Wall clock time and date at job start Wed Apr 1 2020 01:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99522 * 2 1 4 4 C 1.53001 * 109.47287 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47365 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47156 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99696 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00208 * 180.02562 * 6 5 4 9 9 C 1.47485 * 127.02864 * 0.02562 * 8 6 5 10 10 C 1.54007 * 107.08191 * 205.41110 * 9 8 6 11 11 H 1.09002 * 110.32949 * 239.80336 * 10 9 8 12 12 C 1.53000 * 110.32465 * 117.58802 * 10 9 8 13 13 C 1.54614 * 105.04342 * 358.69964 * 10 9 8 14 14 H 1.08994 * 110.74381 * 96.48603 * 13 10 9 15 15 C 1.53007 * 110.73891 * 219.81218 * 13 10 9 16 16 N 1.46892 * 109.47217 * 184.99735 * 15 13 10 17 17 C 1.46901 * 111.00336 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47605 * 180.02562 * 17 16 15 19 19 O 1.21300 * 119.99778 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00087 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99884 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00383 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99925 * 180.02562 * 21 20 18 24 24 N 1.31404 * 119.99919 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99950 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47375 * 90.00204 * 25 23 21 27 27 H 1.48502 * 109.47134 * 210.00606 * 25 23 21 28 28 H 1.48503 * 109.47206 * 330.00075 * 25 23 21 29 29 C 1.48114 * 127.03607 * 179.97438 * 8 6 5 30 30 H 1.09002 * 109.46969 * 299.99056 * 1 2 3 31 31 H 1.08988 * 109.47551 * 59.99914 * 1 2 3 32 32 H 1.09003 * 109.46890 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47160 * 60.00292 * 3 2 1 34 34 H 1.09000 * 109.47401 * 300.00272 * 3 2 1 35 35 H 1.09007 * 109.46647 * 60.00091 * 4 3 2 36 36 H 1.09000 * 109.46914 * 300.00316 * 4 3 2 37 37 H 1.09007 * 109.46981 * 60.00519 * 5 4 3 38 38 H 1.09000 * 109.47545 * 300.00153 * 5 4 3 39 39 H 1.09003 * 109.91439 * 86.05464 * 9 8 6 40 40 H 1.08996 * 109.91622 * 324.77487 * 9 8 6 41 41 H 1.09005 * 109.47215 * 61.45738 * 12 10 9 42 42 H 1.09004 * 109.46696 * 181.45502 * 12 10 9 43 43 H 1.08994 * 109.47338 * 301.45231 * 12 10 9 44 44 H 1.08995 * 109.46655 * 304.99964 * 15 13 10 45 45 H 1.09004 * 109.47090 * 64.99912 * 15 13 10 46 46 H 1.00902 * 110.99888 * 56.04610 * 16 15 13 47 47 H 1.09003 * 109.46705 * 300.00409 * 17 16 15 48 48 H 1.09007 * 109.46731 * 59.99921 * 17 16 15 49 49 H 0.96999 * 120.00053 * 0.02562 * 20 18 17 50 50 H 0.96998 * 120.00286 * 179.97438 * 24 23 21 51 51 H 1.08998 * 110.66152 * 259.18486 * 29 8 6 52 52 H 1.08999 * 110.65862 * 22.29762 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 6 4.1576 2.5826 -0.0013 6 6 5.6599 2.4637 -0.0013 7 8 6.1815 1.3688 -0.0013 8 7 6.4238 3.5741 -0.0013 9 6 5.9572 4.9732 -0.0008 10 6 7.0752 5.8232 -0.6327 11 1 7.4252 6.5749 0.0748 12 6 6.5748 6.4909 -1.9151 13 6 8.2075 4.8210 -0.9555 14 1 8.1543 4.5005 -1.9959 15 6 9.5758 5.4308 -0.6441 16 7 10.6331 4.5048 -1.0712 17 6 11.9640 5.0585 -0.7878 18 6 13.0204 4.0832 -1.2392 19 8 12.6966 3.0302 -1.7466 20 7 14.3250 4.3806 -1.0781 21 6 15.2861 3.4931 -1.4882 22 1 14.9978 2.5556 -1.9400 23 6 16.6312 3.7995 -1.3217 24 7 17.5524 2.9487 -1.7144 25 14 17.1299 5.4209 -0.5396 26 1 17.2431 5.2471 0.9309 27 1 18.4398 5.8535 -1.0893 28 1 16.1031 6.4513 -0.8386 29 6 7.9035 3.6390 -0.0008 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6884 1.8465 -0.8899 35 1 3.8566 0.6442 -0.8909 36 1 3.8574 0.6438 0.8891 37 1 3.8363 3.1237 0.8888 38 1 3.8355 3.1233 -0.8912 39 1 5.7732 5.3028 1.0218 40 1 5.0454 5.0607 -0.5915 41 1 5.7433 7.1548 -1.6785 42 1 7.3837 7.0673 -2.3640 43 1 6.2410 5.7262 -2.6165 44 1 9.6825 6.3752 -1.1776 45 1 9.6592 5.6077 0.4283 46 1 10.5385 4.2742 -2.0489 47 1 12.0870 6.0003 -1.3226 48 1 12.0642 5.2332 0.2835 49 1 14.5840 5.2223 -0.6713 50 1 18.4913 3.1626 -1.5985 51 1 8.2790 3.8472 1.0011 52 1 8.3292 2.7130 -0.3873 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724572599.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:33 Heat of formation + Delta-G solvation = -121.087475 kcal Electronic energy + Delta-G solvation = -29169.917386 eV Core-core repulsion = 24976.278470 eV Total energy + Delta-G solvation = -4193.638917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44135 -38.73164 -38.37422 -38.02209 -35.47138 -34.00165 -33.88678 -33.01806 -31.65859 -30.72842 -28.58863 -27.18460 -26.76503 -26.02494 -24.80582 -23.47920 -22.19233 -21.71835 -20.44010 -19.46521 -19.27023 -18.31009 -17.39996 -16.86669 -16.70065 -16.45149 -15.92083 -15.78931 -15.46847 -15.21902 -14.91013 -14.84672 -14.42221 -14.25447 -14.00593 -13.81921 -13.45329 -13.29345 -13.17627 -12.82203 -12.75964 -12.53993 -12.41390 -12.32121 -12.16093 -12.06045 -11.89083 -11.81659 -11.64442 -11.41900 -11.29245 -11.18278 -11.08830 -10.88014 -10.85115 -10.58917 -10.09711 -9.99232 -9.95952 -9.55794 -8.88291 -8.57992 -8.18347 -8.13392 -6.29413 -3.80830 2.45967 2.67179 3.02601 3.07535 3.15506 3.37216 3.75524 3.91664 4.11204 4.16223 4.23208 4.43369 4.54430 4.55815 4.67065 4.80675 4.82231 4.87299 4.90898 4.96523 4.98527 5.01270 5.05330 5.10112 5.15191 5.18482 5.23039 5.24794 5.26620 5.31246 5.51511 5.56565 5.59130 5.65701 5.71836 5.73694 5.80457 5.82968 5.87394 5.93951 5.94928 6.00372 6.20790 6.73720 7.06913 7.35007 7.55134 7.59901 7.99405 8.16571 8.61501 8.96935 9.44139 9.84663 10.83810 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.001655 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.281689 B =16917.284475 C =18001.382205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.062 3.938 4 C -0.106 4.106 5 C -0.132 4.132 6 C 0.530 3.470 7 O -0.532 6.532 8 N -0.626 5.626 9 C 0.105 3.895 10 C -0.102 4.102 11 H 0.088 0.912 12 C -0.143 4.143 13 C -0.094 4.094 14 H 0.085 0.915 15 C 0.070 3.930 16 N -0.669 5.669 17 C 0.049 3.951 18 C 0.449 3.551 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.118 3.882 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.032 0.968 45 H 0.074 0.926 46 H 0.351 0.649 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.073 0.927 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.983 10.896 4.917 35.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.015 4.015 4 C -0.144 4.144 5 C -0.172 4.172 6 C 0.318 3.682 7 O -0.408 6.408 8 N -0.361 5.361 9 C -0.019 4.019 10 C -0.122 4.122 11 H 0.106 0.894 12 C -0.201 4.201 13 C -0.113 4.113 14 H 0.103 0.897 15 C -0.060 4.060 16 N -0.301 5.301 17 C -0.084 4.084 18 C 0.235 3.765 19 O -0.444 6.444 20 N -0.231 5.231 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.004 4.004 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.092 0.908 46 H 0.171 0.829 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -32.665 8.879 5.125 34.236 hybrid contribution 0.494 2.428 -0.028 2.478 sum -32.170 11.307 5.096 34.478 Atomic orbital electron populations 1.22749 0.80964 1.02898 0.99906 1.87908 1.19722 1.27922 1.95394 1.22539 0.94071 0.84779 1.00076 1.21243 0.92116 0.95806 1.05255 1.21512 0.91983 0.99345 1.04336 1.20198 0.88926 0.82901 0.76130 1.90770 1.74889 1.25740 1.49415 1.48884 1.08122 1.05544 1.73546 1.22201 0.97750 0.81184 1.00736 1.22123 0.94773 0.97160 0.98144 0.89401 1.21856 1.01215 1.00480 0.96536 1.22360 0.93498 0.94864 1.00612 0.89655 1.21949 0.89768 0.93341 1.00926 1.60058 1.00507 1.42876 1.26695 1.21695 0.89356 0.95670 1.01663 1.19720 0.82932 0.88810 0.85058 1.90581 1.80980 1.25778 1.47106 1.42201 1.05600 1.19039 1.56228 1.19443 0.84972 1.01396 1.37582 0.86281 1.25035 0.95462 0.97906 0.97739 1.69620 1.00842 1.35374 1.46317 0.86667 0.79035 0.83406 0.80220 1.19610 1.20216 1.19575 1.22479 0.78459 1.00030 0.99397 0.94090 0.94064 0.89537 0.93286 0.93275 0.90100 0.90135 0.88884 0.88860 0.91423 0.90751 0.92405 0.92079 0.92402 0.94992 0.90753 0.82918 0.93816 0.89484 0.79726 0.91631 0.90837 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.61 10.70 -35.23 -0.38 -3.98 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.11 -0.92 4.87 -26.73 -0.13 -1.05 16 5 C -0.13 -0.93 4.78 -27.88 -0.13 -1.07 16 6 C 0.53 6.09 7.89 -10.98 -0.09 6.00 16 7 O -0.53 -8.70 16.19 5.56 0.09 -8.61 16 8 N -0.63 -6.22 3.29 -169.75 -0.56 -6.78 16 9 C 0.10 0.64 6.42 -2.98 -0.02 0.63 16 10 C -0.10 -0.64 3.17 -89.25 -0.28 -0.92 16 11 H 0.09 0.47 7.85 -51.93 -0.41 0.06 16 12 C -0.14 -0.78 8.89 37.16 0.33 -0.45 16 13 C -0.09 -0.86 2.77 -88.73 -0.25 -1.11 16 14 H 0.09 0.87 7.86 -51.93 -0.41 0.47 16 15 C 0.07 0.72 5.00 -3.82 -0.02 0.70 16 16 N -0.67 -9.87 6.05 -115.06 -0.70 -10.57 16 17 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 18 C 0.45 10.21 7.82 -10.99 -0.09 10.12 16 19 O -0.56 -15.30 15.78 5.54 0.09 -15.21 16 20 N -0.59 -14.13 5.09 -10.96 -0.06 -14.18 16 21 C -0.31 -8.72 10.16 -14.93 -0.15 -8.87 16 22 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.96 13.96 55.50 0.77 -25.19 16 25 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 29 C 0.12 1.35 6.45 -2.12 -0.01 1.34 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.19 8.14 -51.94 -0.42 -0.24 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.47 7.92 -51.93 -0.41 0.06 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.33 7.08 -51.93 -0.37 -0.03 16 41 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.72 7.99 -51.93 -0.42 0.30 16 46 H 0.35 5.48 8.43 -39.29 -0.33 5.15 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 1.25 8.14 -51.92 -0.42 0.82 16 49 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 50 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 51 H 0.07 0.83 7.94 -51.93 -0.41 0.41 16 52 H 0.09 1.39 7.85 -51.93 -0.41 0.99 16 LS Contribution 422.78 15.07 6.37 6.37 Total: -1.00 -36.59 422.78 -8.00 -44.59 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -9.29 Total: 9.82 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 0.37 Total: 9.06 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.54 Total: -56.72 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.20 Total: -27.80 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -36.59 -8.00 -44.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724572599.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.497 kcal (2) G-P(sol) polarization free energy of solvation -36.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds