Wall clock time and date at job start Wed Apr 1 2020 01:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00031 * 2 1 4 4 C 1.52997 * 109.46885 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47016 * 60.00208 * 4 3 2 6 6 C 1.53001 * 109.47313 * 300.00015 * 4 3 2 7 7 C 1.50696 * 109.47017 * 180.02562 * 4 3 2 8 8 O 1.21285 * 120.00286 * 350.52579 * 7 4 3 9 9 N 1.34780 * 120.00043 * 170.80775 * 7 4 3 10 10 C 1.47420 * 125.64902 * 3.91237 * 9 7 4 11 11 C 1.55122 * 104.72544 * 155.82128 * 10 9 7 12 12 H 1.08998 * 110.94346 * 155.29216 * 11 10 9 13 13 C 1.53001 * 111.19135 * 279.19493 * 11 10 9 14 14 C 1.55163 * 101.48601 * 37.29343 * 11 10 9 15 15 H 1.08999 * 110.86931 * 82.76887 * 14 11 10 16 16 N 1.46899 * 110.72050 * 205.97198 * 14 11 10 17 17 C 1.46901 * 110.99715 * 199.97919 * 16 14 11 18 18 C 1.50705 * 109.46798 * 180.02562 * 17 16 14 19 19 O 1.21286 * 120.00232 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99730 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00013 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99798 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99826 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99738 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00258 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47465 * 89.99585 * 25 23 21 27 27 H 1.48506 * 109.47092 * 209.99447 * 25 23 21 28 28 H 1.48504 * 109.47298 * 329.99624 * 25 23 21 29 29 C 1.47024 * 125.64597 * 184.22533 * 9 7 4 30 30 H 1.09010 * 109.46841 * 300.00106 * 1 2 3 31 31 H 1.09003 * 109.47003 * 59.99325 * 1 2 3 32 32 H 1.08989 * 109.47403 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47064 * 60.00508 * 3 2 1 34 34 H 1.08993 * 109.46972 * 300.00304 * 3 2 1 35 35 H 1.08997 * 109.46844 * 187.60638 * 5 4 3 36 36 H 1.08994 * 109.46988 * 307.60322 * 5 4 3 37 37 H 1.08997 * 109.47488 * 67.60782 * 5 4 3 38 38 H 1.09000 * 109.47519 * 299.99958 * 6 4 3 39 39 H 1.09002 * 109.47032 * 60.00131 * 6 4 3 40 40 H 1.08996 * 109.47203 * 179.97438 * 6 4 3 41 41 H 1.09005 * 110.36540 * 274.74879 * 10 9 7 42 42 H 1.09005 * 110.36582 * 37.06985 * 10 9 7 43 43 H 1.09007 * 109.47420 * 172.18644 * 13 11 10 44 44 H 1.09007 * 109.46680 * 292.18258 * 13 11 10 45 45 H 1.09000 * 109.47405 * 52.18207 * 13 11 10 46 46 H 1.00897 * 111.00249 * 76.02622 * 16 14 11 47 47 H 1.09001 * 109.47121 * 299.99383 * 17 16 14 48 48 H 1.08990 * 109.47320 * 59.99841 * 17 16 14 49 49 H 0.97000 * 120.00214 * 359.97438 * 20 18 17 50 50 H 0.96995 * 119.99914 * 180.02562 * 24 23 21 51 51 H 1.08998 * 109.88493 * 300.43483 * 29 9 7 52 52 H 1.08998 * 109.88556 * 61.44750 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4251 -1.2483 6 6 3.9864 0.4255 1.2502 7 6 4.1484 2.5613 0.0013 8 8 3.4488 3.5368 -0.1717 9 7 5.4751 2.7082 0.1884 10 6 6.4506 1.6110 0.3222 11 6 7.8054 2.2336 -0.1058 12 1 8.6405 1.6960 0.3433 13 6 7.9389 2.2738 -1.6295 14 6 7.6862 3.6655 0.4799 15 1 7.9588 3.6773 1.5351 16 7 8.5170 4.6088 -0.2803 17 6 8.7938 5.8184 0.5061 18 6 9.6459 6.7605 -0.3048 19 8 9.9893 6.4543 -1.4270 20 7 10.0264 7.9435 0.2172 21 6 10.8021 8.8004 -0.5202 22 1 11.1085 8.5273 -1.5191 23 6 11.1939 10.0201 0.0177 24 7 11.9378 10.8412 -0.6889 25 14 10.6644 10.4921 1.7457 26 1 11.6788 10.0180 2.7212 27 1 10.5401 11.9690 1.8394 28 1 9.3534 9.8646 2.0506 29 6 6.1881 3.9892 0.2993 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0275 -0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 5.0560 0.2208 -1.1824 36 1 3.4413 -0.5155 -1.3190 37 1 3.7869 1.0290 -2.1333 38 1 3.6645 0.9666 2.1400 39 1 3.5431 -0.5702 1.2502 40 1 5.0729 0.3390 1.2504 41 1 6.4974 1.2690 1.3561 42 1 6.1868 0.7860 -0.3396 43 1 8.8310 2.8380 -1.9014 44 1 8.0208 1.2571 -2.0139 45 1 7.0599 2.7549 -2.0587 46 1 8.0853 4.8417 -1.1620 47 1 7.8542 6.3081 0.7622 48 1 9.3218 5.5451 1.4195 49 1 9.7515 8.1886 1.1145 50 1 12.2116 11.6925 -0.3133 51 1 6.0421 4.5745 -0.6085 52 1 5.8200 4.5449 1.1617 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724936499.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:20 Heat of formation + Delta-G solvation = -127.625510 kcal Electronic energy + Delta-G solvation = -30824.744832 eV Core-core repulsion = 26630.822405 eV Total energy + Delta-G solvation = -4193.922427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.86882 -40.39387 -39.57225 -38.65798 -36.43908 -36.00635 -35.29795 -33.75524 -33.06534 -30.20618 -28.46866 -28.36430 -27.99341 -27.52410 -26.54657 -25.71307 -24.32114 -22.20635 -21.32693 -20.81165 -20.35552 -20.06020 -18.08256 -17.65641 -17.54266 -17.27310 -16.95868 -16.86704 -16.48964 -16.30435 -15.93292 -15.68176 -15.44846 -15.26589 -15.07901 -14.57925 -14.51102 -14.41609 -14.14344 -14.10161 -13.85742 -13.74811 -13.35453 -13.29882 -13.19759 -13.09247 -12.90817 -12.85497 -12.66120 -12.41964 -12.36797 -12.09375 -12.07585 -11.99752 -11.85460 -11.65979 -11.51502 -11.36040 -10.81616 -10.69073 -10.43412 -10.25103 -9.74919 -9.36842 -8.41773 -6.02634 1.29791 1.35124 1.43866 1.47324 1.74812 1.95641 2.22459 2.67677 2.83182 3.14547 3.25999 3.39669 3.52909 3.62560 3.74756 3.85579 4.03525 4.10356 4.15170 4.18549 4.21421 4.36024 4.42714 4.44211 4.48889 4.54337 4.57190 4.58068 4.61771 4.70284 4.75060 4.77530 4.82831 4.84799 4.89677 4.96632 5.01975 5.08240 5.21753 5.30443 5.31871 5.37999 5.52028 5.55222 5.89534 6.02430 6.09534 6.25701 6.41736 6.58957 6.87710 7.00026 7.39359 7.95931 8.75860 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021978 B = 0.002058 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.699872 B =13602.786680 C =14196.824190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.089 3.911 4 C -0.071 4.071 5 C -0.138 4.138 6 C -0.145 4.145 7 C 0.533 3.467 8 O -0.591 6.591 9 N -0.603 5.603 10 C 0.089 3.911 11 C -0.086 4.086 12 H 0.119 0.881 13 C -0.139 4.139 14 C 0.086 3.914 15 H 0.121 0.879 16 N -0.661 5.661 17 C 0.058 3.942 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.255 1.255 27 H -0.277 1.277 28 H -0.233 1.233 29 C 0.078 3.922 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.106 0.894 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.032 0.968 46 H 0.343 0.657 47 H 0.071 0.929 48 H 0.124 0.876 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.043 0.957 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.619 -27.209 10.436 35.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.012 3.988 4 C -0.074 4.074 5 C -0.195 4.195 6 C -0.202 4.202 7 C 0.323 3.677 8 O -0.472 6.472 9 N -0.335 5.335 10 C -0.032 4.032 11 C -0.105 4.105 12 H 0.137 0.863 13 C -0.197 4.197 14 C -0.025 4.025 15 H 0.139 0.861 16 N -0.292 5.292 17 C -0.074 4.074 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.179 1.179 27 H -0.202 1.202 28 H -0.156 1.156 29 C -0.047 4.047 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.125 0.875 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.163 0.837 47 H 0.089 0.911 48 H 0.142 0.858 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.061 0.939 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.998 -27.179 9.718 34.555 hybrid contribution -1.148 2.191 0.120 2.476 sum -20.145 -24.988 9.839 33.572 Atomic orbital electron populations 1.22935 0.79510 1.04111 1.00501 1.87764 1.21149 1.26892 1.95506 1.22075 0.91875 0.84527 1.00330 1.20622 0.94248 0.91560 1.00948 1.21924 1.03070 1.00664 0.93838 1.22087 1.03676 1.00799 0.93623 1.20640 0.80815 0.91218 0.75025 1.90697 1.61743 1.43014 1.51759 1.48303 1.05902 1.08720 1.70610 1.23250 0.86426 0.89917 1.03615 1.22456 0.97502 0.94013 0.96564 0.86335 1.21614 1.01105 1.02186 0.94791 1.22854 0.86725 0.93291 0.99650 0.86091 1.60272 1.49450 1.13343 1.06153 1.21739 0.98603 0.90127 0.96951 1.20998 0.84433 0.82886 0.88098 1.90548 1.60318 1.76464 1.22484 1.42035 1.47956 1.16786 1.16509 1.19005 1.28208 0.98722 0.99859 0.92686 1.26123 0.96235 0.94926 1.04154 1.69807 1.36818 1.10784 1.40084 0.85362 0.80448 0.78743 0.76941 1.17883 1.20195 1.15605 1.22820 0.94378 0.86684 1.00806 0.93592 0.93887 0.87544 0.93610 0.93968 0.89581 0.89460 0.93734 0.92902 0.89778 0.89004 0.87652 0.87697 0.92723 0.90866 0.94862 0.83666 0.91111 0.85793 0.77477 0.91171 0.93865 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.39 -6.30 9.23 -148.98 -1.37 -7.68 16 3 C 0.09 1.66 4.15 71.98 0.30 1.96 16 4 C -0.07 -1.15 0.58 -52.93 -0.03 -1.18 16 5 C -0.14 -1.84 8.25 71.98 0.59 -1.25 16 6 C -0.15 -1.59 8.02 71.98 0.58 -1.02 16 7 C 0.53 12.14 6.57 87.66 0.58 12.72 16 8 O -0.59 -19.04 16.31 -3.04 -0.05 -19.09 16 9 N -0.60 -11.09 3.28 -811.36 -2.66 -13.75 16 10 C 0.09 0.94 4.38 86.93 0.38 1.32 16 11 C -0.09 -1.18 3.63 -9.32 -0.03 -1.21 16 12 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 13 C -0.14 -2.53 8.43 71.98 0.61 -1.92 16 14 C 0.09 1.52 3.03 46.11 0.14 1.66 16 15 H 0.12 1.63 7.89 -2.39 -0.02 1.61 16 16 N -0.66 -17.64 4.94 -489.43 -2.42 -20.06 16 17 C 0.06 1.66 6.02 85.56 0.52 2.17 16 18 C 0.45 19.86 7.82 87.66 0.69 20.54 16 19 O -0.61 -33.66 15.78 -3.05 -0.05 -33.71 16 20 N -0.59 -27.68 5.09 -306.99 -1.56 -29.24 16 21 C -0.33 -19.30 10.16 84.04 0.85 -18.44 16 22 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 24 N -0.93 -56.58 13.96 21.66 0.30 -56.28 16 25 Si 0.97 38.84 27.74 68.60 1.90 40.74 16 26 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 27 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16 28 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 29 C 0.08 1.65 6.20 86.73 0.54 2.19 16 30 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.04 0.91 8.00 -2.39 -0.02 0.89 16 35 H 0.09 0.81 5.10 -2.39 -0.01 0.80 16 36 H 0.09 1.05 7.46 -2.39 -0.02 1.04 16 37 H 0.04 0.73 8.13 -2.39 -0.02 0.71 16 38 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.85 7.68 -2.39 -0.02 0.83 16 40 H 0.09 0.63 4.19 -2.39 -0.01 0.62 16 41 H 0.11 0.61 6.90 -2.38 -0.02 0.59 16 42 H 0.11 0.82 4.41 -2.38 -0.01 0.81 16 43 H 0.05 1.31 7.36 -2.38 -0.02 1.29 16 44 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.03 0.70 7.91 -2.39 -0.02 0.68 16 46 H 0.34 10.65 7.18 -89.70 -0.64 10.00 16 47 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 48 H 0.12 2.79 8.08 -2.39 -0.02 2.77 16 49 H 0.39 15.04 5.76 -92.71 -0.53 14.51 16 50 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 51 H 0.04 1.15 7.57 -2.39 -0.02 1.13 16 52 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -82.98 403.40 1.21 -81.78 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: -0.30 Total: 38.62 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 7.42 Total: 18.66 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -6.34 Total: -119.32 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -1.47 Total: -60.47 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.90 Total: 40.74 kcal Total: -82.98 1.21 -81.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724936499.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.847 kcal (2) G-P(sol) polarization free energy of solvation -82.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds