Wall clock time and date at job start Wed Apr 1 2020 01:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00226 * 2 1 4 4 H 1.09006 * 109.46748 * 30.00282 * 3 2 1 5 5 C 1.52997 * 109.47717 * 270.00288 * 3 2 1 6 6 C 1.53005 * 109.47496 * 150.00131 * 3 2 1 7 7 C 1.53004 * 109.46815 * 295.00784 * 6 3 2 8 8 C 1.50706 * 109.46941 * 179.97438 * 7 6 3 9 9 O 1.21276 * 119.99720 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99902 * 179.97438 * 8 7 6 11 11 C 1.47418 * 125.65102 * 4.88905 * 10 8 7 12 12 C 1.54910 * 104.83357 * 204.16602 * 11 10 8 13 13 C 1.55147 * 101.58166 * 322.98824 * 12 11 10 14 14 C 1.47022 * 125.64682 * 184.93271 * 10 8 7 15 15 H 1.09001 * 110.01091 * 59.41268 * 14 10 8 16 16 C 1.53003 * 109.88329 * 298.32340 * 14 10 8 17 17 N 1.46902 * 109.47047 * 177.05297 * 16 14 10 18 18 C 1.46899 * 110.99830 * 184.90100 * 17 16 14 19 19 C 1.50698 * 109.46800 * 179.97438 * 18 17 16 20 20 O 1.21295 * 120.00159 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99856 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00038 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00137 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00030 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99808 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99999 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47508 * 0.02562 * 26 24 22 28 28 H 1.48510 * 109.46924 * 119.99876 * 26 24 22 29 29 H 1.48501 * 109.47446 * 239.99427 * 26 24 22 30 30 H 1.08998 * 109.46835 * 299.99568 * 1 2 3 31 31 H 1.09000 * 109.47221 * 60.00077 * 1 2 3 32 32 H 1.09001 * 109.46681 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47704 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.47234 * 300.00180 * 5 3 2 35 35 H 1.09003 * 109.46971 * 59.99326 * 5 3 2 36 36 H 1.08993 * 109.47286 * 175.00166 * 6 3 2 37 37 H 1.08998 * 109.46672 * 54.99958 * 6 3 2 38 38 H 1.08993 * 109.47698 * 59.99634 * 7 6 3 39 39 H 1.08998 * 109.46826 * 299.99080 * 7 6 3 40 40 H 1.09004 * 110.36858 * 323.00580 * 11 10 8 41 41 H 1.09000 * 110.36766 * 85.21355 * 11 10 8 42 42 H 1.09004 * 111.00056 * 204.91594 * 12 11 10 43 43 H 1.09004 * 111.00076 * 81.06869 * 12 11 10 44 44 H 1.08998 * 110.72502 * 277.14002 * 13 12 11 45 45 H 1.09005 * 110.71922 * 153.86081 * 13 12 11 46 46 H 1.09002 * 109.46677 * 297.05011 * 16 14 10 47 47 H 1.08997 * 109.47003 * 57.05406 * 16 14 10 48 48 H 1.00901 * 110.99761 * 308.85988 * 17 16 14 49 49 H 1.08996 * 109.46716 * 299.99958 * 18 17 16 50 50 H 1.08994 * 109.47070 * 60.00292 * 18 17 16 51 51 H 0.96998 * 120.00049 * 359.97438 * 21 19 18 52 52 H 0.97003 * 120.00027 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3590 1.2632 0.7212 7 6 3.1384 0.9182 2.1954 8 6 4.4669 0.8760 2.9057 9 8 5.4894 1.0994 2.2930 10 7 4.5186 0.5901 4.2217 11 6 3.3717 0.2008 5.0621 12 6 3.7868 0.5877 6.5036 13 6 5.3005 0.2476 6.4937 14 6 5.7281 0.6156 5.0572 15 1 6.1686 1.6126 5.0454 16 6 6.7410 -0.4067 4.5377 17 7 7.9724 -0.3244 5.3347 18 6 9.0109 -1.2104 4.7919 19 6 10.2562 -1.0987 5.6331 20 8 10.2765 -0.3547 6.5908 21 7 11.3472 -1.8263 5.3218 22 6 12.4799 -1.7252 6.0873 23 1 12.4983 -1.0621 6.9396 24 6 13.6049 -2.4750 5.7661 25 7 13.5827 -3.2814 4.7287 26 14 15.1485 -2.3366 6.8087 27 1 14.9167 -1.3682 7.9103 28 1 15.4803 -3.6663 7.3809 29 1 16.2758 -1.8660 5.9642 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.6606 2.7673 -1.4424 34 1 2.8829 1.0776 -1.9564 35 1 1.2568 1.8015 -1.9563 36 1 3.8427 2.2369 0.6443 37 1 3.9931 0.5051 0.2617 38 1 2.6546 -0.0555 2.2723 39 1 2.5042 1.6763 2.6550 40 1 2.4789 0.7505 4.7640 41 1 3.1965 -0.8727 4.9913 42 1 3.2553 -0.0167 7.2387 43 1 3.6262 1.6506 6.6843 44 1 5.4585 -0.8141 6.6830 45 1 5.8369 0.8546 7.2231 46 1 6.3208 -1.4090 4.6208 47 1 6.9693 -0.1936 3.4934 48 1 8.3027 0.6272 5.3925 49 1 8.6536 -2.2400 4.8059 50 1 9.2380 -0.9184 3.7667 51 1 11.3306 -2.4222 4.5566 52 1 14.3678 -3.8051 4.5047 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723896997.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:33 Heat of formation + Delta-G solvation = -152.094295 kcal Electronic energy + Delta-G solvation = -29698.701180 eV Core-core repulsion = 25503.717706 eV Total energy + Delta-G solvation = -4194.983473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34102 -40.18319 -39.42352 -38.58287 -36.64786 -35.81480 -34.70834 -33.31012 -32.76105 -31.51738 -30.75778 -28.27582 -27.53265 -26.42628 -25.92532 -24.50017 -23.28813 -22.14599 -21.65144 -21.18059 -20.06369 -19.75317 -18.24310 -18.00355 -17.76264 -17.27498 -16.94394 -16.54241 -16.28122 -16.09331 -15.97860 -15.91934 -15.53363 -15.22885 -15.01627 -14.90525 -14.43877 -14.17888 -14.04127 -13.99578 -13.63498 -13.47833 -13.39049 -13.36075 -13.22027 -13.09134 -12.87294 -12.68327 -12.46749 -12.42579 -12.23988 -12.11600 -12.07462 -11.97895 -11.82440 -11.58106 -11.53768 -11.53375 -10.89965 -10.50865 -10.40468 -10.04727 -9.69419 -9.43560 -8.48697 -5.98160 1.35725 1.40762 1.55807 1.60946 1.90367 2.00433 2.28299 2.89138 2.92231 3.17773 3.40625 3.53661 3.70058 3.79443 3.83236 3.89042 4.09247 4.20957 4.23159 4.24262 4.31050 4.34664 4.39401 4.46354 4.49992 4.51414 4.55592 4.62041 4.65086 4.68944 4.76791 4.79880 4.86818 4.92654 4.97829 5.02887 5.05664 5.08308 5.17946 5.22073 5.32533 5.35868 5.39084 5.44328 5.78632 6.02095 6.25314 6.35044 6.54784 6.56369 7.09230 7.15599 7.51792 8.06384 8.69134 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.001829 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.468342 B =15306.159195 C =16505.136302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.088 3.912 4 H 0.084 0.916 5 C -0.176 4.176 6 C -0.101 4.101 7 C -0.120 4.120 8 C 0.517 3.483 9 O -0.587 6.587 10 N -0.615 5.615 11 C 0.095 3.905 12 C -0.125 4.125 13 C -0.113 4.113 14 C 0.139 3.861 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.665 5.665 18 C 0.065 3.935 19 C 0.441 3.559 20 O -0.619 6.619 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.081 0.919 24 C -0.015 4.015 25 N -0.922 5.922 26 Si 0.997 3.003 27 H -0.272 1.272 28 H -0.269 1.269 29 H -0.271 1.271 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.023 0.977 48 H 0.342 0.658 49 H 0.104 0.896 50 H 0.054 0.946 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.861 7.712 -6.907 34.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.031 3.969 4 H 0.102 0.898 5 C -0.233 4.233 6 C -0.139 4.139 7 C -0.160 4.160 8 C 0.308 3.692 9 O -0.467 6.467 10 N -0.349 5.349 11 C -0.026 4.026 12 C -0.163 4.163 13 C -0.151 4.151 14 C 0.035 3.965 15 H 0.075 0.925 16 C -0.072 4.072 17 N -0.297 5.297 18 C -0.067 4.067 19 C 0.228 3.772 20 O -0.505 6.505 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.099 0.901 24 C -0.215 4.215 25 N -0.562 5.562 26 Si 0.821 3.179 27 H -0.196 1.196 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.127 0.873 39 H 0.138 0.862 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.041 0.959 48 H 0.160 0.840 49 H 0.122 0.878 50 H 0.072 0.928 51 H 0.229 0.771 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -32.300 7.586 -6.297 33.771 hybrid contribution 1.486 0.222 -1.041 1.828 sum -30.814 7.808 -7.339 32.624 Atomic orbital electron populations 1.22952 0.79804 1.03536 1.00909 1.87927 1.21151 1.28479 1.95219 1.22174 0.94093 0.84800 0.95844 0.89822 1.22277 1.02562 1.01896 0.96583 1.21430 0.96331 1.02555 0.93566 1.21612 0.93071 1.05970 0.95313 1.21190 0.92392 0.75154 0.80466 1.90704 1.38358 1.51584 1.66068 1.48728 1.10188 1.67790 1.08187 1.22641 0.88660 1.01339 0.89947 1.22834 0.94350 1.03063 0.96050 1.22535 0.96968 1.02723 0.92880 1.21445 0.85807 0.97510 0.91752 0.92457 1.22269 0.90282 1.00030 0.94603 1.60113 1.04069 1.12810 1.52743 1.21512 0.89950 0.99901 0.95364 1.20685 0.85533 0.83498 0.87498 1.90478 1.84470 1.43109 1.32468 1.41939 1.11259 1.39342 1.28437 1.19748 0.90873 1.25067 1.10729 0.90088 1.26119 1.02066 0.95193 0.98090 1.69693 1.32116 1.26909 1.27525 0.84810 0.76879 0.78396 0.77853 1.19632 1.19446 1.19606 0.92482 0.93569 0.89148 0.90718 0.93149 0.91467 0.90426 0.93033 0.87265 0.86187 0.87618 0.90144 0.87529 0.89967 0.90570 0.90362 0.90681 0.95882 0.84017 0.87829 0.92786 0.77073 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.82 113.37 1.23 1.42 16 2 O -0.41 -6.01 9.88 -148.98 -1.47 -7.49 16 3 C 0.09 1.09 2.72 30.59 0.08 1.17 16 4 H 0.08 0.65 7.79 -2.38 -0.02 0.63 16 5 C -0.18 -2.11 9.53 71.98 0.69 -1.42 16 6 C -0.10 -1.69 4.21 30.60 0.13 -1.56 16 7 C -0.12 -1.71 4.53 29.85 0.14 -1.57 16 8 C 0.52 11.95 7.67 87.66 0.67 12.63 16 9 O -0.59 -19.42 14.80 -3.02 -0.04 -19.47 16 10 N -0.62 -12.21 3.06 -788.05 -2.41 -14.63 16 11 C 0.10 1.04 6.74 86.86 0.59 1.62 16 12 C -0.13 -1.37 7.08 31.98 0.23 -1.14 16 13 C -0.11 -2.18 6.24 31.78 0.20 -1.98 16 14 C 0.14 3.38 3.04 45.34 0.14 3.52 16 15 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 16 C 0.06 1.73 5.08 86.30 0.44 2.17 16 17 N -0.67 -23.60 5.91 -517.94 -3.06 -26.66 16 18 C 0.07 2.55 6.16 85.56 0.53 3.07 16 19 C 0.44 22.30 7.82 87.66 0.69 22.98 16 20 O -0.62 -35.62 15.78 -3.08 -0.05 -35.67 16 21 N -0.57 -30.96 5.29 -306.98 -1.62 -32.58 16 22 C -0.33 -19.67 9.68 84.04 0.81 -18.86 16 23 H 0.08 5.04 7.16 -2.91 -0.02 5.02 16 24 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 25 N -0.92 -51.34 13.05 21.66 0.28 -51.06 16 26 Si 1.00 44.00 29.55 68.60 2.03 46.03 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 29 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 30 H 0.06 0.27 8.08 -2.39 -0.02 0.25 16 31 H 0.05 0.30 7.87 -2.39 -0.02 0.28 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.65 7.87 -2.39 -0.02 0.63 16 36 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 37 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 38 H 0.11 1.36 7.82 -2.39 -0.02 1.34 16 39 H 0.12 0.96 7.95 -2.39 -0.02 0.94 16 40 H 0.11 0.55 7.47 -2.38 -0.02 0.53 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 1.60 7.80 -2.39 -0.02 1.58 16 45 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 47 H 0.02 0.80 6.60 -2.39 -0.02 0.78 16 48 H 0.34 12.86 8.36 -89.69 -0.75 12.11 16 49 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 50 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.40 20.47 7.90 -92.71 -0.73 19.74 16 52 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -77.37 422.13 0.09 -77.28 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: -0.57 Total: 42.56 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 7.01 Total: 21.68 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -6.81 Total: -124.93 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -1.57 Total: -62.62 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -77.37 0.09 -77.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723896997.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.813 kcal (2) G-P(sol) polarization free energy of solvation -77.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds