.2387 43 1 3.6262 1.6506 6.6843 44 1 5.4585 -0.8141 6.6830 45 1 5.8369 0.8546 7.2231 46 1 6.3208 -1.4090 4.6208 47 1 6.9693 -0.1936 3.4934 48 1 8.3027 0.6272 5.3925 49 1 8.6536 -2.2400 4.8059 50 1 9.2380 -0.9184 3.7667 51 1 11.3306 -2.4222 4.5566 52 1 14.3678 -3.8051 4.5047 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723896997.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:34 Heat of formation + Delta-G solvation = -126.617829 kcal Electronic energy + Delta-G solvation = -29697.596437 eV Core-core repulsion = 25503.717706 eV Total energy + Delta-G solvation = -4193.878731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46120 -38.88058 -38.21794 -37.64545 -35.20014 -34.07384 -33.75776 -31.96037 -31.19265 -30.66074 -29.89143 -27.13724 -26.74943 -25.35363 -24.59332 -23.24214 -22.41293 -21.54495 -20.83970 -19.40954 -18.85508 -17.82561 -17.43377 -17.19718 -16.73745 -15.95306 -15.55497 -15.52863 -15.43830 -15.16506 -14.85207 -14.47887 -14.22366 -13.88160 -13.77477 -13.59800 -13.47067 -13.39651 -13.26170 -12.95164 -12.78760 -12.66483 -12.30504 -12.19095 -11.92093 -11.75888 -11.62932 -11.55659 -11.45899 -11.43660 -11.35142 -11.05363 -10.98663 -10.83254 -10.80134 -10.30741 -10.17863 -10.08567 -9.87744 -9.47026 -8.83500 -8.36903 -7.96929 -7.89800 -6.36776 -3.77441 2.49439 2.73933 3.19899 3.29936 3.36541 3.37526 3.97337 4.10890 4.19541 4.32806 4.39127 4.53180 4.54443 4.64276 4.73557 4.82931 4.86202 4.91688 4.93657 4.98356 5.10568 5.13224 5.21731 5.22459 5.24444 5.30218 5.30926 5.34681 5.44131 5.49279 5.58201 5.65093 5.68938 5.76151 5.85918 5.87402 5.91432 5.95917 6.00599 6.08481 6.21144 6.27553 6.36399 6.80016 7.25634 7.37660 7.60030 7.72996 8.03686 8.11851 8.66848 9.22934 9.60171 10.11699 10.81174 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.001829 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.468342 B =15306.159195 C =16505.136302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.084 3.916 4 H 0.060 0.940 5 C -0.175 4.175 6 C -0.102 4.102 7 C -0.133 4.133 8 C 0.526 3.474 9 O -0.535 6.535 10 N -0.617 5.617 11 C 0.100 3.900 12 C -0.137 4.137 13 C -0.114 4.114 14 C 0.139 3.861 15 H 0.074 0.926 16 C 0.048 3.952 17 N -0.664 5.664 18 C 0.052 3.948 19 C 0.443 3.557 20 O -0.583 6.583 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.348 0.652 49 H 0.085 0.915 50 H 0.044 0.956 51 H 0.392 0.608 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.460 7.760 -7.418 32.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.027 3.973 4 H 0.078 0.922 5 C -0.233 4.233 6 C -0.140 4.140 7 C -0.173 4.173 8 C 0.315 3.685 9 O -0.411 6.411 10 N -0.352 5.352 11 C -0.023 4.023 12 C -0.175 4.175 13 C -0.152 4.152 14 C 0.036 3.964 15 H 0.092 0.908 16 C -0.082 4.082 17 N -0.296 5.296 18 C -0.081 4.081 19 C 0.229 3.771 20 O -0.468 6.468 21 N -0.202 5.202 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.167 0.833 49 H 0.103 0.897 50 H 0.062 0.938 51 H 0.225 0.775 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.844 7.660 -6.804 31.554 hybrid contribution 0.771 0.219 -0.861 1.176 sum -29.073 7.879 -7.665 31.082 Atomic orbital electron populations 1.22778 0.81324 1.02736 0.99801 1.87957 1.19396 1.27861 1.95070 1.22200 0.94801 0.84572 0.95765 0.92176 1.22269 1.02320 1.01984 0.96688 1.21483 0.95660 1.03939 0.92911 1.21618 0.95025 1.04396 0.96228 1.20424 0.91617 0.76188 0.80251 1.90726 1.36353 1.49202 1.64838 1.48607 1.09731 1.68594 1.08259 1.22341 0.89056 1.00193 0.90704 1.22835 0.97125 1.02108 0.95452 1.22600 0.94292 1.03492 0.94839 1.21547 0.85427 0.99311 0.90121 0.90768 1.22305 0.90882 0.98826 0.96206 1.60088 1.03804 1.13517 1.52227 1.21650 0.91886 0.98353 0.96177 1.19810 0.84607 0.84979 0.87740 1.90511 1.83634 1.41890 1.30725 1.41872 1.11094 1.38809 1.28399 1.19758 0.89105 1.23797 1.10097 0.87865 1.25270 0.99545 0.96183 0.97074 1.69628 1.30960 1.26944 1.26828 0.85794 0.80829 0.78099 0.79570 1.19232 1.20782 1.20807 0.94107 0.94201 0.89673 0.91401 0.91484 0.92547 0.89768 0.90032 0.88373 0.89386 0.90754 0.91148 0.89773 0.90747 0.89748 0.89507 0.91284 0.93668 0.83324 0.89721 0.93818 0.77451 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.14 9.88 -35.23 -0.35 -3.49 16 3 C 0.08 0.59 2.72 -26.73 -0.07 0.51 16 4 H 0.06 0.33 7.79 -51.93 -0.40 -0.08 16 5 C -0.18 -1.12 9.53 37.16 0.35 -0.77 16 6 C -0.10 -0.87 4.21 -26.73 -0.11 -0.99 16 7 C -0.13 -1.07 4.53 -27.88 -0.13 -1.20 16 8 C 0.53 6.21 7.67 -10.98 -0.08 6.12 16 9 O -0.53 -8.49 14.80 5.56 0.08 -8.41 16 10 N -0.62 -6.51 3.06 -163.02 -0.50 -7.01 16 11 C 0.10 0.71 6.74 -2.53 -0.02 0.69 16 12 C -0.14 -0.95 7.08 -24.59 -0.17 -1.13 16 13 C -0.11 -1.16 6.24 -24.90 -0.16 -1.31 16 14 C 0.14 1.70 3.04 -66.95 -0.20 1.49 16 15 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 16 C 0.05 0.71 5.08 -3.82 -0.02 0.69 16 17 N -0.66 -11.53 5.91 -115.06 -0.68 -12.21 16 18 C 0.05 1.00 6.16 -4.98 -0.03 0.97 16 19 C 0.44 10.93 7.82 -10.99 -0.09 10.85 16 20 O -0.58 -16.27 15.78 5.54 0.09 -16.19 16 21 N -0.56 -14.90 5.29 -10.96 -0.06 -14.95 16 22 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 23 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -25.22 13.05 55.50 0.72 -24.50 16 26 Si 0.93 21.52 29.55 -169.99 -5.02 16.50 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 H 0.04 0.16 8.08 -51.93 -0.42 -0.26 16 31 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.31 7.87 -51.93 -0.41 -0.09 16 36 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 38 H 0.10 0.74 7.82 -51.93 -0.41 0.34 16 39 H 0.09 0.52 7.95 -51.93 -0.41 0.11 16 40 H 0.07 0.37 7.47 -51.93 -0.39 -0.02 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.93 7.80 -51.93 -0.41 0.52 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 47 H 0.05 0.76 6.60 -51.93 -0.34 0.41 16 48 H 0.35 6.29 8.36 -39.29 -0.33 5.96 16 49 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 50 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.39 9.94 7.90 -40.82 -0.32 9.62 16 52 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 422.13 15.07 6.36 6.36 Total: -1.00 -34.50 422.13 -8.47 -42.98 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -9.25 Total: 11.96 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 0.12 Total: 8.96 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.51 Total: -58.67 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.18 Total: -28.09 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.50 -8.47 -42.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723896997.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.642 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds