Wall clock time and date at job start Wed Apr 1 2020 01:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99522 * 2 1 4 4 C 1.53001 * 109.47287 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47365 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47156 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99696 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00208 * 180.02562 * 6 5 4 9 9 C 1.47485 * 127.02864 * 0.02562 * 8 6 5 10 10 C 1.54007 * 107.08191 * 205.41110 * 9 8 6 11 11 H 1.09002 * 110.32949 * 239.80336 * 10 9 8 12 12 C 1.53000 * 110.32465 * 117.58802 * 10 9 8 13 13 C 1.54614 * 105.04342 * 358.69964 * 10 9 8 14 14 H 1.08994 * 110.74381 * 96.48603 * 13 10 9 15 15 C 1.53007 * 110.73891 * 219.81218 * 13 10 9 16 16 N 1.46892 * 109.47217 * 184.99735 * 15 13 10 17 17 C 1.46901 * 111.00336 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47605 * 180.02562 * 17 16 15 19 19 O 1.21300 * 119.99778 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00087 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99884 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00383 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99925 * 180.02562 * 21 20 18 24 24 N 1.31404 * 119.99919 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99950 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47375 * 90.00204 * 25 23 21 27 27 H 1.48502 * 109.47134 * 210.00606 * 25 23 21 28 28 H 1.48503 * 109.47206 * 330.00075 * 25 23 21 29 29 C 1.48114 * 127.03607 * 179.97438 * 8 6 5 30 30 H 1.09002 * 109.46969 * 299.99056 * 1 2 3 31 31 H 1.08988 * 109.47551 * 59.99914 * 1 2 3 32 32 H 1.09003 * 109.46890 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47160 * 60.00292 * 3 2 1 34 34 H 1.09000 * 109.47401 * 300.00272 * 3 2 1 35 35 H 1.09007 * 109.46647 * 60.00091 * 4 3 2 36 36 H 1.09000 * 109.46914 * 300.00316 * 4 3 2 37 37 H 1.09007 * 109.46981 * 60.00519 * 5 4 3 38 38 H 1.09000 * 109.47545 * 300.00153 * 5 4 3 39 39 H 1.09003 * 109.91439 * 86.05464 * 9 8 6 40 40 H 1.08996 * 109.91622 * 324.77487 * 9 8 6 41 41 H 1.09005 * 109.47215 * 61.45738 * 12 10 9 42 42 H 1.09004 * 109.46696 * 181.45502 * 12 10 9 43 43 H 1.08994 * 109.47338 * 301.45231 * 12 10 9 44 44 H 1.08995 * 109.46655 * 304.99964 * 15 13 10 45 45 H 1.09004 * 109.47090 * 64.99912 * 15 13 10 46 46 H 1.00902 * 110.99888 * 56.04610 * 16 15 13 47 47 H 1.09003 * 109.46705 * 300.00409 * 17 16 15 48 48 H 1.09007 * 109.46731 * 59.99921 * 17 16 15 49 49 H 0.96999 * 120.00053 * 0.02562 * 20 18 17 50 50 H 0.96998 * 120.00286 * 179.97438 * 24 23 21 51 51 H 1.08998 * 110.66152 * 259.18486 * 29 8 6 52 52 H 1.08999 * 110.65862 * 22.29762 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 6 4.1576 2.5826 -0.0013 6 6 5.6599 2.4637 -0.0013 7 8 6.1815 1.3688 -0.0013 8 7 6.4238 3.5741 -0.0013 9 6 5.9572 4.9732 -0.0008 10 6 7.0752 5.8232 -0.6327 11 1 7.4252 6.5749 0.0748 12 6 6.5748 6.4909 -1.9151 13 6 8.2075 4.8210 -0.9555 14 1 8.1543 4.5005 -1.9959 15 6 9.5758 5.4308 -0.6441 16 7 10.6331 4.5048 -1.0712 17 6 11.9640 5.0585 -0.7878 18 6 13.0204 4.0832 -1.2392 19 8 12.6966 3.0302 -1.7466 20 7 14.3250 4.3806 -1.0781 21 6 15.2861 3.4931 -1.4882 22 1 14.9978 2.5556 -1.9400 23 6 16.6312 3.7995 -1.3217 24 7 17.5524 2.9487 -1.7144 25 14 17.1299 5.4209 -0.5396 26 1 17.2431 5.2471 0.9309 27 1 18.4398 5.8535 -1.0893 28 1 16.1031 6.4513 -0.8386 29 6 7.9035 3.6390 -0.0008 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6884 1.8465 -0.8899 35 1 3.8566 0.6442 -0.8909 36 1 3.8574 0.6438 0.8891 37 1 3.8363 3.1237 0.8888 38 1 3.8355 3.1233 -0.8912 39 1 5.7732 5.3028 1.0218 40 1 5.0454 5.0607 -0.5915 41 1 5.7433 7.1548 -1.6785 42 1 7.3837 7.0673 -2.3640 43 1 6.2410 5.7262 -2.6165 44 1 9.6825 6.3752 -1.1776 45 1 9.6592 5.6077 0.4283 46 1 10.5385 4.2742 -2.0489 47 1 12.0870 6.0003 -1.3226 48 1 12.0642 5.2332 0.2835 49 1 14.5840 5.2223 -0.6713 50 1 18.4913 3.1626 -1.5985 51 1 8.2790 3.8472 1.0011 52 1 8.3292 2.7130 -0.3873 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724572599.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:32 Heat of formation + Delta-G solvation = -151.117118 kcal Electronic energy + Delta-G solvation = -29171.219569 eV Core-core repulsion = 24976.278470 eV Total energy + Delta-G solvation = -4194.941100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.23721 -40.29991 -39.31383 -38.75459 -36.66626 -35.86120 -34.68341 -33.82072 -33.69235 -31.57983 -29.37048 -28.30553 -27.30440 -26.85407 -26.01407 -24.77212 -22.91522 -22.40311 -21.40217 -21.04003 -20.31057 -20.00782 -18.17624 -17.89473 -17.41430 -17.32557 -17.08565 -16.85043 -16.64696 -16.28439 -15.88370 -15.76157 -15.50083 -15.27486 -15.10226 -14.83937 -14.69042 -14.33963 -14.24353 -14.09934 -13.85682 -13.47383 -13.28795 -13.15482 -13.08760 -12.98925 -12.84571 -12.65377 -12.60861 -12.41995 -12.36934 -11.98157 -11.97695 -11.92251 -11.75358 -11.54073 -11.52669 -11.51254 -10.91533 -10.60679 -10.44268 -10.25485 -9.69162 -9.27356 -8.41707 -6.03211 1.29732 1.36351 1.45058 1.61095 1.93770 1.95999 2.23316 2.72844 2.86979 3.14614 3.31954 3.57016 3.60647 3.79337 3.89019 3.96005 4.13138 4.16743 4.25208 4.31572 4.37078 4.40128 4.46231 4.49702 4.50009 4.52425 4.58062 4.58736 4.61910 4.63528 4.74506 4.75572 4.79314 4.86963 4.95946 4.98188 5.09148 5.10557 5.16140 5.19598 5.25168 5.38701 5.52318 5.57036 5.90632 6.07760 6.26638 6.38365 6.58138 6.59647 6.87843 7.15208 7.39455 7.97253 8.76268 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.001655 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.281689 B =16917.284475 C =18001.382205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.428 6.428 3 C 0.064 3.936 4 C -0.105 4.105 5 C -0.117 4.117 6 C 0.517 3.483 7 O -0.599 6.599 8 N -0.625 5.625 9 C 0.100 3.900 10 C -0.092 4.092 11 H 0.109 0.891 12 C -0.141 4.141 13 C -0.087 4.087 14 H 0.068 0.932 15 C 0.074 3.926 16 N -0.694 5.694 17 C 0.065 3.935 18 C 0.445 3.555 19 O -0.618 6.618 20 N -0.590 5.590 21 C -0.332 4.332 22 H 0.051 0.949 23 C -0.016 4.016 24 N -0.936 5.936 25 Si 0.968 3.032 26 H -0.257 1.257 27 H -0.275 1.275 28 H -0.228 1.228 29 C 0.114 3.886 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.088 0.912 46 H 0.341 0.659 47 H 0.080 0.920 48 H 0.116 0.884 49 H 0.391 0.609 50 H 0.279 0.721 51 H 0.076 0.924 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.577 16.725 6.671 39.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.348 6.348 3 C -0.012 4.012 4 C -0.143 4.143 5 C -0.156 4.156 6 C 0.308 3.692 7 O -0.480 6.480 8 N -0.358 5.358 9 C -0.022 4.022 10 C -0.111 4.111 11 H 0.128 0.872 12 C -0.198 4.198 13 C -0.107 4.107 14 H 0.087 0.913 15 C -0.054 4.054 16 N -0.326 5.326 17 C -0.067 4.067 18 C 0.233 3.767 19 O -0.503 6.503 20 N -0.232 5.232 21 C -0.461 4.461 22 H 0.069 0.931 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.788 3.212 26 H -0.182 1.182 27 H -0.200 1.200 28 H -0.151 1.151 29 C -0.008 4.008 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.107 0.893 46 H 0.160 0.840 47 H 0.098 0.902 48 H 0.134 0.866 49 H 0.227 0.773 50 H 0.089 0.911 51 H 0.094 0.906 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -35.309 14.782 6.890 38.894 hybrid contribution 1.257 0.464 -0.630 1.480 sum -34.053 15.246 6.260 37.831 Atomic orbital electron populations 1.22919 0.79265 1.03660 1.01161 1.87861 1.21746 1.29484 1.95691 1.22586 0.92206 0.84361 1.02018 1.21184 0.94039 0.96494 1.02606 1.21506 0.88077 0.98775 1.07248 1.21121 0.90895 0.82262 0.74953 1.90739 1.76335 1.28360 1.52566 1.49011 1.07387 1.07158 1.72262 1.22543 0.98577 0.78347 1.02714 1.22128 0.93224 0.96615 0.99145 0.87241 1.21846 1.01914 1.00400 0.95670 1.22278 0.94649 0.94851 0.98911 0.91309 1.22049 0.88301 0.93202 1.01881 1.60066 1.01159 1.45154 1.26252 1.21616 0.87345 0.94342 1.03421 1.21138 0.83696 0.89083 0.82773 1.90561 1.81966 1.28713 1.49028 1.42013 1.05317 1.19126 1.56734 1.19011 0.87062 1.00726 1.39350 0.93073 1.26166 0.94434 1.03224 0.97600 1.69812 1.01609 1.38532 1.47689 0.85321 0.79402 0.77360 0.79126 1.18178 1.19986 1.15129 1.22371 0.79840 0.98822 0.99806 0.92726 0.92810 0.89214 0.91107 0.91285 0.93003 0.92761 0.85538 0.85811 0.89095 0.88180 0.90170 0.92275 0.93468 0.92529 0.89328 0.84036 0.90188 0.86646 0.77348 0.91132 0.90629 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.43 -7.75 10.70 -148.98 -1.59 -9.34 16 3 C 0.06 0.80 5.94 71.98 0.43 1.22 16 4 C -0.10 -1.86 4.87 30.59 0.15 -1.71 16 5 C -0.12 -1.44 4.78 29.85 0.14 -1.30 16 6 C 0.52 12.09 7.89 87.66 0.69 12.78 16 7 O -0.60 -21.47 16.19 -3.03 -0.05 -21.52 16 8 N -0.63 -11.90 3.29 -809.37 -2.66 -14.57 16 9 C 0.10 0.84 6.42 86.53 0.56 1.39 16 10 C -0.09 -0.79 3.17 -9.90 -0.03 -0.82 16 11 H 0.11 0.56 7.85 -2.39 -0.02 0.55 16 12 C -0.14 -0.97 8.89 71.98 0.64 -0.33 16 13 C -0.09 -1.48 2.77 -9.57 -0.03 -1.51 16 14 H 0.07 1.41 7.86 -2.39 -0.02 1.39 16 15 C 0.07 1.31 5.00 86.31 0.43 1.74 16 16 N -0.69 -19.90 6.05 -517.93 -3.13 -23.04 16 17 C 0.06 1.92 6.17 85.56 0.53 2.45 16 18 C 0.44 20.43 7.82 87.66 0.69 21.12 16 19 O -0.62 -35.56 15.78 -3.09 -0.05 -35.61 16 20 N -0.59 -28.16 5.09 -306.99 -1.56 -29.72 16 21 C -0.33 -19.90 10.16 84.04 0.85 -19.04 16 22 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 23 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 24 N -0.94 -57.36 13.96 21.66 0.30 -57.05 16 25 Si 0.97 38.86 27.74 68.60 1.90 40.76 16 26 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.23 -7.56 6.52 99.48 0.65 -6.91 16 29 C 0.11 2.68 6.45 86.74 0.56 3.24 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.05 1.19 8.10 -2.38 -0.02 1.17 16 36 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 37 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.12 0.81 7.92 -2.39 -0.02 0.79 16 39 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.10 0.38 7.08 -2.39 -0.02 0.37 16 41 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 42 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.05 0.44 8.13 -2.39 -0.02 0.42 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.09 1.35 7.99 -2.38 -0.02 1.33 16 46 H 0.34 10.85 8.43 -89.69 -0.76 10.09 16 47 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 48 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 49 H 0.39 15.18 5.76 -92.71 -0.53 14.64 16 50 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.08 1.70 7.94 -2.39 -0.02 1.68 16 52 H 0.04 1.43 7.85 -2.39 -0.02 1.42 16 Total: -1.00 -92.71 422.78 0.04 -92.67 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.44 Total: 37.09 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 7.32 Total: 20.32 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -7.05 Total: -124.38 kcal Atomic # 8 Polarization: -64.78 SS G_CDS: -1.69 Total: -66.47 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.90 Total: 40.76 kcal Total: -92.71 0.04 -92.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724572599.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.447 kcal (2) G-P(sol) polarization free energy of solvation -92.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds