Wall clock time and date at job start Wed Apr 1 2020 01:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99871 * 2 1 4 4 C 1.52999 * 109.46962 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47152 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.46927 * 179.97438 * 5 4 3 7 7 O 1.21277 * 119.99813 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99834 * 179.97438 * 6 5 4 9 9 C 1.48148 * 127.83663 * 359.97438 * 8 6 5 10 10 C 1.54385 * 104.61857 * 140.41458 * 9 8 6 11 11 H 1.09003 * 110.43296 * 264.94964 * 10 9 8 12 12 C 1.52999 * 110.34276 * 142.73145 * 10 9 8 13 13 C 1.54294 * 104.95870 * 23.86577 * 10 9 8 14 14 H 1.09007 * 110.33963 * 241.02333 * 13 10 9 15 15 C 1.53000 * 110.34099 * 118.87129 * 13 10 9 16 16 N 1.46901 * 109.46855 * 176.47126 * 15 13 10 17 17 C 1.46898 * 111.00189 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46850 * 90.00463 * 25 23 21 27 27 H 1.48504 * 109.47159 * 210.00116 * 25 23 21 28 28 H 1.48497 * 109.47216 * 330.00562 * 25 23 21 29 29 C 1.48307 * 127.76856 * 179.90947 * 8 6 5 30 30 H 1.09002 * 109.47322 * 299.99973 * 1 2 3 31 31 H 1.09009 * 109.47053 * 59.99763 * 1 2 3 32 32 H 1.08996 * 109.47097 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47120 * 60.00620 * 3 2 1 34 34 H 1.09004 * 109.47737 * 300.00239 * 3 2 1 35 35 H 1.09000 * 109.47245 * 60.00059 * 4 3 2 36 36 H 1.09004 * 109.47172 * 300.00686 * 4 3 2 37 37 H 1.08996 * 109.47333 * 60.00172 * 5 4 3 38 38 H 1.08993 * 109.46862 * 299.99939 * 5 4 3 39 39 H 1.08999 * 110.40950 * 21.62706 * 9 8 6 40 40 H 1.08997 * 110.40546 * 259.20034 * 9 8 6 41 41 H 1.08993 * 109.47786 * 304.46644 * 12 10 9 42 42 H 1.09004 * 109.47005 * 64.47039 * 12 10 9 43 43 H 1.09002 * 109.46994 * 184.46214 * 12 10 9 44 44 H 1.08998 * 109.47488 * 56.47328 * 15 13 10 45 45 H 1.08993 * 109.47041 * 296.46955 * 15 13 10 46 46 H 1.00907 * 110.99760 * 56.04664 * 16 15 13 47 47 H 1.09000 * 109.46741 * 60.00112 * 17 16 15 48 48 H 1.09002 * 109.46898 * 300.00102 * 17 16 15 49 49 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 51 51 H 1.09005 * 110.38133 * 100.79613 * 29 8 6 52 52 H 1.08995 * 110.50913 * 338.30906 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5824 0.0013 6 6 5.6601 2.4633 0.0026 7 8 6.1816 1.3684 0.0034 8 7 6.4241 3.5736 0.0028 9 6 5.9753 4.9855 0.0014 10 6 6.9533 5.7062 0.9540 11 1 6.5326 5.7655 1.9578 12 6 7.2726 7.1071 0.4284 13 6 8.2245 4.8316 0.9561 14 1 8.4280 4.4614 1.9609 15 6 9.4200 5.6297 0.4320 16 7 10.6343 4.8078 0.5211 17 6 11.8052 5.5430 0.0248 18 6 13.0288 4.6697 0.1311 19 8 12.9346 3.5454 0.5761 20 7 14.2276 5.1379 -0.2693 21 6 15.3409 4.3436 -0.1721 22 1 15.2571 3.3428 0.2249 23 6 16.5758 4.8242 -0.5901 24 7 16.6767 6.0401 -1.0782 25 14 18.0925 3.7417 -0.4583 26 1 18.2520 2.9588 -1.7100 27 1 19.2916 4.5929 -0.2507 28 1 17.9396 2.8131 0.6904 29 6 7.9048 3.6574 0.0058 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8901 34 1 1.6886 1.8465 -0.8900 35 1 3.8575 0.6436 -0.8891 36 1 3.8567 0.6437 0.8908 37 1 3.8358 3.1231 0.8912 38 1 3.8366 3.1234 -0.8886 39 1 4.9547 5.0603 0.3766 40 1 6.0438 5.4050 -1.0023 41 1 7.6559 7.0348 -0.5893 42 1 6.3660 7.7123 0.4331 43 1 8.0232 7.5725 1.0672 44 1 9.5464 6.5309 1.0318 45 1 9.2443 5.9067 -0.6074 46 1 10.5183 3.9364 0.0258 47 1 11.9483 6.4438 0.6215 48 1 11.6458 5.8191 -1.0176 49 1 14.3028 6.0370 -0.6255 50 1 17.5389 6.3757 -1.3696 51 1 8.2751 3.8687 -0.9974 52 1 8.3388 2.7324 0.3852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724572597.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:29 Heat of formation + Delta-G solvation = -150.554850 kcal Electronic energy + Delta-G solvation = -29200.645291 eV Core-core repulsion = 25005.728573 eV Total energy + Delta-G solvation = -4194.916718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31043 -40.17743 -39.43641 -38.78215 -36.59480 -35.81782 -34.68606 -33.90091 -33.26176 -31.31833 -29.36943 -28.20751 -27.42182 -26.67780 -26.14937 -24.88652 -23.53823 -22.63356 -21.16501 -20.28300 -20.05858 -19.74842 -18.29060 -17.92561 -17.40783 -17.35437 -17.19232 -16.62803 -16.50604 -16.40788 -16.09919 -15.88671 -15.68926 -15.35082 -15.20389 -15.05966 -14.61303 -14.32280 -14.13477 -13.63026 -13.54101 -13.28236 -13.21883 -13.09379 -13.04037 -12.95540 -12.88260 -12.74913 -12.67787 -12.60488 -12.42889 -12.13085 -11.97836 -11.92129 -11.62240 -11.52286 -11.47869 -11.32389 -10.95580 -10.60556 -10.35280 -10.02082 -9.80735 -9.29319 -8.47653 -5.96224 1.37009 1.40919 1.53654 1.57920 1.87186 2.04857 2.28705 2.85511 2.92096 3.19679 3.42107 3.51311 3.63070 3.76725 3.90058 3.96756 4.12426 4.17907 4.27705 4.32705 4.36174 4.43311 4.46094 4.49536 4.50005 4.51786 4.55482 4.56858 4.58594 4.63948 4.71243 4.71622 4.79561 4.82116 4.87075 4.94060 5.08501 5.12887 5.18847 5.24728 5.26032 5.39646 5.40255 5.57417 5.89657 6.12260 6.26546 6.37374 6.55230 6.59938 7.10910 7.12208 7.55693 8.11862 8.69689 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019304 B = 0.001614 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.125297 B =17340.643489 C =18572.069194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.428 6.428 3 C 0.064 3.936 4 C -0.105 4.105 5 C -0.117 4.117 6 C 0.521 3.479 7 O -0.597 6.597 8 N -0.625 5.625 9 C 0.102 3.898 10 C -0.091 4.091 11 H 0.093 0.907 12 C -0.146 4.146 13 C -0.090 4.090 14 H 0.071 0.929 15 C 0.071 3.929 16 N -0.691 5.691 17 C 0.067 3.933 18 C 0.434 3.566 19 O -0.627 6.627 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.918 5.918 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.268 1.268 28 H -0.275 1.275 29 C 0.104 3.896 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.338 0.662 47 H 0.108 0.892 48 H 0.068 0.932 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.070 0.930 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.034 6.375 0.028 34.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.348 6.348 3 C -0.012 4.012 4 C -0.143 4.143 5 C -0.157 4.157 6 C 0.312 3.688 7 O -0.478 6.478 8 N -0.358 5.358 9 C -0.020 4.020 10 C -0.111 4.111 11 H 0.111 0.889 12 C -0.203 4.203 13 C -0.110 4.110 14 H 0.089 0.911 15 C -0.057 4.057 16 N -0.323 5.323 17 C -0.065 4.065 18 C 0.222 3.778 19 O -0.513 6.513 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.094 0.906 23 C -0.210 4.210 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.193 1.193 28 H -0.200 1.200 29 C -0.020 4.020 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.112 0.888 45 H 0.068 0.932 46 H 0.156 0.844 47 H 0.126 0.874 48 H 0.086 0.914 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.088 0.912 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -33.511 5.083 0.900 33.906 hybrid contribution 1.164 -0.380 -1.036 1.604 sum -32.346 4.703 -0.136 32.687 Atomic orbital electron populations 1.22921 0.79272 1.03660 1.01153 1.87857 1.21729 1.29475 1.95691 1.22589 0.92243 0.84370 1.02024 1.21182 0.93999 0.96427 1.02671 1.21514 0.87878 0.98894 1.07369 1.21133 0.90870 0.82086 0.74733 1.90732 1.76304 1.28238 1.52525 1.49183 1.06957 1.07336 1.72335 1.22848 1.00138 0.78006 1.00989 1.22091 0.93162 0.95259 1.00586 0.88889 1.21917 1.02786 0.94176 1.01457 1.22059 0.95156 0.94729 0.99029 0.91061 1.22274 0.86985 0.96203 1.00245 1.60121 1.02829 1.07213 1.62140 1.21525 0.88323 0.96327 1.00356 1.21007 0.85623 0.88699 0.82512 1.90501 1.86490 1.22841 1.51512 1.41915 1.06300 1.16322 1.56359 1.19659 0.86832 0.98637 1.41493 0.90612 1.25998 1.01347 0.97769 0.95880 1.69664 1.27295 1.16755 1.42197 0.84955 0.77049 0.77811 0.78680 1.19671 1.19280 1.20016 1.22379 0.81022 0.98910 0.99644 0.92788 0.92784 0.89198 0.91225 0.91194 0.92775 0.92826 0.85580 0.85573 0.86913 0.89215 0.92018 0.90448 0.91847 0.88840 0.93249 0.84360 0.87378 0.91411 0.76858 0.91246 0.91165 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.43 -7.50 10.70 -148.98 -1.59 -9.09 16 3 C 0.06 0.75 5.94 71.98 0.43 1.18 16 4 C -0.10 -1.76 4.87 30.60 0.15 -1.61 16 5 C -0.12 -1.36 4.68 29.85 0.14 -1.22 16 6 C 0.52 11.76 7.91 87.66 0.69 12.45 16 7 O -0.60 -20.57 16.25 -3.02 -0.05 -20.62 16 8 N -0.63 -11.78 3.32 -807.52 -2.68 -14.46 16 9 C 0.10 0.91 6.47 86.53 0.56 1.47 16 10 C -0.09 -0.96 3.66 -9.88 -0.04 -1.00 16 11 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 12 C -0.15 -1.11 7.94 71.98 0.57 -0.54 16 13 C -0.09 -1.71 3.30 -9.88 -0.03 -1.74 16 14 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 15 C 0.07 1.46 3.88 86.30 0.33 1.79 16 16 N -0.69 -21.73 6.13 -517.95 -3.17 -24.90 16 17 C 0.07 2.26 6.17 85.56 0.53 2.79 16 18 C 0.43 21.10 7.82 87.66 0.69 21.78 16 19 O -0.63 -36.10 15.78 -3.05 -0.05 -36.15 16 20 N -0.57 -29.73 5.29 -306.99 -1.62 -31.35 16 21 C -0.34 -19.52 9.68 84.04 0.81 -18.70 16 22 H 0.08 4.72 7.16 -2.92 -0.02 4.70 16 23 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 24 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 25 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 29 C 0.10 2.41 5.82 86.51 0.50 2.92 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 36 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 37 H 0.13 0.71 7.95 -2.39 -0.02 0.69 16 38 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.11 0.31 7.30 -2.39 -0.02 0.29 16 40 H 0.09 0.61 7.83 -2.39 -0.02 0.59 16 41 H 0.06 0.50 6.85 -2.39 -0.02 0.49 16 42 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 43 H 0.06 0.57 6.71 -2.39 -0.02 0.55 16 44 H 0.09 1.69 6.58 -2.39 -0.02 1.67 16 45 H 0.05 0.87 6.89 -2.39 -0.02 0.85 16 46 H 0.34 11.76 7.68 -89.69 -0.69 11.07 16 47 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 48 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 49 H 0.40 19.38 7.90 -92.70 -0.73 18.65 16 50 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 51 H 0.07 1.59 7.78 -2.38 -0.02 1.57 16 52 H 0.05 1.53 7.89 -2.39 -0.02 1.51 16 Total: -1.00 -82.58 418.63 -0.31 -82.88 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -0.50 Total: 36.44 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 7.05 Total: 20.99 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -7.19 Total: -120.12 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: -1.69 Total: -65.86 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -82.58 -0.31 -82.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724572597.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.670 kcal (2) G-P(sol) polarization free energy of solvation -82.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds