Wall clock time and date at job start Wed Apr 1 2020 00:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46067 * 2 1 4 4 C 1.53030 * 109.46812 * 240.03534 * 2 1 3 5 5 C 1.53117 * 109.28172 * 180.80173 * 4 2 1 6 6 H 1.08999 * 109.57630 * 177.58863 * 5 4 2 7 7 N 1.46495 * 109.52130 * 297.74478 * 5 4 2 8 8 C 1.34781 * 120.00000 * 204.67862 * 7 5 4 9 9 O 1.21277 * 119.99814 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99821 * 180.02562 * 8 7 5 11 11 C 1.52999 * 109.46719 * 184.66850 * 10 8 7 12 12 C 1.53002 * 109.46954 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47119 * 59.94868 * 11 10 8 14 14 O 1.42891 * 109.47629 * 299.94692 * 11 10 8 15 15 C 1.53116 * 109.15966 * 57.65375 * 5 4 2 16 16 C 1.53045 * 109.27888 * 302.34332 * 15 5 4 17 17 N 1.46847 * 109.46338 * 119.97309 * 2 1 3 18 18 C 1.46898 * 111.00468 * 305.86159 * 17 2 1 19 19 C 1.50692 * 109.47108 * 160.27520 * 18 17 2 20 20 O 1.21295 * 120.00459 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99977 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00068 * 180.02562 * 21 19 18 23 23 H 1.07989 * 120.00057 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99848 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00240 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 119.99875 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47190 * 90.00166 * 26 24 22 28 28 H 1.48508 * 109.47517 * 209.99830 * 26 24 22 29 29 H 1.48497 * 109.47391 * 330.00036 * 26 24 22 30 30 H 1.08993 * 109.47613 * 307.90458 * 1 2 3 31 31 H 1.09002 * 109.47352 * 67.90787 * 1 2 3 32 32 H 1.09006 * 109.46689 * 187.90017 * 1 2 3 33 33 H 1.09000 * 109.50357 * 60.85660 * 4 2 1 34 34 H 1.09008 * 109.50113 * 300.74236 * 4 2 1 35 35 H 0.97001 * 120.00393 * 24.68576 * 7 5 4 36 36 H 1.08999 * 109.46883 * 64.67063 * 10 8 7 37 37 H 1.08999 * 109.47169 * 304.67004 * 10 8 7 38 38 H 1.09003 * 109.47330 * 175.08427 * 12 11 10 39 39 H 1.08996 * 109.47289 * 295.08706 * 12 11 10 40 40 H 1.09001 * 109.47130 * 55.08794 * 12 11 10 41 41 H 1.08994 * 109.46775 * 299.99859 * 13 11 10 42 42 H 1.09004 * 109.47077 * 59.99667 * 13 11 10 43 43 H 1.08997 * 109.47308 * 179.97438 * 13 11 10 44 44 H 0.96696 * 114.00150 * 60.00037 * 14 11 10 45 45 H 1.08992 * 109.50819 * 62.28448 * 15 5 4 46 46 H 1.09002 * 109.50286 * 182.37123 * 15 5 4 47 47 H 1.08997 * 109.46417 * 179.19916 * 16 15 5 48 48 H 1.08998 * 109.46211 * 299.16687 * 16 15 5 49 49 H 1.09000 * 109.46672 * 280.27759 * 18 17 2 50 50 H 1.08998 * 109.46652 * 40.27783 * 18 17 2 51 51 H 0.97003 * 119.99752 * 0.02562 * 21 19 18 52 52 H 0.96996 * 120.00270 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7206 -1.2500 5 6 3.5710 -0.7357 -1.2356 6 1 3.9390 -1.2852 -2.1020 7 7 4.0745 0.6394 -1.2780 8 6 5.3065 0.8913 -1.7631 9 8 5.9980 -0.0204 -2.1649 10 6 5.8246 2.3058 -1.8062 11 6 7.1870 2.3288 -2.5022 12 6 7.7128 3.7649 -2.5465 13 6 7.0402 1.7946 -3.9284 14 8 8.1057 1.5080 -1.7783 15 6 4.0548 -1.4186 0.0466 16 6 3.4865 -0.6776 1.2591 17 7 2.0193 -0.6917 1.1994 18 6 1.4372 -0.1107 2.4166 19 6 1.5526 -1.0980 3.5492 20 8 2.0693 -2.1791 3.3612 21 7 1.0826 -0.7793 4.7715 22 6 1.1880 -1.6773 5.8021 23 1 1.6480 -2.6398 5.6346 24 6 0.7029 -1.3488 7.0621 25 7 0.1426 -0.1777 7.2658 26 14 0.8459 -2.5726 8.4661 27 1 2.1313 -2.3604 9.1787 28 1 -0.2824 -2.3756 9.4114 29 1 0.8024 -3.9546 7.9245 30 1 -0.3634 0.6313 0.8108 31 1 -0.3634 0.3865 -0.9522 32 1 -0.3633 -1.0180 0.1413 33 1 1.6895 -0.1979 -2.1399 34 1 1.6660 -1.7445 -1.2577 35 1 3.5213 1.3686 -0.9569 36 1 5.9294 2.6854 -0.7898 37 1 5.1241 2.9327 -2.3578 38 1 8.7201 3.7704 -2.9629 39 1 7.0580 4.3725 -3.1712 40 1 7.7349 4.1751 -1.5368 41 1 6.6658 0.7714 -3.8963 42 1 6.3394 2.4208 -4.4806 43 1 8.0106 1.8114 -4.4244 44 1 7.8360 0.5819 -1.7097 45 1 3.7126 -2.4533 0.0593 46 1 5.1440 -1.3949 0.0828 47 1 3.8175 -1.1698 2.1736 48 1 3.8403 0.3534 1.2533 49 1 1.9727 0.8029 2.6749 50 1 0.3865 0.1208 2.2420 51 1 0.6697 0.0855 4.9220 52 1 -0.1964 0.0514 8.1452 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724994304.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:02 Heat of formation + Delta-G solvation = -127.910965 kcal Electronic energy + Delta-G solvation = -31224.391679 eV Core-core repulsion = 27030.456874 eV Total energy + Delta-G solvation = -4193.934805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.82497 -39.49067 -37.99383 -37.24074 -34.98480 -33.86394 -33.02836 -32.31883 -31.81513 -31.15290 -28.71324 -27.58180 -27.37606 -26.79203 -24.56844 -22.99026 -21.94027 -21.26999 -20.44593 -19.25171 -19.03786 -17.84520 -17.52452 -16.94923 -16.21243 -16.05453 -15.64904 -15.53259 -15.25642 -14.96840 -14.73852 -14.47270 -14.25416 -13.99602 -13.72471 -13.52612 -13.30166 -12.94537 -12.81743 -12.59896 -12.46837 -12.45557 -12.26125 -12.10645 -11.99626 -11.90255 -11.75182 -11.68808 -11.49875 -11.24827 -11.21021 -11.02389 -10.99874 -10.61492 -10.38922 -10.23153 -10.18573 -10.14462 -9.91336 -9.47574 -9.23691 -8.46102 -7.95093 -7.85240 -6.40494 -3.80998 2.33065 2.91586 3.18369 3.26865 3.32787 3.87802 3.94207 4.04002 4.23309 4.28376 4.43523 4.59568 4.67271 4.70569 4.89056 4.91615 5.03284 5.06713 5.16013 5.21139 5.25472 5.29193 5.32473 5.33984 5.47895 5.51274 5.56137 5.62506 5.66259 5.68469 5.73252 5.75120 5.84103 5.88261 5.89284 5.97702 6.06754 6.09547 6.21162 6.21542 6.31174 6.39230 6.43639 7.19682 7.27922 7.39199 7.56404 7.59636 7.99233 8.08264 8.64021 9.20232 9.56773 10.09196 10.77437 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016572 B = 0.002286 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.196546 B =12246.643003 C =12946.207543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 H 0.031 0.969 4 C -0.117 4.117 5 C 0.142 3.858 6 H 0.089 0.911 7 N -0.719 5.719 8 C 0.519 3.481 9 O -0.544 6.544 10 C -0.174 4.174 11 C 0.146 3.854 12 C -0.140 4.140 13 C -0.188 4.188 14 O -0.567 6.567 15 C -0.123 4.123 16 C 0.064 3.936 17 N -0.507 5.507 18 C 0.039 3.961 19 C 0.445 3.555 20 O -0.575 6.575 21 N -0.568 5.568 22 C -0.296 4.296 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.904 5.904 26 Si 0.929 3.071 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.399 0.601 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.388 0.612 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.021 0.979 49 H 0.046 0.954 50 H 0.094 0.906 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 9.611 -21.212 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 H 0.049 0.951 4 C -0.155 4.155 5 C 0.038 3.962 6 H 0.107 0.893 7 N -0.371 5.371 8 C 0.307 3.693 9 O -0.424 6.424 10 C -0.215 4.215 11 C 0.105 3.895 12 C -0.198 4.198 13 C -0.246 4.246 14 O -0.378 6.378 15 C -0.161 4.161 16 C -0.064 4.064 17 N -0.232 5.232 18 C -0.092 4.092 19 C 0.230 3.770 20 O -0.458 6.458 21 N -0.205 5.205 22 C -0.426 4.426 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.756 3.244 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.234 0.766 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.241 0.759 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.109 0.891 48 H 0.039 0.961 49 H 0.064 0.936 50 H 0.112 0.888 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.595 8.342 -21.430 23.923 hybrid contribution -0.724 0.808 1.170 1.596 sum 5.871 9.150 -20.259 22.992 Atomic orbital electron populations 1.21957 0.94125 1.03353 1.01410 1.21586 0.95727 0.94568 0.90853 0.95140 1.21927 0.93534 1.03144 0.96906 1.21106 0.93807 0.81962 0.99300 0.89285 1.46239 1.16900 1.10145 1.63766 1.20631 0.81351 0.91107 0.76253 1.90530 1.56607 1.47076 1.48172 1.22537 0.99644 0.94763 1.04507 1.20798 0.86355 0.91801 0.90572 1.21780 1.02031 0.93297 1.02659 1.22677 1.02373 1.03541 0.95978 1.86414 1.49176 1.25593 1.76638 1.21927 1.00308 1.00715 0.93189 1.22049 0.86669 0.97805 0.99864 1.61497 1.07233 1.54210 1.00252 1.21974 1.00886 0.95755 0.90567 1.19776 0.84696 0.88939 0.83554 1.90516 1.47979 1.24336 1.82962 1.41875 1.53167 1.17718 1.07757 1.19681 1.36540 0.98757 0.87623 0.87985 1.25242 0.96893 0.97106 0.98781 1.69607 1.40040 1.20811 1.24081 0.85876 0.77722 0.80485 0.80320 1.20467 1.20965 1.19433 0.92185 0.92325 0.91093 0.91134 0.89104 0.76639 0.87931 0.88240 0.91487 0.91258 0.91868 0.89895 0.92470 0.92065 0.75881 0.89736 0.91290 0.89128 0.96076 0.93584 0.88846 0.77626 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.58 37.16 0.32 -1.25 16 2 C 0.08 0.90 2.28 -67.73 -0.15 0.74 16 3 H 0.03 0.30 6.64 -51.93 -0.34 -0.04 16 4 C -0.12 -1.12 5.03 -26.66 -0.13 -1.25 16 5 C 0.14 1.48 2.80 -67.81 -0.19 1.29 16 6 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 7 N -0.72 -6.40 4.35 -53.69 -0.23 -6.63 16 8 C 0.52 5.07 7.27 -10.98 -0.08 4.99 16 9 O -0.54 -6.74 11.41 -13.70 -0.16 -6.90 16 10 C -0.17 -1.31 4.98 -27.88 -0.14 -1.45 16 11 C 0.15 1.31 1.11 -90.62 -0.10 1.21 16 12 C -0.14 -1.02 8.84 37.16 0.33 -0.69 16 13 C -0.19 -1.63 8.50 37.16 0.32 -1.32 16 14 O -0.57 -6.75 12.95 -54.50 -0.71 -7.45 16 15 C -0.12 -1.60 5.76 -26.65 -0.15 -1.76 16 16 C 0.06 0.96 4.96 -3.83 -0.02 0.95 16 17 N -0.51 -7.71 4.06 -228.13 -0.93 -8.63 16 18 C 0.04 0.67 5.31 -4.98 -0.03 0.64 16 19 C 0.45 10.30 7.49 -10.99 -0.08 10.22 16 20 O -0.57 -15.31 14.73 5.54 0.08 -15.23 16 21 N -0.57 -14.22 5.29 -10.97 -0.06 -14.28 16 22 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 26 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.06 0.63 6.39 -51.93 -0.33 0.30 16 31 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.40 2.92 7.01 -40.82 -0.29 2.63 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.87 5.68 -51.93 -0.29 0.57 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.39 4.67 6.38 45.56 0.29 4.96 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.09 1.72 6.69 -51.93 -0.35 1.37 16 48 H 0.02 0.29 7.69 -51.93 -0.40 -0.11 16 49 H 0.05 0.73 8.00 -51.93 -0.42 0.31 16 50 H 0.09 1.43 5.43 -51.93 -0.28 1.15 16 51 H 0.39 9.36 7.90 -40.82 -0.32 9.03 16 52 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 401.50 15.07 6.05 6.05 Total: -1.00 -32.16 401.50 -8.73 -40.90 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -8.13 Total: 15.46 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -0.36 Total: 4.42 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.49 Total: -53.31 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.78 Total: -29.58 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.16 -8.73 -40.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724994304.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.013 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds