Wall clock time and date at job start Wed Apr 1 2020 01:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00031 * 2 1 4 4 C 1.52997 * 109.46885 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47016 * 60.00208 * 4 3 2 6 6 C 1.53001 * 109.47313 * 300.00015 * 4 3 2 7 7 C 1.50696 * 109.47017 * 180.02562 * 4 3 2 8 8 O 1.21285 * 120.00286 * 350.52579 * 7 4 3 9 9 N 1.34780 * 120.00043 * 170.80775 * 7 4 3 10 10 C 1.47420 * 125.64902 * 3.91237 * 9 7 4 11 11 C 1.55122 * 104.72544 * 155.82128 * 10 9 7 12 12 H 1.08998 * 110.94346 * 155.29216 * 11 10 9 13 13 C 1.53001 * 111.19135 * 279.19493 * 11 10 9 14 14 C 1.55163 * 101.48601 * 37.29343 * 11 10 9 15 15 H 1.08999 * 110.86931 * 82.76887 * 14 11 10 16 16 N 1.46899 * 110.72050 * 205.97198 * 14 11 10 17 17 C 1.46901 * 110.99715 * 199.97919 * 16 14 11 18 18 C 1.50705 * 109.46798 * 180.02562 * 17 16 14 19 19 O 1.21286 * 120.00232 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99730 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00013 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99798 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99826 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99738 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00258 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47465 * 89.99585 * 25 23 21 27 27 H 1.48506 * 109.47092 * 209.99447 * 25 23 21 28 28 H 1.48504 * 109.47298 * 329.99624 * 25 23 21 29 29 C 1.47024 * 125.64597 * 184.22533 * 9 7 4 30 30 H 1.09010 * 109.46841 * 300.00106 * 1 2 3 31 31 H 1.09003 * 109.47003 * 59.99325 * 1 2 3 32 32 H 1.08989 * 109.47403 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47064 * 60.00508 * 3 2 1 34 34 H 1.08993 * 109.46972 * 300.00304 * 3 2 1 35 35 H 1.08997 * 109.46844 * 187.60638 * 5 4 3 36 36 H 1.08994 * 109.46988 * 307.60322 * 5 4 3 37 37 H 1.08997 * 109.47488 * 67.60782 * 5 4 3 38 38 H 1.09000 * 109.47519 * 299.99958 * 6 4 3 39 39 H 1.09002 * 109.47032 * 60.00131 * 6 4 3 40 40 H 1.08996 * 109.47203 * 179.97438 * 6 4 3 41 41 H 1.09005 * 110.36540 * 274.74879 * 10 9 7 42 42 H 1.09005 * 110.36582 * 37.06985 * 10 9 7 43 43 H 1.09007 * 109.47420 * 172.18644 * 13 11 10 44 44 H 1.09007 * 109.46680 * 292.18258 * 13 11 10 45 45 H 1.09000 * 109.47405 * 52.18207 * 13 11 10 46 46 H 1.00897 * 111.00249 * 76.02622 * 16 14 11 47 47 H 1.09001 * 109.47121 * 299.99383 * 17 16 14 48 48 H 1.08990 * 109.47320 * 59.99841 * 17 16 14 49 49 H 0.97000 * 120.00214 * 359.97438 * 20 18 17 50 50 H 0.96995 * 119.99914 * 180.02562 * 24 23 21 51 51 H 1.08998 * 109.88493 * 300.43483 * 29 9 7 52 52 H 1.08998 * 109.88556 * 61.44750 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4251 -1.2483 6 6 3.9864 0.4255 1.2502 7 6 4.1484 2.5613 0.0013 8 8 3.4488 3.5368 -0.1717 9 7 5.4751 2.7082 0.1884 10 6 6.4506 1.6110 0.3222 11 6 7.8054 2.2336 -0.1058 12 1 8.6405 1.6960 0.3433 13 6 7.9389 2.2738 -1.6295 14 6 7.6862 3.6655 0.4799 15 1 7.9588 3.6773 1.5351 16 7 8.5170 4.6088 -0.2803 17 6 8.7938 5.8184 0.5061 18 6 9.6459 6.7605 -0.3048 19 8 9.9893 6.4543 -1.4270 20 7 10.0264 7.9435 0.2172 21 6 10.8021 8.8004 -0.5202 22 1 11.1085 8.5273 -1.5191 23 6 11.1939 10.0201 0.0177 24 7 11.9378 10.8412 -0.6889 25 14 10.6644 10.4921 1.7457 26 1 11.6788 10.0180 2.7212 27 1 10.5401 11.9690 1.8394 28 1 9.3534 9.8646 2.0506 29 6 6.1881 3.9892 0.2993 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0275 -0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 5.0560 0.2208 -1.1824 36 1 3.4413 -0.5155 -1.3190 37 1 3.7869 1.0290 -2.1333 38 1 3.6645 0.9666 2.1400 39 1 3.5431 -0.5702 1.2502 40 1 5.0729 0.3390 1.2504 41 1 6.4974 1.2690 1.3561 42 1 6.1868 0.7860 -0.3396 43 1 8.8310 2.8380 -1.9014 44 1 8.0208 1.2571 -2.0139 45 1 7.0599 2.7549 -2.0587 46 1 8.0853 4.8417 -1.1620 47 1 7.8542 6.3081 0.7622 48 1 9.3218 5.5451 1.4195 49 1 9.7515 8.1886 1.1145 50 1 12.2116 11.6925 -0.3133 51 1 6.0421 4.5745 -0.6085 52 1 5.8200 4.5449 1.1617 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724936499.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:21 Heat of formation + Delta-G solvation = -100.484268 kcal Electronic energy + Delta-G solvation = -30823.567900 eV Core-core repulsion = 26630.822405 eV Total energy + Delta-G solvation = -4192.745494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04953 -39.11420 -38.32386 -37.79564 -35.50390 -34.59319 -33.83535 -32.23619 -31.65835 -29.20615 -27.79161 -27.74614 -27.07325 -26.32090 -25.92365 -24.22685 -23.25750 -21.46144 -20.00950 -19.49363 -19.29556 -18.40245 -17.25796 -16.64322 -16.48425 -16.26266 -16.15353 -15.53546 -15.50199 -15.01080 -14.82343 -14.71768 -14.64297 -14.03906 -13.79927 -13.68918 -13.51446 -13.32802 -12.99838 -12.91696 -12.66266 -12.58220 -12.50306 -12.43793 -12.22318 -12.03811 -12.00118 -11.82774 -11.76000 -11.45690 -11.33714 -11.19019 -11.06084 -10.93301 -10.67317 -10.60126 -10.05629 -9.98706 -9.91893 -9.58749 -8.91696 -8.62833 -8.25066 -8.18530 -6.32252 -3.83795 2.34663 2.54008 3.01813 3.05979 3.14460 3.43229 3.71551 3.95415 4.06346 4.09573 4.23628 4.31920 4.41482 4.52692 4.75522 4.78434 4.87436 4.89756 4.92216 4.95289 4.99479 5.06952 5.20593 5.20928 5.22090 5.26433 5.33746 5.39014 5.41391 5.45061 5.51835 5.53640 5.58231 5.61129 5.67966 5.75876 5.81219 5.84517 5.90340 5.92263 6.02838 6.08477 6.36567 6.72018 6.99066 7.21920 7.44225 7.56482 7.87046 8.12929 8.57961 8.93518 9.40925 9.80433 10.80794 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021978 B = 0.002058 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.699872 B =13602.786680 C =14196.824190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.086 3.914 4 C -0.074 4.074 5 C -0.143 4.143 6 C -0.151 4.151 7 C 0.540 3.460 8 O -0.541 6.541 9 N -0.606 5.606 10 C 0.088 3.912 11 C -0.092 4.092 12 H 0.096 0.904 13 C -0.143 4.143 14 C 0.081 3.919 15 H 0.096 0.904 16 N -0.649 5.649 17 C 0.044 3.956 18 C 0.449 3.551 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.077 3.923 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.355 0.645 47 H 0.046 0.954 48 H 0.090 0.910 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.070 0.930 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.569 -24.530 6.667 31.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.009 3.991 4 C -0.077 4.077 5 C -0.200 4.200 6 C -0.208 4.208 7 C 0.328 3.672 8 O -0.418 6.418 9 N -0.340 5.340 10 C -0.034 4.034 11 C -0.111 4.111 12 H 0.114 0.886 13 C -0.200 4.200 14 C -0.031 4.031 15 H 0.114 0.886 16 N -0.281 5.281 17 C -0.089 4.089 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.048 4.048 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.177 0.823 47 H 0.064 0.936 48 H 0.108 0.892 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.089 0.911 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.952 -24.441 5.928 30.900 hybrid contribution -1.473 1.425 1.468 2.521 sum -19.425 -23.016 7.396 31.012 Atomic orbital electron populations 1.22734 0.80729 1.02699 1.00197 1.87786 1.19783 1.27667 1.95516 1.22197 0.91110 0.84245 1.01579 1.20613 0.94906 0.92994 0.99219 1.21938 1.01885 1.00954 0.95193 1.22097 1.02503 1.01033 0.95180 1.20072 0.80587 0.90647 0.75927 1.90724 1.60458 1.41252 1.49391 1.48240 1.05930 1.08168 1.71693 1.23002 0.88296 0.90666 1.01437 1.22424 0.95918 0.94982 0.97786 0.88563 1.21674 1.03295 1.01679 0.93377 1.22726 0.88253 0.93394 0.98735 0.88621 1.60225 1.48150 1.13519 1.06245 1.21795 0.98797 0.90929 0.97358 1.19662 0.85565 0.82944 0.88323 1.90568 1.58772 1.75483 1.19833 1.42203 1.47946 1.16773 1.15968 1.19430 1.25938 0.96756 1.01277 0.86259 1.25043 0.96952 0.95897 0.98266 1.69622 1.35305 1.10022 1.37089 0.86670 0.78964 0.79158 0.84573 1.19583 1.20183 1.19533 1.22914 0.93445 0.86225 1.02186 0.94044 0.93975 0.89515 0.92712 0.92209 0.91323 0.90251 0.92187 0.92417 0.90525 0.90866 0.90665 0.89284 0.89959 0.92880 0.93158 0.82340 0.93565 0.89226 0.79685 0.91599 0.91134 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.36 9.23 -35.23 -0.33 -3.69 16 3 C 0.09 0.81 4.15 37.16 0.15 0.96 16 4 C -0.07 -0.66 0.58 -155.66 -0.09 -0.75 16 5 C -0.14 -1.08 8.25 37.16 0.31 -0.78 16 6 C -0.15 -1.07 8.02 37.16 0.30 -0.77 16 7 C 0.54 6.34 6.57 -10.99 -0.07 6.26 16 8 O -0.54 -8.49 16.31 5.55 0.09 -8.39 16 9 N -0.61 -6.16 3.28 -170.38 -0.56 -6.71 16 10 C 0.09 0.64 4.38 -2.42 -0.01 0.63 16 11 C -0.09 -0.78 3.63 -88.35 -0.32 -1.10 16 12 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 13 C -0.14 -1.39 8.43 37.16 0.31 -1.07 16 14 C 0.08 0.83 3.03 -65.87 -0.20 0.63 16 15 H 0.10 0.89 7.89 -51.93 -0.41 0.48 16 16 N -0.65 -9.11 4.94 -106.05 -0.52 -9.64 16 17 C 0.04 0.68 6.02 -4.97 -0.03 0.65 16 18 C 0.45 9.94 7.82 -10.98 -0.09 9.86 16 19 O -0.56 -14.83 15.78 5.55 0.09 -14.74 16 20 N -0.59 -13.87 5.09 -10.96 -0.06 -13.92 16 21 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 22 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 25 Si 0.88 19.32 27.74 -169.99 -4.71 14.60 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 29 C 0.08 0.86 6.20 -3.06 -0.02 0.85 16 30 H 0.04 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.62 8.00 -51.93 -0.42 0.20 16 35 H 0.07 0.43 5.10 -51.93 -0.26 0.17 16 36 H 0.08 0.57 7.46 -51.93 -0.39 0.18 16 37 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.52 7.68 -51.93 -0.40 0.12 16 40 H 0.07 0.42 4.19 -51.93 -0.22 0.20 16 41 H 0.08 0.44 6.90 -51.93 -0.36 0.08 16 42 H 0.09 0.55 4.41 -51.93 -0.23 0.32 16 43 H 0.08 0.99 7.36 -51.93 -0.38 0.61 16 44 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 45 H 0.05 0.54 7.91 -51.93 -0.41 0.12 16 46 H 0.36 5.42 7.18 -39.29 -0.28 5.14 16 47 H 0.05 0.65 8.13 -51.93 -0.42 0.22 16 48 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 49 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 50 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 51 H 0.07 0.92 7.57 -51.93 -0.39 0.53 16 52 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 403.40 15.07 6.08 6.08 Total: -1.00 -34.34 403.40 -6.63 -40.96 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -8.59 Total: 11.38 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 1.11 Total: 8.98 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.36 Total: -55.18 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.15 Total: -26.82 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.34 -6.63 -40.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724936499.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.524 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds