Wall clock time and date at job start Wed Apr 1 2020 01:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46971 * 2 1 4 4 C 1.52994 * 109.47334 * 120.00069 * 2 1 3 5 5 H 1.09007 * 109.47383 * 300.00380 * 4 2 1 6 6 C 1.53006 * 109.47139 * 59.99653 * 4 2 1 7 7 C 1.50701 * 109.47338 * 180.02562 * 4 2 1 8 8 O 1.21279 * 119.99585 * 334.87664 * 7 4 2 9 9 N 1.34777 * 120.00020 * 154.88116 * 7 4 2 10 10 C 1.47150 * 120.98359 * 355.31804 * 9 7 4 11 11 C 1.53292 * 108.38798 * 129.44681 * 10 9 7 12 12 O 1.42966 * 109.22147 * 52.29835 * 11 10 9 13 13 C 1.42956 * 114.16921 * 297.42651 * 12 11 10 14 14 H 1.09006 * 109.51225 * 302.65019 * 13 12 11 15 15 C 1.52999 * 109.55545 * 182.52827 * 13 12 11 16 16 N 1.46902 * 109.47262 * 65.12291 * 15 13 12 17 17 C 1.46896 * 111.00348 * 180.02562 * 16 15 13 18 18 C 1.50695 * 109.47248 * 180.02562 * 17 16 15 19 19 O 1.21293 * 120.00257 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99764 * 180.02562 * 18 17 16 21 21 C 1.37108 * 119.99697 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99754 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99762 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99819 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99848 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47262 * 60.00231 * 25 23 21 27 27 H 1.48500 * 109.47154 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47150 * 299.99938 * 25 23 21 29 29 C 1.47149 * 120.98138 * 175.30202 * 9 7 4 30 30 H 1.09011 * 109.47168 * 300.00192 * 1 2 3 31 31 H 1.08997 * 109.47452 * 59.99253 * 1 2 3 32 32 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46834 * 240.00465 * 2 1 3 34 34 H 1.09006 * 109.46933 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47252 * 299.99962 * 3 2 1 36 36 H 1.09000 * 109.46962 * 60.00543 * 3 2 1 37 37 H 1.08997 * 109.47003 * 184.62873 * 6 4 2 38 38 H 1.08996 * 109.47100 * 304.63662 * 6 4 2 39 39 H 1.09001 * 109.46457 * 64.62800 * 6 4 2 40 40 H 1.09004 * 109.68052 * 249.17341 * 10 9 7 41 41 H 1.09000 * 109.67971 * 9.68211 * 10 9 7 42 42 H 1.08991 * 109.51731 * 172.22751 * 11 10 9 43 43 H 1.08999 * 109.51229 * 292.33276 * 11 10 9 44 44 H 1.08993 * 109.47449 * 185.12359 * 15 13 12 45 45 H 1.08999 * 109.46977 * 305.12597 * 15 13 12 46 46 H 1.00904 * 110.99733 * 56.04553 * 16 15 13 47 47 H 1.09005 * 109.46812 * 300.00032 * 17 16 15 48 48 H 1.09003 * 109.47114 * 59.99363 * 17 16 15 49 49 H 0.96993 * 120.00507 * 359.97438 * 20 18 17 50 50 H 0.97000 * 119.99659 * 179.97438 * 24 23 21 51 51 H 1.08994 * 109.68721 * 110.82711 * 29 9 7 52 52 H 1.09004 * 109.71089 * 350.28924 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 6 3.5470 -0.7207 1.2495 8 8 4.1535 -0.6310 0.2031 9 7 4.2207 -0.8199 2.4126 10 6 3.5103 -0.8271 3.7012 11 6 4.0047 -2.0256 4.5192 12 8 5.4327 -1.9960 4.5816 13 6 6.0766 -2.1184 3.3111 14 1 5.7597 -3.0438 2.8300 15 6 7.5941 -2.1375 3.5059 16 7 7.9772 -3.3450 4.2498 17 6 9.4306 -3.3971 4.4565 18 6 9.7848 -4.6468 5.2205 19 8 8.9123 -5.4180 5.5599 20 7 11.0711 -4.9070 5.5276 21 6 11.3933 -6.0437 6.2232 22 1 10.6164 -6.7303 6.5254 23 6 12.7195 -6.3122 6.5394 24 7 13.6648 -5.4769 6.1712 25 14 13.1585 -7.8606 7.4877 26 1 12.7251 -9.0531 6.7163 27 1 14.6277 -7.9130 7.6970 28 1 12.4716 -7.8462 8.8042 29 6 5.6883 -0.9247 2.4313 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.8240 -2.6531 2.1777 38 1 0.4432 -2.1649 1.1662 39 1 1.9594 -2.7009 0.4035 40 1 3.7191 0.0968 4.2407 41 1 2.4378 -0.9170 3.5287 42 1 3.5950 -1.9719 5.5278 43 1 3.6795 -2.9505 4.0429 44 1 8.0853 -2.1391 2.5330 45 1 7.8997 -1.2537 4.0658 46 1 7.6479 -4.1769 3.7831 47 1 9.9348 -3.4072 3.4902 48 1 9.7485 -2.5219 5.0231 49 1 11.7688 -4.2901 5.2566 50 1 14.5905 -5.6642 6.3923 51 1 6.1165 -0.0107 2.8428 52 1 6.0588 -1.0797 1.4179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724819860.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:01 Heat of formation + Delta-G solvation = -121.106514 kcal Electronic energy + Delta-G solvation = -30156.471070 eV Core-core repulsion = 25962.831328 eV Total energy + Delta-G solvation = -4193.639742 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95554 -39.04680 -38.18386 -36.55596 -35.66633 -34.88239 -33.83030 -32.19141 -31.21764 -31.05126 -28.75905 -27.91209 -27.08886 -25.35022 -24.39093 -23.81874 -22.95534 -21.61801 -20.74231 -19.20581 -19.05798 -17.90875 -17.77740 -17.05113 -16.41350 -16.12916 -15.77837 -15.43947 -15.15886 -15.10440 -14.81335 -14.57872 -14.42518 -14.21255 -14.10715 -14.03199 -13.43728 -13.35678 -12.96525 -12.91697 -12.71273 -12.60208 -12.52243 -12.45667 -12.00594 -11.92395 -11.85081 -11.52286 -11.47505 -11.42257 -11.34501 -11.14815 -10.99223 -10.95328 -10.79784 -10.42049 -10.28392 -10.18612 -9.88633 -9.47009 -8.84441 -8.42351 -8.00731 -7.92319 -6.38707 -3.79456 2.28166 2.50296 3.22379 3.27689 3.32271 3.53256 3.94416 3.99020 4.06385 4.18703 4.26305 4.42924 4.50938 4.55035 4.71427 4.75100 4.84062 4.87417 4.95717 5.00941 5.03216 5.08545 5.16582 5.23894 5.25966 5.29655 5.31898 5.34666 5.37618 5.43639 5.46220 5.50192 5.54970 5.57315 5.65881 5.78794 5.83236 5.84828 5.95834 5.95914 6.01590 6.05054 6.29773 6.98848 7.02374 7.23330 7.57840 7.68011 7.82225 8.09362 8.64806 9.20911 9.57684 10.09512 10.79027 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.001685 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.751568 B =16608.546376 C =16879.778943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.151 4.151 4 C -0.107 4.107 5 H 0.092 0.908 6 C -0.146 4.146 7 C 0.523 3.477 8 O -0.536 6.536 9 N -0.615 5.615 10 C 0.068 3.932 11 C 0.046 3.954 12 O -0.351 6.351 13 C 0.085 3.915 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.660 5.660 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.083 3.917 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.083 0.917 46 H 0.348 0.652 47 H 0.043 0.957 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.078 0.922 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.722 14.599 -10.638 30.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 C -0.209 4.209 4 C -0.129 4.129 5 H 0.110 0.890 6 C -0.204 4.204 7 C 0.312 3.688 8 O -0.413 6.413 9 N -0.349 5.349 10 C -0.055 4.055 11 C -0.032 4.032 12 O -0.268 6.268 13 C 0.025 3.975 14 H 0.080 0.920 15 C -0.062 4.062 16 N -0.292 5.292 17 C -0.081 4.081 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.040 4.040 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.167 0.833 47 H 0.061 0.939 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.096 0.904 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.782 14.411 -10.154 30.413 hybrid contribution 0.932 -0.528 -0.660 1.258 sum -23.850 13.884 -10.813 29.640 Atomic orbital electron populations 1.21922 0.94688 1.02020 1.02000 1.20959 0.95444 0.96327 0.97118 1.21896 1.02054 0.95412 1.01505 1.21441 0.91448 0.99022 1.00939 0.89004 1.21833 1.02091 0.93603 1.02826 1.20689 0.90081 0.75164 0.82858 1.90688 1.70258 1.49288 1.31019 1.48165 1.07120 1.73477 1.06183 1.22596 0.97707 1.00710 0.84480 1.22950 0.82865 0.96247 1.01153 1.88175 1.16957 1.93901 1.27811 1.22460 0.93704 0.96531 0.84771 0.91984 1.21903 0.91634 0.95757 0.96940 1.59955 1.12288 1.04060 1.52897 1.21678 0.88344 0.99041 0.99087 1.19797 0.83576 0.88233 0.85677 1.90523 1.47835 1.50273 1.57991 1.41854 1.05994 1.22483 1.49782 1.19661 0.93039 0.99597 1.30625 0.87990 1.25256 0.95310 0.99200 0.98179 1.69608 1.00991 1.36862 1.46917 0.85912 0.77080 0.81268 0.79910 1.19959 1.21001 1.19900 1.22295 0.79918 0.99399 1.02387 0.92636 0.92335 0.92168 0.90011 0.91929 0.92464 0.93083 0.92093 0.90717 0.91792 0.90258 0.88697 0.87487 0.92710 0.93725 0.89884 0.83306 0.93922 0.89481 0.77458 0.91860 0.90420 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 8.85 37.16 0.33 -0.41 16 2 C -0.08 -0.56 2.14 -90.62 -0.19 -0.76 16 3 C -0.15 -1.13 8.91 37.16 0.33 -0.80 16 4 C -0.11 -0.74 1.49 -91.77 -0.14 -0.88 16 5 H 0.09 0.48 6.35 -51.93 -0.33 0.15 16 6 C -0.15 -0.87 8.86 37.16 0.33 -0.54 16 7 C 0.52 5.29 6.01 -10.98 -0.07 5.22 16 8 O -0.54 -7.28 14.51 5.56 0.08 -7.20 16 9 N -0.62 -5.71 3.02 -172.28 -0.52 -6.23 16 10 C 0.07 0.47 6.45 -3.54 -0.02 0.44 16 11 C 0.05 0.39 6.99 37.31 0.26 0.65 16 12 O -0.35 -4.42 10.34 -35.23 -0.36 -4.78 16 13 C 0.08 0.97 2.95 -26.58 -0.08 0.89 16 14 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 15 C 0.07 0.85 5.36 -3.82 -0.02 0.83 16 16 N -0.66 -11.04 6.08 -115.06 -0.70 -11.74 16 17 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 18 C 0.44 10.66 7.82 -10.99 -0.09 10.57 16 19 O -0.58 -16.16 15.78 5.55 0.09 -16.08 16 20 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 21 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 C 0.08 0.85 5.91 -3.53 -0.02 0.83 16 30 H 0.05 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.26 6.33 -51.93 -0.33 -0.06 16 33 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 34 H 0.06 0.61 6.46 -51.93 -0.34 0.28 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.34 7.81 -51.93 -0.41 -0.07 16 38 H 0.07 0.32 6.19 -51.93 -0.32 0.00 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.42 5.22 -51.93 -0.27 0.15 16 42 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.35 6.00 8.43 -39.29 -0.33 5.67 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 49 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 50 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 51 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 52 H 0.10 1.10 7.12 -51.93 -0.37 0.73 16 LS Contribution 411.13 15.07 6.20 6.20 Total: -1.00 -34.42 411.13 -8.08 -42.50 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -8.85 Total: 10.91 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 0.35 Total: 8.82 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.55 Total: -56.62 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.20 Total: -28.06 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.42 -8.08 -42.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724819860.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.608 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds