Wall clock time and date at job start Wed Apr 1 2020 01:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99696 * 2 1 4 4 C 1.53005 * 109.46916 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47274 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47257 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00113 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99961 * 180.02562 * 6 5 4 9 9 C 1.47421 * 125.64843 * 359.69671 * 8 6 5 10 10 C 1.55129 * 104.72458 * 155.81647 * 9 8 6 11 11 H 1.09000 * 110.90832 * 155.27006 * 10 9 8 12 12 C 1.52999 * 111.22368 * 279.17578 * 10 9 8 13 13 C 1.55159 * 101.48377 * 37.29063 * 10 9 8 14 14 H 1.08998 * 110.86977 * 82.77035 * 13 10 9 15 15 C 1.52997 * 110.71844 * 205.97045 * 13 10 9 16 16 N 1.46908 * 109.47049 * 179.97438 * 15 13 10 17 17 C 1.46891 * 110.99914 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47305 * 180.02562 * 17 16 15 19 19 O 1.21295 * 119.99792 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00581 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00065 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00152 * 0.02562 * 21 20 18 23 23 C 1.38960 * 119.99796 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99601 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99839 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47058 * 90.00040 * 25 23 21 27 27 H 1.48500 * 109.46874 * 209.99864 * 25 23 21 28 28 H 1.48500 * 109.47336 * 329.99812 * 25 23 21 29 29 C 1.47018 * 125.64722 * 180.02562 * 8 6 5 30 30 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47454 * 300.00075 * 1 2 3 32 32 H 1.09007 * 109.47551 * 60.00371 * 1 2 3 33 33 H 1.08999 * 109.47560 * 60.00481 * 3 2 1 34 34 H 1.09000 * 109.47229 * 299.99519 * 3 2 1 35 35 H 1.09004 * 109.47166 * 59.99547 * 4 3 2 36 36 H 1.09005 * 109.46988 * 299.99935 * 4 3 2 37 37 H 1.09004 * 109.47330 * 59.99726 * 5 4 3 38 38 H 1.08997 * 109.47279 * 300.00213 * 5 4 3 39 39 H 1.09005 * 110.36058 * 274.74476 * 9 8 6 40 40 H 1.08997 * 110.36930 * 37.06604 * 9 8 6 41 41 H 1.08996 * 109.47255 * 172.20621 * 12 10 9 42 42 H 1.09004 * 109.46942 * 292.20253 * 12 10 9 43 43 H 1.09006 * 109.47070 * 52.20352 * 12 10 9 44 44 H 1.09001 * 109.47189 * 299.97562 * 15 13 10 45 45 H 1.08999 * 109.47066 * 59.97889 * 15 13 10 46 46 H 1.00901 * 110.99612 * 56.04480 * 16 15 13 47 47 H 1.09004 * 109.47367 * 299.99899 * 17 16 15 48 48 H 1.08999 * 109.47196 * 60.00170 * 17 16 15 49 49 H 0.96996 * 119.99640 * 359.97438 * 20 18 17 50 50 H 0.97007 * 119.99560 * 179.97438 * 24 23 21 51 51 H 1.09010 * 109.88204 * 300.44210 * 29 8 6 52 52 H 1.09004 * 109.88434 * 61.44920 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5823 -0.0013 6 6 5.6600 2.4634 -0.0013 7 8 6.1816 1.3685 -0.0013 8 7 6.4239 3.5738 -0.0013 9 6 5.9240 4.9606 -0.0076 10 6 7.0752 5.7976 0.6095 11 1 7.0250 6.8339 0.2754 12 6 7.0621 5.7157 2.1373 13 6 8.3232 5.0846 0.0251 14 1 8.5383 5.4417 -0.9820 15 6 9.5355 5.2808 0.9374 16 7 10.6993 4.5955 0.3596 17 6 11.8850 4.7632 1.2103 18 6 13.0561 4.0488 0.5864 19 8 12.9165 3.4576 -0.4635 20 7 14.2583 4.0659 1.1955 21 6 15.3237 3.4163 0.6276 22 1 15.1998 2.8914 -0.3080 23 6 16.5631 3.4335 1.2558 24 7 16.7138 4.0727 2.3940 25 14 18.0146 2.5479 0.4824 26 1 18.7374 3.4782 -0.4215 27 1 18.9348 2.0800 1.5499 28 1 17.5254 1.3816 -0.2958 29 6 7.8938 3.6025 -0.0018 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8463 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6436 0.8892 37 1 3.8364 3.1235 0.8887 38 1 3.8357 3.1230 -0.8912 39 1 5.7203 5.2857 -1.0280 40 1 5.0256 5.0429 0.6041 41 1 7.9565 6.1953 2.5345 42 1 6.1769 6.2232 2.5207 43 1 7.0433 4.6701 2.4449 44 1 9.7506 6.3452 1.0319 45 1 9.3207 4.8648 1.9217 46 1 10.8797 4.9183 -0.5793 47 1 12.1163 5.8241 1.3063 48 1 11.6867 4.3439 2.1967 49 1 14.3698 4.5383 2.0353 50 1 17.5789 4.0844 2.8328 51 1 8.2750 3.0902 0.8817 52 1 8.2738 3.1202 -0.9025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724572589.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:26 Heat of formation + Delta-G solvation = -154.582874 kcal Electronic energy + Delta-G solvation = -29283.688892 eV Core-core repulsion = 25088.597506 eV Total energy + Delta-G solvation = -4195.091386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34366 -40.17201 -39.37146 -38.76257 -36.64768 -35.82429 -34.67835 -33.69540 -33.25520 -31.27019 -29.33840 -28.22083 -27.63446 -26.88960 -26.14204 -24.82117 -23.21417 -22.52966 -21.19893 -20.41364 -20.11221 -19.84100 -18.25211 -17.80737 -17.53843 -17.30961 -17.11025 -16.87937 -16.46078 -16.23510 -16.05087 -15.93405 -15.53773 -15.41364 -15.27131 -14.76279 -14.53327 -14.22786 -14.13261 -13.88096 -13.53110 -13.42091 -13.25146 -13.10786 -13.02422 -12.97584 -12.85222 -12.83384 -12.60137 -12.53344 -12.43320 -12.13894 -11.97234 -11.91297 -11.69224 -11.55616 -11.52095 -11.43315 -10.91646 -10.60021 -10.35815 -10.02553 -9.64242 -9.28484 -8.48025 -5.96699 1.36739 1.40519 1.53426 1.62354 1.96661 2.04365 2.28303 2.86909 2.90665 3.19307 3.39600 3.52511 3.62747 3.76443 3.90718 3.97429 4.13912 4.23259 4.29987 4.32110 4.33878 4.43397 4.46440 4.50738 4.51978 4.53447 4.56571 4.58619 4.61923 4.66886 4.71863 4.73519 4.78921 4.87392 4.91801 4.98967 5.09804 5.13083 5.21145 5.22535 5.26154 5.34839 5.39681 5.52347 5.88671 6.10897 6.27264 6.43138 6.56291 6.59265 7.11605 7.16701 7.55150 8.11048 8.69364 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.001649 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.639526 B =16975.608308 C =18088.009510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.428 6.428 3 C 0.064 3.936 4 C -0.105 4.105 5 C -0.116 4.116 6 C 0.512 3.488 7 O -0.599 6.599 8 N -0.618 5.618 9 C 0.098 3.902 10 C -0.088 4.088 11 H 0.123 0.877 12 C -0.146 4.146 13 C -0.085 4.085 14 H 0.092 0.908 15 C 0.071 3.929 16 N -0.689 5.689 17 C 0.068 3.932 18 C 0.435 3.565 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.269 1.269 27 H -0.270 1.270 28 H -0.276 1.276 29 C 0.124 3.876 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.344 0.656 47 H 0.071 0.929 48 H 0.099 0.901 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.043 0.957 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.452 9.734 -0.149 34.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.348 6.348 3 C -0.012 4.012 4 C -0.143 4.143 5 C -0.156 4.156 6 C 0.303 3.697 7 O -0.480 6.480 8 N -0.351 5.351 9 C -0.023 4.023 10 C -0.107 4.107 11 H 0.141 0.859 12 C -0.203 4.203 13 C -0.104 4.104 14 H 0.110 0.890 15 C -0.057 4.057 16 N -0.322 5.322 17 C -0.065 4.065 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.194 1.194 27 H -0.194 1.194 28 H -0.201 1.201 29 C 0.001 3.999 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.163 0.837 47 H 0.089 0.911 48 H 0.117 0.883 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.061 0.939 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -33.214 7.960 -0.438 34.157 hybrid contribution 1.536 0.264 -0.098 1.562 sum -31.677 8.224 -0.536 32.731 Atomic orbital electron populations 1.22919 0.79273 1.03653 1.01159 1.87858 1.21737 1.29497 1.95691 1.22586 0.92199 0.84354 1.02027 1.21182 0.94029 0.96507 1.02584 1.21510 0.87968 0.98790 1.07302 1.21180 0.90996 0.82347 0.75164 1.90732 1.76392 1.28486 1.52429 1.48701 1.06773 1.07412 1.72241 1.22815 0.98328 0.78507 1.02683 1.22451 0.91739 1.00421 0.96138 0.85925 1.21813 1.03219 1.01210 0.94059 1.22222 0.94903 0.92818 1.00463 0.88986 1.22114 0.88469 0.97005 0.98158 1.60063 1.03765 1.62726 1.05665 1.21494 0.88455 0.98984 0.97525 1.20972 0.84872 0.85268 0.86611 1.90497 1.84797 1.49523 1.26346 1.41921 1.08061 1.47791 1.23213 1.19667 0.88966 1.30832 1.07139 0.90528 1.26019 1.00877 0.97921 0.96274 1.69669 1.26514 1.42854 1.16951 0.84939 0.77229 0.78288 0.77944 1.19382 1.19432 1.20100 1.21704 0.79994 0.98074 1.00142 0.89216 0.92758 0.92789 0.91158 0.91216 0.92927 0.92878 0.85559 0.85655 0.89105 0.87417 0.91732 0.90242 0.94580 0.92480 0.90607 0.83691 0.91074 0.88276 0.76928 0.91260 0.93898 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.43 -7.75 10.70 -148.98 -1.59 -9.34 16 3 C 0.06 0.80 5.94 71.98 0.43 1.23 16 4 C -0.10 -1.86 4.87 30.59 0.15 -1.71 16 5 C -0.12 -1.45 4.70 29.85 0.14 -1.31 16 6 C 0.51 12.20 7.85 87.66 0.69 12.89 16 7 O -0.60 -21.71 16.31 -3.03 -0.05 -21.76 16 8 N -0.62 -12.30 3.31 -811.35 -2.69 -14.98 16 9 C 0.10 0.88 6.17 86.93 0.54 1.41 16 10 C -0.09 -0.84 3.54 -9.32 -0.03 -0.87 16 11 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 12 C -0.15 -1.51 8.15 71.98 0.59 -0.92 16 13 C -0.08 -1.49 2.99 -9.61 -0.03 -1.52 16 14 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 15 C 0.07 1.48 3.94 86.30 0.34 1.82 16 16 N -0.69 -21.54 5.94 -517.94 -3.07 -24.61 16 17 C 0.07 2.33 6.17 85.56 0.53 2.86 16 18 C 0.44 21.25 7.82 87.66 0.69 21.94 16 19 O -0.63 -35.85 15.78 -3.08 -0.05 -35.90 16 20 N -0.57 -30.03 5.29 -306.98 -1.62 -31.65 16 21 C -0.34 -19.60 9.68 84.04 0.81 -18.78 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.92 -50.14 13.05 21.67 0.28 -49.86 16 25 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 28 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 29 C 0.12 3.18 5.97 86.73 0.52 3.70 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 35 H 0.05 1.20 8.10 -2.38 -0.02 1.18 16 36 H 0.05 1.20 8.10 -2.38 -0.02 1.18 16 37 H 0.13 0.78 7.85 -2.38 -0.02 0.76 16 38 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 0.53 8.14 -2.38 -0.02 0.52 16 40 H 0.11 0.37 7.40 -2.39 -0.02 0.35 16 41 H 0.06 0.70 6.76 -2.39 -0.02 0.68 16 42 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.03 0.55 7.91 -2.38 -0.02 0.53 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 45 H 0.08 1.62 6.67 -2.39 -0.02 1.60 16 46 H 0.34 11.17 8.43 -89.69 -0.76 10.42 16 47 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 49 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 50 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 51 H 0.04 1.36 7.77 -2.38 -0.02 1.34 16 52 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -84.00 421.89 -0.28 -84.27 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: -0.58 Total: 35.86 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 7.07 Total: 22.10 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -7.10 Total: -121.10 kcal Atomic # 8 Polarization: -65.31 SS G_CDS: -1.69 Total: -67.00 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -84.00 -0.28 -84.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724572589.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.308 kcal (2) G-P(sol) polarization free energy of solvation -83.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds