Wall clock time and date at job start Wed Apr 1 2020 01:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46971 * 2 1 4 4 C 1.52994 * 109.47334 * 120.00069 * 2 1 3 5 5 H 1.09007 * 109.47383 * 300.00380 * 4 2 1 6 6 C 1.53006 * 109.47139 * 59.99653 * 4 2 1 7 7 C 1.50701 * 109.47338 * 180.02562 * 4 2 1 8 8 O 1.21279 * 119.99585 * 334.87664 * 7 4 2 9 9 N 1.34777 * 120.00020 * 154.88116 * 7 4 2 10 10 C 1.47150 * 120.98359 * 355.31804 * 9 7 4 11 11 C 1.53292 * 108.38798 * 129.44681 * 10 9 7 12 12 O 1.42966 * 109.22147 * 52.29835 * 11 10 9 13 13 C 1.42956 * 114.16921 * 297.42651 * 12 11 10 14 14 H 1.09006 * 109.51225 * 302.65019 * 13 12 11 15 15 C 1.52999 * 109.55545 * 182.52827 * 13 12 11 16 16 N 1.46902 * 109.47262 * 65.12291 * 15 13 12 17 17 C 1.46896 * 111.00348 * 180.02562 * 16 15 13 18 18 C 1.50695 * 109.47248 * 180.02562 * 17 16 15 19 19 O 1.21293 * 120.00257 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99764 * 180.02562 * 18 17 16 21 21 C 1.37108 * 119.99697 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99754 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99762 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99819 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99848 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47262 * 60.00231 * 25 23 21 27 27 H 1.48500 * 109.47154 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47150 * 299.99938 * 25 23 21 29 29 C 1.47149 * 120.98138 * 175.30202 * 9 7 4 30 30 H 1.09011 * 109.47168 * 300.00192 * 1 2 3 31 31 H 1.08997 * 109.47452 * 59.99253 * 1 2 3 32 32 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46834 * 240.00465 * 2 1 3 34 34 H 1.09006 * 109.46933 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47252 * 299.99962 * 3 2 1 36 36 H 1.09000 * 109.46962 * 60.00543 * 3 2 1 37 37 H 1.08997 * 109.47003 * 184.62873 * 6 4 2 38 38 H 1.08996 * 109.47100 * 304.63662 * 6 4 2 39 39 H 1.09001 * 109.46457 * 64.62800 * 6 4 2 40 40 H 1.09004 * 109.68052 * 249.17341 * 10 9 7 41 41 H 1.09000 * 109.67971 * 9.68211 * 10 9 7 42 42 H 1.08991 * 109.51731 * 172.22751 * 11 10 9 43 43 H 1.08999 * 109.51229 * 292.33276 * 11 10 9 44 44 H 1.08993 * 109.47449 * 185.12359 * 15 13 12 45 45 H 1.08999 * 109.46977 * 305.12597 * 15 13 12 46 46 H 1.00904 * 110.99733 * 56.04553 * 16 15 13 47 47 H 1.09005 * 109.46812 * 300.00032 * 17 16 15 48 48 H 1.09003 * 109.47114 * 59.99363 * 17 16 15 49 49 H 0.96993 * 120.00507 * 359.97438 * 20 18 17 50 50 H 0.97000 * 119.99659 * 179.97438 * 24 23 21 51 51 H 1.08994 * 109.68721 * 110.82711 * 29 9 7 52 52 H 1.09004 * 109.71089 * 350.28924 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 6 3.5470 -0.7207 1.2495 8 8 4.1535 -0.6310 0.2031 9 7 4.2207 -0.8199 2.4126 10 6 3.5103 -0.8271 3.7012 11 6 4.0047 -2.0256 4.5192 12 8 5.4327 -1.9960 4.5816 13 6 6.0766 -2.1184 3.3111 14 1 5.7597 -3.0438 2.8300 15 6 7.5941 -2.1375 3.5059 16 7 7.9772 -3.3450 4.2498 17 6 9.4306 -3.3971 4.4565 18 6 9.7848 -4.6468 5.2205 19 8 8.9123 -5.4180 5.5599 20 7 11.0711 -4.9070 5.5276 21 6 11.3933 -6.0437 6.2232 22 1 10.6164 -6.7303 6.5254 23 6 12.7195 -6.3122 6.5394 24 7 13.6648 -5.4769 6.1712 25 14 13.1585 -7.8606 7.4877 26 1 12.7251 -9.0531 6.7163 27 1 14.6277 -7.9130 7.6970 28 1 12.4716 -7.8462 8.8042 29 6 5.6883 -0.9247 2.4313 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.8240 -2.6531 2.1777 38 1 0.4432 -2.1649 1.1662 39 1 1.9594 -2.7009 0.4035 40 1 3.7191 0.0968 4.2407 41 1 2.4378 -0.9170 3.5287 42 1 3.5950 -1.9719 5.5278 43 1 3.6795 -2.9505 4.0429 44 1 8.0853 -2.1391 2.5330 45 1 7.8997 -1.2537 4.0658 46 1 7.6479 -4.1769 3.7831 47 1 9.9348 -3.4072 3.4902 48 1 9.7485 -2.5219 5.0231 49 1 11.7688 -4.2901 5.2566 50 1 14.5905 -5.6642 6.3923 51 1 6.1165 -0.0107 2.8428 52 1 6.0588 -1.0797 1.4179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724819860.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:00 Heat of formation + Delta-G solvation = -146.998193 kcal Electronic energy + Delta-G solvation = -30157.593817 eV Core-core repulsion = 25962.831328 eV Total energy + Delta-G solvation = -4194.762490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.70400 -40.20777 -39.73972 -37.18228 -36.89829 -35.92252 -35.68842 -33.33832 -33.00834 -31.69403 -29.68630 -28.73007 -28.00890 -26.76662 -25.36729 -24.79492 -23.90747 -22.51580 -21.41991 -21.03560 -19.90799 -19.72699 -18.54974 -18.06656 -17.65337 -17.18569 -16.81859 -16.51930 -16.38899 -16.23866 -15.93422 -15.76275 -15.41268 -15.29412 -14.98610 -14.87003 -14.80642 -14.55240 -14.34254 -13.63987 -13.55557 -13.43096 -13.29453 -13.16488 -13.10183 -13.05546 -12.90372 -12.81277 -12.67497 -12.43191 -12.42875 -12.23035 -12.11928 -11.94668 -11.73181 -11.59418 -11.50166 -11.43645 -11.13857 -10.64363 -10.35550 -10.01616 -9.62364 -9.31776 -8.46242 -5.95278 1.40285 1.41949 1.52574 1.53307 1.79562 2.05322 2.29558 2.74126 2.87265 3.20820 3.38425 3.47395 3.66663 3.77939 3.87741 3.90399 3.96172 4.02636 4.15295 4.22789 4.27701 4.32267 4.40543 4.45478 4.49633 4.50688 4.55998 4.58723 4.58893 4.65488 4.75891 4.79556 4.82932 4.85973 4.88761 4.95506 5.01607 5.05270 5.17722 5.24768 5.32697 5.40756 5.44157 5.50543 5.85304 6.07286 6.21582 6.28229 6.38806 6.60388 7.07202 7.12526 7.56107 8.11649 8.70879 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.001685 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.751568 B =16608.546376 C =16879.778943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.149 4.149 4 C -0.102 4.102 5 H 0.118 0.882 6 C -0.144 4.144 7 C 0.517 3.483 8 O -0.579 6.579 9 N -0.616 5.616 10 C 0.071 3.929 11 C 0.039 3.961 12 O -0.379 6.379 13 C 0.093 3.907 14 H 0.051 0.949 15 C 0.070 3.930 16 N -0.676 5.676 17 C 0.066 3.934 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.272 1.272 29 C 0.089 3.911 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.341 0.659 47 H 0.069 0.931 48 H 0.105 0.895 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.085 0.915 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.144 15.484 -10.058 32.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.206 4.206 4 C -0.123 4.123 5 H 0.136 0.864 6 C -0.201 4.201 7 C 0.308 3.692 8 O -0.459 6.459 9 N -0.350 5.350 10 C -0.051 4.051 11 C -0.038 4.038 12 O -0.297 6.297 13 C 0.034 3.966 14 H 0.069 0.931 15 C -0.060 4.060 16 N -0.309 5.309 17 C -0.067 4.067 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.197 1.197 29 C -0.035 4.035 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.160 0.840 47 H 0.086 0.914 48 H 0.123 0.877 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.103 0.897 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -26.210 15.330 -9.568 31.836 hybrid contribution 1.337 -0.772 -0.849 1.762 sum -24.873 14.558 -10.417 30.645 Atomic orbital electron populations 1.21886 0.92617 1.02819 1.02779 1.20944 0.97039 0.95647 0.96235 1.21867 1.00192 0.96089 1.02459 1.21505 0.88891 0.99975 1.01921 0.86378 1.21848 1.03322 0.92596 1.02333 1.21339 0.91447 0.74136 0.82297 1.90667 1.71338 1.51274 1.32591 1.48292 1.06815 1.72796 1.07052 1.22748 0.99002 1.00328 0.82973 1.23189 0.80996 0.96988 1.02636 1.88124 1.19247 1.94072 1.28302 1.22311 0.93005 0.96564 0.84762 0.93083 1.21983 0.92597 0.93955 0.97428 1.59948 1.11303 1.05239 1.54366 1.21537 0.89650 0.95994 0.99470 1.20868 0.82483 0.89436 0.84735 1.90488 1.48815 1.52221 1.59480 1.41921 1.06857 1.22156 1.50047 1.19649 0.93304 1.00822 1.32839 0.90344 1.26051 0.94666 1.02063 0.98455 1.69669 1.01370 1.38000 1.47007 0.84973 0.77406 0.77469 0.78379 1.19703 1.19412 1.19740 1.22135 0.80972 0.99059 1.01347 0.91195 0.92248 0.91357 0.92528 0.94728 0.92117 0.91527 0.91431 0.88506 0.93755 0.89226 0.85762 0.85691 0.92924 0.91886 0.89273 0.84035 0.91368 0.87707 0.76935 0.91279 0.89666 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.85 71.98 0.64 -0.45 16 2 C -0.08 -1.04 2.14 -10.79 -0.02 -1.06 16 3 C -0.15 -2.11 8.91 71.98 0.64 -1.47 16 4 C -0.10 -1.22 1.49 -11.54 -0.02 -1.24 16 5 H 0.12 0.79 6.35 -2.38 -0.02 0.78 16 6 C -0.14 -1.43 8.86 71.98 0.64 -0.80 16 7 C 0.52 10.19 6.01 87.66 0.53 10.71 16 8 O -0.58 -16.27 14.51 -3.03 -0.04 -16.31 16 9 N -0.62 -10.77 3.02 -817.37 -2.47 -13.23 16 10 C 0.07 0.80 6.45 86.35 0.56 1.36 16 11 C 0.04 0.60 6.99 72.08 0.50 1.11 16 12 O -0.38 -9.20 10.34 -148.98 -1.54 -10.74 16 13 C 0.09 2.09 2.95 30.69 0.09 2.18 16 14 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 15 C 0.07 1.68 5.36 86.30 0.46 2.14 16 16 N -0.68 -22.35 6.08 -517.95 -3.15 -25.50 16 17 C 0.07 2.31 6.17 85.56 0.53 2.84 16 18 C 0.44 21.36 7.82 87.66 0.69 22.05 16 19 O -0.62 -35.54 15.78 -3.07 -0.05 -35.59 16 20 N -0.57 -29.96 5.29 -306.98 -1.62 -31.58 16 21 C -0.34 -19.45 9.68 84.04 0.81 -18.63 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -50.08 13.05 21.66 0.28 -49.80 16 25 Si 0.99 43.37 29.55 68.60 2.03 45.39 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 29 C 0.09 1.76 5.91 86.35 0.51 2.27 16 30 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.41 6.33 -2.39 -0.02 0.40 16 33 H 0.06 1.02 7.87 -2.39 -0.02 1.00 16 34 H 0.03 0.68 6.46 -2.38 -0.02 0.67 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.59 7.81 -2.39 -0.02 0.57 16 38 H 0.10 0.55 6.19 -2.39 -0.01 0.53 16 39 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.12 0.65 5.22 -2.39 -0.01 0.64 16 42 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.34 11.90 8.43 -89.69 -0.76 11.14 16 47 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 48 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 49 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 50 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 51 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.09 1.98 7.12 -2.39 -0.02 1.96 16 Total: -1.00 -76.63 411.13 -0.10 -76.73 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: -0.56 Total: 39.83 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 7.02 Total: 20.80 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -6.96 Total: -120.11 kcal Atomic # 8 Polarization: -61.01 SS G_CDS: -1.63 Total: -62.64 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -76.63 -0.10 -76.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724819860.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.268 kcal (2) G-P(sol) polarization free energy of solvation -76.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds