Wall clock time and date at job start Wed Apr 1 2020 01:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00159 * 2 1 4 4 C 1.53004 * 109.47348 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47103 * 59.99501 * 4 3 2 6 6 C 1.52999 * 109.46617 * 299.99919 * 4 3 2 7 7 C 1.50694 * 109.46953 * 179.97438 * 4 3 2 8 8 O 1.21276 * 120.00479 * 351.86749 * 7 4 3 9 9 N 1.34780 * 120.00018 * 171.86396 * 7 4 3 10 10 C 1.48155 * 127.83231 * 4.08491 * 9 7 4 11 11 C 1.54390 * 104.61378 * 140.41496 * 10 9 7 12 12 H 1.09004 * 110.33788 * 264.99294 * 11 10 9 13 13 C 1.52999 * 110.43245 * 142.78298 * 11 10 9 14 14 C 1.54281 * 104.96419 * 23.86187 * 11 10 9 15 15 H 1.09000 * 110.34562 * 241.03088 * 14 11 10 16 16 N 1.46895 * 110.34384 * 118.87184 * 14 11 10 17 17 C 1.46897 * 111.00193 * 163.55072 * 16 14 11 18 18 C 1.50699 * 109.47521 * 179.97438 * 17 16 14 19 19 O 1.21302 * 119.99806 * 359.73042 * 18 17 16 20 20 N 1.34774 * 120.00368 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00002 * 179.73014 * 20 18 17 22 22 H 1.08005 * 120.00113 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99865 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99835 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99854 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47341 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47048 * 119.99458 * 25 23 21 28 28 H 1.48495 * 109.46822 * 239.99738 * 25 23 21 29 29 C 1.48139 * 127.84220 * 184.08058 * 9 7 4 30 30 H 1.09003 * 109.46937 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47212 * 299.99958 * 1 2 3 32 32 H 1.08998 * 109.47298 * 60.00426 * 1 2 3 33 33 H 1.08996 * 109.47170 * 59.99601 * 3 2 1 34 34 H 1.09006 * 109.46565 * 299.99774 * 3 2 1 35 35 H 1.08998 * 109.47176 * 185.98453 * 5 4 3 36 36 H 1.09001 * 109.47485 * 305.98831 * 5 4 3 37 37 H 1.09004 * 109.47106 * 65.99035 * 5 4 3 38 38 H 1.08998 * 109.47310 * 299.99583 * 6 4 3 39 39 H 1.08997 * 109.47163 * 60.00355 * 6 4 3 40 40 H 1.09007 * 109.46658 * 179.97438 * 6 4 3 41 41 H 1.08996 * 110.41030 * 21.62524 * 10 9 7 42 42 H 1.09001 * 110.50090 * 259.24256 * 10 9 7 43 43 H 1.09007 * 109.46826 * 298.88477 * 13 11 10 44 44 H 1.08992 * 109.47012 * 58.88368 * 13 11 10 45 45 H 1.08999 * 109.46977 * 178.88829 * 13 11 10 46 46 H 1.00899 * 111.00097 * 39.59984 * 16 14 11 47 47 H 1.08999 * 109.47239 * 60.00139 * 17 16 14 48 48 H 1.09005 * 109.47413 * 300.00115 * 17 16 14 49 49 H 0.96993 * 119.99949 * 359.73024 * 20 18 17 50 50 H 0.97006 * 119.99843 * 180.02562 * 24 23 21 51 51 H 1.09001 * 110.40636 * 100.80380 * 29 9 7 52 52 H 1.09000 * 110.40451 * 338.37315 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9864 0.4255 -1.2501 6 6 3.9873 0.4252 1.2483 7 6 4.1484 2.5613 -0.0013 8 8 3.4451 3.5382 -0.1498 9 7 5.4781 2.7071 0.1633 10 6 6.5021 1.6422 0.2746 11 6 7.7072 2.1749 -0.5302 12 1 7.6815 1.7906 -1.5499 13 6 9.0198 1.7838 0.1517 14 6 7.5392 3.7086 -0.5307 15 1 7.4328 4.0778 -1.5508 16 7 8.6870 4.3483 0.1259 17 6 8.7487 5.7796 -0.1986 18 6 9.9357 6.4006 0.4917 19 8 10.6564 5.7188 1.1897 20 7 10.1937 7.7144 0.3375 21 6 11.2704 8.2803 0.9700 22 1 11.9116 7.6735 1.5921 23 6 11.5361 9.6350 0.8114 24 7 10.7557 10.3734 0.0548 25 14 13.0027 10.4063 1.6737 26 1 13.7165 9.3686 2.4604 27 1 13.9247 10.9827 0.6623 28 1 12.5325 11.4809 2.5844 29 6 6.2473 3.9683 0.2738 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 5.0604 0.2464 -1.1986 36 1 3.4613 -0.5280 -1.3053 37 1 3.7589 1.0174 -2.1367 38 1 3.6661 0.9660 2.1385 39 1 3.5440 -0.5706 1.2483 40 1 5.0740 0.3387 1.2476 41 1 6.1340 0.7138 -0.1620 42 1 6.7800 1.4872 1.3171 43 1 9.0569 2.2244 1.1481 44 1 9.0781 0.6984 0.2319 45 1 9.8593 2.1502 -0.4391 46 1 9.5487 3.8844 -0.1197 47 1 7.8353 6.2686 0.1400 48 1 8.8491 5.9038 -1.2769 49 1 9.6177 8.2594 -0.2209 50 1 10.9414 11.3190 -0.0562 51 1 6.4848 4.1784 1.3167 52 1 5.6870 4.7947 -0.1633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724936504.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:24 Heat of formation + Delta-G solvation = -126.951777 kcal Electronic energy + Delta-G solvation = -30692.437156 eV Core-core repulsion = 26498.543945 eV Total energy + Delta-G solvation = -4193.893212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76187 -40.29940 -39.51596 -38.65904 -36.39964 -35.96496 -35.30601 -33.39720 -33.10202 -30.14651 -28.42147 -28.31025 -28.07263 -27.28774 -26.47872 -25.89660 -24.45027 -22.42316 -21.13834 -20.44694 -20.10688 -19.85696 -18.08614 -17.70094 -17.45593 -17.11651 -16.91879 -16.86016 -16.56575 -16.37268 -16.04560 -15.79404 -15.58247 -15.37153 -15.05559 -14.90256 -14.39478 -14.27262 -13.98890 -13.74920 -13.65394 -13.51008 -13.44940 -13.14935 -13.01787 -12.93292 -12.91215 -12.81675 -12.65283 -12.40425 -12.34694 -12.12032 -12.10346 -12.08525 -11.77119 -11.68365 -11.51169 -11.39478 -10.80120 -10.67417 -10.33766 -10.01918 -9.86447 -9.37276 -8.47088 -5.95892 1.36483 1.41768 1.47259 1.56084 1.70801 2.04556 2.28710 2.77015 2.94468 3.20356 3.30971 3.46872 3.54218 3.62690 3.75566 3.87051 3.94591 4.12611 4.26968 4.28231 4.33129 4.38127 4.44700 4.45884 4.50071 4.55694 4.58876 4.59660 4.60595 4.72162 4.73412 4.81366 4.84236 4.86530 4.88786 4.90780 4.98354 5.04926 5.17595 5.23462 5.29339 5.35584 5.41006 5.56884 5.87604 6.08139 6.11188 6.38513 6.49638 6.59075 6.98926 7.12069 7.55795 8.10261 8.70573 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.001949 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.349306 B =14363.035965 C =15063.813334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.090 3.910 4 C -0.071 4.071 5 C -0.136 4.136 6 C -0.143 4.143 7 C 0.542 3.458 8 O -0.589 6.589 9 N -0.613 5.613 10 C 0.098 3.902 11 C -0.097 4.097 12 H 0.102 0.898 13 C -0.141 4.141 14 C 0.077 3.923 15 H 0.058 0.942 16 N -0.665 5.665 17 C 0.061 3.939 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.273 1.273 29 C 0.113 3.887 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.356 0.644 47 H 0.095 0.905 48 H 0.066 0.934 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.073 0.927 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.143 -24.126 -4.164 29.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.012 3.988 4 C -0.074 4.074 5 C -0.193 4.193 6 C -0.200 4.200 7 C 0.332 3.668 8 O -0.469 6.469 9 N -0.345 5.345 10 C -0.024 4.024 11 C -0.116 4.116 12 H 0.120 0.880 13 C -0.199 4.199 14 C -0.033 4.033 15 H 0.076 0.924 16 N -0.301 5.301 17 C -0.072 4.072 18 C 0.228 3.772 19 O -0.505 6.505 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.563 5.563 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.198 1.198 29 C -0.011 4.011 30 H 0.124 0.876 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.072 0.928 46 H 0.180 0.820 47 H 0.113 0.887 48 H 0.084 0.916 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.345 -23.951 -3.247 29.178 hybrid contribution 0.339 1.816 -0.726 1.985 sum -16.006 -22.136 -3.974 27.604 Atomic orbital electron populations 1.22935 0.79483 1.04104 1.00534 1.87760 1.21173 1.26876 1.95517 1.22079 0.91658 0.84560 1.00485 1.20637 0.94407 0.91426 1.00934 1.21919 1.02894 1.00779 0.93749 1.22025 1.03128 1.00951 0.93877 1.20562 0.80272 0.91318 0.74679 1.90691 1.61229 1.42862 1.52139 1.48836 1.05426 1.09467 1.70813 1.23062 0.86170 0.91402 1.01725 1.22238 0.95828 0.92267 1.01264 0.87992 1.21687 0.94904 1.02316 1.00976 1.22401 0.89940 0.95644 0.95355 0.92442 1.60268 1.07088 1.00611 1.62182 1.21589 0.96575 0.90748 0.98275 1.20777 0.88493 0.82461 0.85482 1.90489 1.53123 1.62457 1.44403 1.41956 1.26825 1.08020 1.44382 1.19728 1.05960 0.93228 1.27255 0.90079 1.26068 1.01492 0.96174 0.97717 1.69688 1.39542 1.07998 1.39061 0.84852 0.77431 0.77919 0.78022 1.19598 1.19585 1.19815 1.22316 0.90816 0.87065 1.00906 0.87563 0.93747 0.93667 0.93817 0.93464 0.89765 0.89378 0.93063 0.93290 0.89477 0.89740 0.86608 0.89530 0.92403 0.89934 0.92754 0.82003 0.88666 0.91641 0.77119 0.91359 0.90832 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.39 -6.49 9.25 -148.98 -1.38 -7.87 16 3 C 0.09 1.72 4.14 71.98 0.30 2.02 16 4 C -0.07 -1.23 0.58 -52.93 -0.03 -1.26 16 5 C -0.14 -1.77 8.23 71.98 0.59 -1.17 16 6 C -0.14 -1.95 8.04 71.98 0.58 -1.37 16 7 C 0.54 13.16 6.62 87.65 0.58 13.74 16 8 O -0.59 -19.47 16.23 -3.02 -0.05 -19.52 16 9 N -0.61 -13.07 3.28 -807.95 -2.65 -15.72 16 10 C 0.10 1.39 4.50 86.53 0.39 1.78 16 11 C -0.10 -1.50 3.65 -9.89 -0.04 -1.54 16 12 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 13 C -0.14 -2.29 7.82 71.98 0.56 -1.73 16 14 C 0.08 1.74 3.35 45.82 0.15 1.89 16 15 H 0.06 1.27 7.95 -2.39 -0.02 1.25 16 16 N -0.66 -19.43 4.98 -490.91 -2.45 -21.88 16 17 C 0.06 2.06 6.00 85.56 0.51 2.57 16 18 C 0.44 20.72 7.82 87.66 0.69 21.41 16 19 O -0.62 -33.42 15.78 -3.10 -0.05 -33.47 16 20 N -0.57 -29.59 5.29 -306.97 -1.62 -31.21 16 21 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 22 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 23 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 24 N -0.92 -50.26 13.05 21.66 0.28 -49.97 16 25 Si 0.99 43.10 29.55 68.60 2.03 45.12 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 29 C 0.11 2.84 6.41 86.54 0.56 3.40 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 34 H 0.05 1.00 8.01 -2.38 -0.02 0.98 16 35 H 0.08 0.77 5.27 -2.39 -0.01 0.75 16 36 H 0.09 1.02 7.51 -2.39 -0.02 1.00 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 1.04 7.68 -2.39 -0.02 1.02 16 40 H 0.08 0.89 4.64 -2.38 -0.01 0.87 16 41 H 0.12 1.03 3.91 -2.39 -0.01 1.02 16 42 H 0.09 1.19 7.60 -2.39 -0.02 1.17 16 43 H 0.06 1.24 7.57 -2.38 -0.02 1.22 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.05 0.97 7.02 -2.39 -0.02 0.95 16 46 H 0.36 10.56 5.82 -89.69 -0.52 10.04 16 47 H 0.10 3.09 7.90 -2.39 -0.02 3.07 16 48 H 0.07 1.97 8.09 -2.38 -0.02 1.95 16 49 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 50 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 51 H 0.07 2.07 8.06 -2.39 -0.02 2.05 16 52 H 0.06 1.80 7.85 -2.39 -0.02 1.78 16 Total: -1.00 -72.80 405.48 1.17 -71.63 By element: Atomic # 1 Polarization: 40.37 SS G_CDS: -0.32 Total: 40.05 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 7.37 Total: 22.84 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -6.44 Total: -118.78 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -1.48 Total: -60.86 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -72.80 1.17 -71.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724936504.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.323 kcal (2) G-P(sol) polarization free energy of solvation -72.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds