Wall clock time and date at job start Wed Apr 1 2020 00:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46067 * 2 1 4 4 C 1.53030 * 109.46812 * 240.03534 * 2 1 3 5 5 C 1.53117 * 109.28172 * 180.80173 * 4 2 1 6 6 H 1.08999 * 109.57630 * 177.58863 * 5 4 2 7 7 N 1.46495 * 109.52130 * 297.74478 * 5 4 2 8 8 C 1.34781 * 120.00000 * 204.67862 * 7 5 4 9 9 O 1.21277 * 119.99814 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99821 * 180.02562 * 8 7 5 11 11 C 1.52999 * 109.46719 * 184.66850 * 10 8 7 12 12 C 1.53002 * 109.46954 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47119 * 59.94868 * 11 10 8 14 14 O 1.42891 * 109.47629 * 299.94692 * 11 10 8 15 15 C 1.53116 * 109.15966 * 57.65375 * 5 4 2 16 16 C 1.53045 * 109.27888 * 302.34332 * 15 5 4 17 17 N 1.46847 * 109.46338 * 119.97309 * 2 1 3 18 18 C 1.46898 * 111.00468 * 305.86159 * 17 2 1 19 19 C 1.50692 * 109.47108 * 160.27520 * 18 17 2 20 20 O 1.21295 * 120.00459 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99977 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00068 * 180.02562 * 21 19 18 23 23 H 1.07989 * 120.00057 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99848 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00240 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 119.99875 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47190 * 90.00166 * 26 24 22 28 28 H 1.48508 * 109.47517 * 209.99830 * 26 24 22 29 29 H 1.48497 * 109.47391 * 330.00036 * 26 24 22 30 30 H 1.08993 * 109.47613 * 307.90458 * 1 2 3 31 31 H 1.09002 * 109.47352 * 67.90787 * 1 2 3 32 32 H 1.09006 * 109.46689 * 187.90017 * 1 2 3 33 33 H 1.09000 * 109.50357 * 60.85660 * 4 2 1 34 34 H 1.09008 * 109.50113 * 300.74236 * 4 2 1 35 35 H 0.97001 * 120.00393 * 24.68576 * 7 5 4 36 36 H 1.08999 * 109.46883 * 64.67063 * 10 8 7 37 37 H 1.08999 * 109.47169 * 304.67004 * 10 8 7 38 38 H 1.09003 * 109.47330 * 175.08427 * 12 11 10 39 39 H 1.08996 * 109.47289 * 295.08706 * 12 11 10 40 40 H 1.09001 * 109.47130 * 55.08794 * 12 11 10 41 41 H 1.08994 * 109.46775 * 299.99859 * 13 11 10 42 42 H 1.09004 * 109.47077 * 59.99667 * 13 11 10 43 43 H 1.08997 * 109.47308 * 179.97438 * 13 11 10 44 44 H 0.96696 * 114.00150 * 60.00037 * 14 11 10 45 45 H 1.08992 * 109.50819 * 62.28448 * 15 5 4 46 46 H 1.09002 * 109.50286 * 182.37123 * 15 5 4 47 47 H 1.08997 * 109.46417 * 179.19916 * 16 15 5 48 48 H 1.08998 * 109.46211 * 299.16687 * 16 15 5 49 49 H 1.09000 * 109.46672 * 280.27759 * 18 17 2 50 50 H 1.08998 * 109.46652 * 40.27783 * 18 17 2 51 51 H 0.97003 * 119.99752 * 0.02562 * 21 19 18 52 52 H 0.96996 * 120.00270 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7206 -1.2500 5 6 3.5710 -0.7357 -1.2356 6 1 3.9390 -1.2852 -2.1020 7 7 4.0745 0.6394 -1.2780 8 6 5.3065 0.8913 -1.7631 9 8 5.9980 -0.0204 -2.1649 10 6 5.8246 2.3058 -1.8062 11 6 7.1870 2.3288 -2.5022 12 6 7.7128 3.7649 -2.5465 13 6 7.0402 1.7946 -3.9284 14 8 8.1057 1.5080 -1.7783 15 6 4.0548 -1.4186 0.0466 16 6 3.4865 -0.6776 1.2591 17 7 2.0193 -0.6917 1.1994 18 6 1.4372 -0.1107 2.4166 19 6 1.5526 -1.0980 3.5492 20 8 2.0693 -2.1791 3.3612 21 7 1.0826 -0.7793 4.7715 22 6 1.1880 -1.6773 5.8021 23 1 1.6480 -2.6398 5.6346 24 6 0.7029 -1.3488 7.0621 25 7 0.1426 -0.1777 7.2658 26 14 0.8459 -2.5726 8.4661 27 1 2.1313 -2.3604 9.1787 28 1 -0.2824 -2.3756 9.4114 29 1 0.8024 -3.9546 7.9245 30 1 -0.3634 0.6313 0.8108 31 1 -0.3634 0.3865 -0.9522 32 1 -0.3633 -1.0180 0.1413 33 1 1.6895 -0.1979 -2.1399 34 1 1.6660 -1.7445 -1.2577 35 1 3.5213 1.3686 -0.9569 36 1 5.9294 2.6854 -0.7898 37 1 5.1241 2.9327 -2.3578 38 1 8.7201 3.7704 -2.9629 39 1 7.0580 4.3725 -3.1712 40 1 7.7349 4.1751 -1.5368 41 1 6.6658 0.7714 -3.8963 42 1 6.3394 2.4208 -4.4806 43 1 8.0106 1.8114 -4.4244 44 1 7.8360 0.5819 -1.7097 45 1 3.7126 -2.4533 0.0593 46 1 5.1440 -1.3949 0.0828 47 1 3.8175 -1.1698 2.1736 48 1 3.8403 0.3534 1.2533 49 1 1.9727 0.8029 2.6749 50 1 0.3865 0.1208 2.2420 51 1 0.6697 0.0855 4.9220 52 1 -0.1964 0.0514 8.1452 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724994304.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:01 Heat of formation + Delta-G solvation = -152.421391 kcal Electronic energy + Delta-G solvation = -31225.454531 eV Core-core repulsion = 27030.456874 eV Total energy + Delta-G solvation = -4194.997657 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67140 -40.62254 -39.51920 -38.17580 -36.13315 -35.69928 -33.81137 -33.34071 -33.26337 -32.66287 -29.58622 -28.47919 -28.18087 -27.90730 -26.33190 -24.17629 -22.80591 -22.18936 -21.16216 -20.95229 -20.07795 -19.82725 -18.26702 -17.84304 -17.64125 -16.93843 -16.73291 -16.62172 -16.52717 -16.20967 -15.84883 -15.58691 -15.49661 -15.38495 -15.09008 -14.75784 -14.22160 -14.02374 -13.93851 -13.57772 -13.45502 -13.36225 -13.13805 -13.06619 -13.03202 -12.89636 -12.83856 -12.75161 -12.71389 -12.43850 -12.41190 -12.33164 -12.13234 -11.93194 -11.88640 -11.70255 -11.44507 -11.15674 -10.92267 -10.69402 -10.31411 -10.04466 -9.97493 -9.11371 -8.45318 -5.93302 1.37304 1.40759 1.53192 1.59520 2.09929 2.17890 2.28725 2.74266 3.21492 3.36267 3.42789 3.61705 3.71159 3.79693 3.84329 3.96534 4.08228 4.12128 4.24628 4.29984 4.35511 4.41594 4.44166 4.47899 4.54719 4.56012 4.64908 4.77066 4.79312 4.82244 4.85913 4.93080 4.98272 5.00412 5.03688 5.06052 5.11206 5.18553 5.25273 5.29332 5.41324 5.41922 5.44078 5.56981 5.92703 6.12476 6.32317 6.52037 6.63777 6.77641 7.15839 7.26555 7.60329 8.17335 8.72132 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016572 B = 0.002286 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.196546 B =12246.643003 C =12946.207543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.057 0.943 4 C -0.108 4.108 5 C 0.153 3.847 6 H 0.085 0.915 7 N -0.710 5.710 8 C 0.515 3.485 9 O -0.574 6.574 10 C -0.166 4.166 11 C 0.134 3.866 12 C -0.139 4.139 13 C -0.183 4.183 14 O -0.588 6.588 15 C -0.116 4.116 16 C 0.072 3.928 17 N -0.527 5.527 18 C 0.053 3.947 19 C 0.441 3.559 20 O -0.616 6.616 21 N -0.578 5.578 22 C -0.329 4.329 23 H 0.075 0.925 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.989 3.011 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.275 1.275 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.410 0.590 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.383 0.617 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.042 0.958 48 H 0.038 0.962 49 H 0.065 0.935 50 H 0.117 0.883 51 H 0.395 0.605 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.516 12.093 -22.618 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 H 0.074 0.926 4 C -0.147 4.147 5 C 0.048 3.952 6 H 0.103 0.897 7 N -0.362 5.362 8 C 0.304 3.696 9 O -0.455 6.455 10 C -0.206 4.206 11 C 0.093 3.907 12 C -0.196 4.196 13 C -0.241 4.241 14 O -0.400 6.400 15 C -0.155 4.155 16 C -0.056 4.056 17 N -0.253 5.253 18 C -0.078 4.078 19 C 0.229 3.771 20 O -0.501 6.501 21 N -0.216 5.216 22 C -0.459 4.459 23 H 0.093 0.907 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.813 3.187 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.200 1.200 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.248 0.752 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.235 0.765 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.083 0.917 50 H 0.134 0.866 51 H 0.229 0.771 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.400 10.876 -22.848 25.874 hybrid contribution -0.320 0.019 1.547 1.580 sum 5.079 10.894 -21.301 24.459 Atomic orbital electron populations 1.21959 0.93305 1.02247 1.03157 1.21761 0.96332 0.95565 0.89088 0.92560 1.21899 0.92348 1.02922 0.97481 1.20876 0.94547 0.82632 0.97130 0.89675 1.46100 1.16892 1.09672 1.63493 1.21095 0.81145 0.91829 0.75572 1.90535 1.57361 1.48243 1.49391 1.22522 0.99291 0.93539 1.05255 1.21117 0.86882 0.92175 0.90506 1.21814 1.02164 0.92395 1.03216 1.22612 1.02481 1.02789 0.96182 1.86401 1.50671 1.25574 1.77330 1.21821 0.99505 0.99910 0.94249 1.21859 0.87103 0.98260 0.98398 1.61409 1.07020 1.55812 1.01051 1.21817 1.02783 0.94139 0.89035 1.20938 0.82504 0.89411 0.84274 1.90488 1.49232 1.26632 1.83763 1.41945 1.53953 1.17576 1.08141 1.19604 1.38202 0.98754 0.89357 0.90650 1.25979 0.96070 0.98827 1.00422 1.69661 1.39933 1.21706 1.24911 0.84979 0.78246 0.77971 0.77457 1.19788 1.19444 1.19961 0.92232 0.89205 0.93203 0.87826 0.90246 0.75242 0.87282 0.84853 0.92360 0.88599 0.91856 0.91889 0.90258 0.92721 0.76451 0.91660 0.92360 0.93968 0.94407 0.91664 0.86563 0.77099 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.58 71.98 0.62 -2.01 16 2 C 0.08 1.53 2.28 44.93 0.10 1.63 16 3 H 0.06 0.84 6.64 -2.38 -0.02 0.82 16 4 C -0.11 -1.78 5.03 30.64 0.15 -1.62 16 5 C 0.15 2.95 2.80 45.07 0.13 3.08 16 6 H 0.09 1.78 7.58 -2.39 -0.02 1.76 16 7 N -0.71 -10.72 4.35 -442.17 -1.92 -12.65 16 8 C 0.51 9.10 7.27 87.66 0.64 9.73 16 9 O -0.57 -14.00 11.41 15.40 0.18 -13.83 16 10 C -0.17 -2.03 4.98 29.85 0.15 -1.88 16 11 C 0.13 2.17 1.11 -10.79 -0.01 2.16 16 12 C -0.14 -1.69 8.84 71.98 0.64 -1.05 16 13 C -0.18 -2.91 8.50 71.98 0.61 -2.30 16 14 O -0.59 -13.99 12.95 -130.56 -1.69 -15.68 16 15 C -0.12 -3.10 5.76 30.65 0.18 -2.92 16 16 C 0.07 2.19 4.96 86.33 0.43 2.61 16 17 N -0.53 -15.61 4.06 -875.67 -3.55 -19.16 16 18 C 0.05 1.76 5.31 85.55 0.45 2.21 16 19 C 0.44 20.94 7.49 87.65 0.66 21.60 16 20 O -0.62 -34.36 14.73 -3.08 -0.05 -34.40 16 21 N -0.58 -29.66 5.29 -306.99 -1.62 -31.29 16 22 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 23 H 0.08 4.63 7.16 -2.92 -0.02 4.61 16 24 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 25 N -0.92 -49.69 13.05 21.66 0.28 -49.40 16 26 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 30 H 0.06 1.06 6.39 -2.39 -0.02 1.04 16 31 H 0.09 1.05 8.13 -2.39 -0.02 1.03 16 32 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.41 4.31 7.01 -92.71 -0.65 3.66 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 1.28 5.68 -2.39 -0.01 1.27 16 42 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.38 9.55 6.38 -74.06 -0.47 9.07 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.04 1.69 6.69 -2.39 -0.02 1.67 16 48 H 0.04 1.00 7.69 -2.39 -0.02 0.99 16 49 H 0.07 1.93 8.00 -2.39 -0.02 1.91 16 50 H 0.12 3.34 5.43 -2.39 -0.01 3.32 16 51 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 52 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -73.70 401.50 -1.23 -74.93 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: -0.91 Total: 43.08 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.02 Total: 12.95 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -6.81 Total: -112.49 kcal Atomic # 8 Polarization: -62.35 SS G_CDS: -1.56 Total: -63.91 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -73.70 -1.23 -74.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724994304.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.487 kcal (2) G-P(sol) polarization free energy of solvation -73.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds