Wall clock time and date at job start Wed Apr 1 2020 01:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00159 * 2 1 4 4 C 1.53004 * 109.47348 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47103 * 59.99501 * 4 3 2 6 6 C 1.52999 * 109.46617 * 299.99919 * 4 3 2 7 7 C 1.50694 * 109.46953 * 179.97438 * 4 3 2 8 8 O 1.21276 * 120.00479 * 351.86749 * 7 4 3 9 9 N 1.34780 * 120.00018 * 171.86396 * 7 4 3 10 10 C 1.48155 * 127.83231 * 4.08491 * 9 7 4 11 11 C 1.54390 * 104.61378 * 140.41496 * 10 9 7 12 12 H 1.09004 * 110.33788 * 264.99294 * 11 10 9 13 13 C 1.52999 * 110.43245 * 142.78298 * 11 10 9 14 14 C 1.54281 * 104.96419 * 23.86187 * 11 10 9 15 15 H 1.09000 * 110.34562 * 241.03088 * 14 11 10 16 16 N 1.46895 * 110.34384 * 118.87184 * 14 11 10 17 17 C 1.46897 * 111.00193 * 163.55072 * 16 14 11 18 18 C 1.50699 * 109.47521 * 179.97438 * 17 16 14 19 19 O 1.21302 * 119.99806 * 359.73042 * 18 17 16 20 20 N 1.34774 * 120.00368 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00002 * 179.73014 * 20 18 17 22 22 H 1.08005 * 120.00113 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99865 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99835 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99854 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47341 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47048 * 119.99458 * 25 23 21 28 28 H 1.48495 * 109.46822 * 239.99738 * 25 23 21 29 29 C 1.48139 * 127.84220 * 184.08058 * 9 7 4 30 30 H 1.09003 * 109.46937 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47212 * 299.99958 * 1 2 3 32 32 H 1.08998 * 109.47298 * 60.00426 * 1 2 3 33 33 H 1.08996 * 109.47170 * 59.99601 * 3 2 1 34 34 H 1.09006 * 109.46565 * 299.99774 * 3 2 1 35 35 H 1.08998 * 109.47176 * 185.98453 * 5 4 3 36 36 H 1.09001 * 109.47485 * 305.98831 * 5 4 3 37 37 H 1.09004 * 109.47106 * 65.99035 * 5 4 3 38 38 H 1.08998 * 109.47310 * 299.99583 * 6 4 3 39 39 H 1.08997 * 109.47163 * 60.00355 * 6 4 3 40 40 H 1.09007 * 109.46658 * 179.97438 * 6 4 3 41 41 H 1.08996 * 110.41030 * 21.62524 * 10 9 7 42 42 H 1.09001 * 110.50090 * 259.24256 * 10 9 7 43 43 H 1.09007 * 109.46826 * 298.88477 * 13 11 10 44 44 H 1.08992 * 109.47012 * 58.88368 * 13 11 10 45 45 H 1.08999 * 109.46977 * 178.88829 * 13 11 10 46 46 H 1.00899 * 111.00097 * 39.59984 * 16 14 11 47 47 H 1.08999 * 109.47239 * 60.00139 * 17 16 14 48 48 H 1.09005 * 109.47413 * 300.00115 * 17 16 14 49 49 H 0.96993 * 119.99949 * 359.73024 * 20 18 17 50 50 H 0.97006 * 119.99843 * 180.02562 * 24 23 21 51 51 H 1.09001 * 110.40636 * 100.80380 * 29 9 7 52 52 H 1.09000 * 110.40451 * 338.37315 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9864 0.4255 -1.2501 6 6 3.9873 0.4252 1.2483 7 6 4.1484 2.5613 -0.0013 8 8 3.4451 3.5382 -0.1498 9 7 5.4781 2.7071 0.1633 10 6 6.5021 1.6422 0.2746 11 6 7.7072 2.1749 -0.5302 12 1 7.6815 1.7906 -1.5499 13 6 9.0198 1.7838 0.1517 14 6 7.5392 3.7086 -0.5307 15 1 7.4328 4.0778 -1.5508 16 7 8.6870 4.3483 0.1259 17 6 8.7487 5.7796 -0.1986 18 6 9.9357 6.4006 0.4917 19 8 10.6564 5.7188 1.1897 20 7 10.1937 7.7144 0.3375 21 6 11.2704 8.2803 0.9700 22 1 11.9116 7.6735 1.5921 23 6 11.5361 9.6350 0.8114 24 7 10.7557 10.3734 0.0548 25 14 13.0027 10.4063 1.6737 26 1 13.7165 9.3686 2.4604 27 1 13.9247 10.9827 0.6623 28 1 12.5325 11.4809 2.5844 29 6 6.2473 3.9683 0.2738 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 5.0604 0.2464 -1.1986 36 1 3.4613 -0.5280 -1.3053 37 1 3.7589 1.0174 -2.1367 38 1 3.6661 0.9660 2.1385 39 1 3.5440 -0.5706 1.2483 40 1 5.0740 0.3387 1.2476 41 1 6.1340 0.7138 -0.1620 42 1 6.7800 1.4872 1.3171 43 1 9.0569 2.2244 1.1481 44 1 9.0781 0.6984 0.2319 45 1 9.8593 2.1502 -0.4391 46 1 9.5487 3.8844 -0.1197 47 1 7.8353 6.2686 0.1400 48 1 8.8491 5.9038 -1.2769 49 1 9.6177 8.2594 -0.2209 50 1 10.9414 11.3190 -0.0562 51 1 6.4848 4.1784 1.3167 52 1 5.6870 4.7947 -0.1633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724936504.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:24 Heat of formation + Delta-G solvation = -102.904523 kcal Electronic energy + Delta-G solvation = -30691.394389 eV Core-core repulsion = 26498.543945 eV Total energy + Delta-G solvation = -4192.850445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86098 -39.03608 -38.16051 -37.70589 -35.40318 -34.53274 -33.78378 -32.31327 -31.20276 -29.07901 -27.73851 -27.62996 -26.98599 -26.10616 -25.79554 -24.33491 -23.35771 -21.59226 -19.58620 -19.39209 -19.05202 -17.90312 -17.21327 -16.63854 -16.30815 -16.16818 -15.99681 -15.67093 -15.48706 -15.17194 -14.88035 -14.48950 -14.31051 -14.13630 -13.81219 -13.75616 -13.60495 -13.29680 -12.88054 -12.72322 -12.55113 -12.41213 -12.33447 -12.17915 -12.05851 -11.96178 -11.77295 -11.60611 -11.53688 -11.41242 -11.26052 -11.09832 -10.88006 -10.85509 -10.64325 -10.34802 -10.22896 -10.01326 -9.84503 -9.52557 -8.91241 -8.47543 -8.12676 -7.96850 -6.42191 -3.83138 2.41750 2.59148 3.16029 3.26706 3.33735 3.48132 3.89701 4.06018 4.11988 4.30038 4.31923 4.39476 4.47355 4.59265 4.69927 4.83965 4.97544 4.98781 5.08246 5.10471 5.19356 5.23306 5.25739 5.27003 5.29650 5.32935 5.36165 5.41178 5.44483 5.51052 5.59711 5.62344 5.68717 5.72459 5.81056 5.84326 5.89975 5.94927 5.96331 6.00827 6.10834 6.26176 6.34154 6.76107 7.16697 7.36336 7.54885 7.60662 7.94079 8.05760 8.60285 9.17232 9.53750 10.04669 10.75528 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.001949 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.349306 B =14363.035965 C =15063.813334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.086 3.914 4 C -0.075 4.075 5 C -0.142 4.142 6 C -0.148 4.148 7 C 0.547 3.453 8 O -0.543 6.543 9 N -0.616 5.616 10 C 0.098 3.902 11 C -0.105 4.105 12 H 0.079 0.921 13 C -0.145 4.145 14 C 0.075 3.925 15 H 0.052 0.948 16 N -0.658 5.658 17 C 0.046 3.954 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.113 3.887 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.357 0.643 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.088 0.912 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.175 -22.095 -3.561 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.009 3.991 4 C -0.078 4.078 5 C -0.199 4.199 6 C -0.205 4.205 7 C 0.335 3.665 8 O -0.420 6.420 9 N -0.350 5.350 10 C -0.024 4.024 11 C -0.125 4.125 12 H 0.098 0.902 13 C -0.203 4.203 14 C -0.037 4.037 15 H 0.070 0.930 16 N -0.295 5.295 17 C -0.086 4.086 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.010 4.010 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.180 0.820 47 H 0.104 0.896 48 H 0.062 0.938 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.106 0.894 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.371 -21.892 -2.632 27.463 hybrid contribution 0.415 1.228 -0.928 1.594 sum -15.956 -20.664 -3.560 26.349 Atomic orbital electron populations 1.22729 0.80757 1.02668 1.00198 1.87783 1.19763 1.27715 1.95520 1.22206 0.91081 0.84211 1.01635 1.20626 0.94921 0.93069 0.99182 1.21927 1.01741 1.00969 0.95236 1.22031 1.02204 1.00977 0.95263 1.19944 0.80278 0.90583 0.75668 1.90717 1.60122 1.41149 1.49996 1.48790 1.05281 1.09268 1.71643 1.22851 0.87255 0.91302 1.01034 1.22220 0.95665 0.94712 0.99859 0.90231 1.21746 0.95220 1.00767 1.02572 1.22384 0.91816 0.93631 0.95832 0.92969 1.60307 1.06095 1.01841 1.61214 1.21756 0.99403 0.89551 0.97912 1.19772 0.87760 0.83267 0.86533 1.90520 1.51482 1.61808 1.42994 1.41873 1.26992 1.07123 1.43994 1.19756 1.04690 0.92500 1.25930 0.87832 1.25273 0.99034 0.96284 0.97392 1.69624 1.38435 1.07552 1.38609 0.85799 0.80639 0.78996 0.78902 1.19212 1.20783 1.20750 1.22456 0.90273 0.86511 1.01773 0.89554 0.94005 0.94012 0.92568 0.92249 0.91503 0.90301 0.92224 0.92245 0.90537 0.91168 0.89369 0.90156 0.90066 0.92590 0.92071 0.81976 0.89605 0.93773 0.77452 0.91911 0.89390 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.47 9.25 -35.23 -0.33 -3.80 16 3 C 0.09 0.84 4.14 37.16 0.15 0.99 16 4 C -0.07 -0.70 0.58 -155.66 -0.09 -0.79 16 5 C -0.14 -1.10 8.23 37.16 0.31 -0.79 16 6 C -0.15 -1.17 8.04 37.16 0.30 -0.87 16 7 C 0.55 6.76 6.62 -10.99 -0.07 6.69 16 8 O -0.54 -8.72 16.23 5.56 0.09 -8.63 16 9 N -0.62 -6.92 3.28 -169.31 -0.55 -7.47 16 10 C 0.10 0.83 4.50 -2.40 -0.01 0.82 16 11 C -0.10 -0.96 3.65 -89.22 -0.33 -1.29 16 12 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 13 C -0.15 -1.35 7.82 37.16 0.29 -1.06 16 14 C 0.07 0.89 3.35 -66.32 -0.22 0.67 16 15 H 0.05 0.63 7.95 -51.93 -0.41 0.21 16 16 N -0.66 -9.81 4.98 -106.52 -0.53 -10.35 16 17 C 0.05 0.80 6.00 -4.98 -0.03 0.77 16 18 C 0.44 10.22 7.82 -10.99 -0.09 10.13 16 19 O -0.58 -15.42 15.78 5.54 0.09 -15.33 16 20 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 21 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 25 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 C 0.11 1.43 6.41 -2.41 -0.02 1.42 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.62 8.01 -51.93 -0.42 0.20 16 35 H 0.07 0.44 5.27 -51.93 -0.27 0.16 16 36 H 0.08 0.58 7.51 -51.93 -0.39 0.19 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.56 7.68 -51.93 -0.40 0.17 16 40 H 0.07 0.48 4.64 -51.92 -0.24 0.24 16 41 H 0.09 0.58 3.91 -51.93 -0.20 0.38 16 42 H 0.08 0.66 7.60 -51.93 -0.39 0.27 16 43 H 0.08 0.92 7.57 -51.92 -0.39 0.52 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.60 7.02 -51.93 -0.36 0.24 16 46 H 0.36 5.40 5.82 -39.29 -0.23 5.17 16 47 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 48 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.09 1.21 8.06 -51.93 -0.42 0.80 16 52 H 0.08 1.11 7.85 -51.93 -0.41 0.70 16 LS Contribution 405.48 15.07 6.11 6.11 Total: -1.00 -32.80 405.48 -7.00 -39.80 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.59 Total: 11.73 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 1.07 Total: 10.04 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.42 Total: -55.92 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.15 Total: -27.76 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.80 -7.00 -39.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724936504.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.105 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds