Wall clock time and date at job start Wed Apr 1 2020 00:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.45813 * 2 1 4 4 C 1.53035 * 109.46091 * 119.96789 * 2 1 3 5 5 C 1.53121 * 109.28073 * 179.19717 * 4 2 1 6 6 H 1.08993 * 109.52194 * 182.43768 * 5 4 2 7 7 N 1.46501 * 109.52016 * 62.31289 * 5 4 2 8 8 C 1.34775 * 119.99844 * 155.00384 * 7 5 4 9 9 O 1.21285 * 120.00360 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99998 * 179.97438 * 8 7 5 11 11 C 1.53001 * 109.47247 * 175.93193 * 10 8 7 12 12 C 1.53005 * 109.46668 * 63.76546 * 11 10 8 13 13 C 1.52997 * 109.47283 * 183.76242 * 11 10 8 14 14 O 1.42897 * 109.47122 * 303.76517 * 11 10 8 15 15 C 1.53118 * 109.15919 * 302.34501 * 5 4 2 16 16 C 1.53041 * 109.27862 * 57.65188 * 15 5 4 17 17 N 1.46847 * 109.46320 * 240.01910 * 2 1 3 18 18 C 1.46896 * 110.99877 * 54.14864 * 17 2 1 19 19 C 1.50702 * 109.47249 * 64.15485 * 18 17 2 20 20 O 1.21282 * 119.99977 * 354.32956 * 19 18 17 21 21 N 1.34780 * 119.99831 * 174.33009 * 19 18 17 22 22 C 1.37098 * 120.00012 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99790 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00105 * 180.02562 * 22 21 19 25 25 N 1.31417 * 119.99814 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99819 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46779 * 269.99589 * 26 24 22 28 28 H 1.48507 * 109.47279 * 150.00102 * 26 24 22 29 29 H 1.48498 * 109.47622 * 29.99800 * 26 24 22 30 30 H 1.09000 * 109.46964 * 179.42792 * 1 2 3 31 31 H 1.08998 * 109.47339 * 299.42809 * 1 2 3 32 32 H 1.09002 * 109.46445 * 59.43070 * 1 2 3 33 33 H 1.09004 * 109.50486 * 299.13664 * 4 2 1 34 34 H 1.08999 * 109.50646 * 59.24969 * 4 2 1 35 35 H 0.96995 * 120.00021 * 334.99994 * 7 5 4 36 36 H 1.08998 * 109.47378 * 295.93185 * 10 8 7 37 37 H 1.08999 * 109.47133 * 55.93418 * 10 8 7 38 38 H 1.08997 * 109.47453 * 60.00279 * 12 11 10 39 39 H 1.09004 * 109.46965 * 180.02562 * 12 11 10 40 40 H 1.08998 * 109.47014 * 299.99918 * 12 11 10 41 41 H 1.09005 * 109.47111 * 64.85162 * 13 11 10 42 42 H 1.09000 * 109.47220 * 184.85211 * 13 11 10 43 43 H 1.09003 * 109.47557 * 304.84885 * 13 11 10 44 44 H 0.96702 * 114.00035 * 60.00083 * 14 11 10 45 45 H 1.08999 * 109.50478 * 177.59129 * 15 5 4 46 46 H 1.08994 * 109.50595 * 297.67522 * 15 5 4 47 47 H 1.08995 * 109.46187 * 180.80503 * 16 15 5 48 48 H 1.08997 * 109.46114 * 60.83690 * 16 15 5 49 49 H 1.09003 * 109.47410 * 304.15490 * 18 17 2 50 50 H 1.09000 * 109.46890 * 184.15529 * 18 17 2 51 51 H 0.97007 * 120.00042 * 0.02562 * 21 19 18 52 52 H 0.97000 * 119.99580 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5710 -0.7359 1.2358 6 1 3.9378 -1.2860 2.1022 7 7 4.0746 0.6391 1.2797 8 6 5.3040 0.8911 1.7711 9 8 5.9933 -0.0204 2.1774 10 6 5.8223 2.3055 1.8157 11 6 7.1878 2.3267 2.5056 12 6 8.1917 1.5256 1.6740 13 6 7.6714 3.7725 2.6349 14 8 7.0738 1.7444 3.8055 15 6 4.0549 -1.4188 -0.0464 16 6 3.4866 -0.6778 -1.2589 17 7 2.0193 -0.6919 -1.1993 18 6 1.4374 -0.1108 -2.4165 19 6 1.9004 1.3159 -2.5630 20 8 2.5573 1.8335 -1.6847 21 7 1.5844 2.0165 -3.6702 22 6 2.0051 3.3145 -3.8033 23 1 2.5894 3.7757 -3.0208 24 6 1.6790 4.0370 -4.9445 25 7 0.9676 3.4759 -5.8965 26 14 2.2528 5.8053 -5.1261 27 1 1.2296 6.7187 -4.5568 28 1 2.4488 6.1169 -6.5648 29 1 3.5361 5.9863 -4.4012 30 1 -0.3633 -1.0276 -0.0103 31 1 -0.3634 0.5049 0.8950 32 1 -0.3632 0.5227 -0.8849 33 1 1.6895 -0.1979 2.1400 34 1 1.6659 -1.7445 1.2579 35 1 3.5232 1.3681 0.9551 36 1 5.9224 2.6880 0.8000 37 1 5.1243 2.9308 2.3724 38 1 8.2786 1.9698 0.6825 39 1 9.1644 1.5404 2.1657 40 1 7.8471 0.4957 1.5819 41 1 7.0023 4.3215 3.2977 42 1 8.6803 3.7826 3.0474 43 1 7.6760 4.2435 1.6519 44 1 6.7712 0.8260 3.8000 45 1 5.1440 -1.3947 -0.0829 46 1 3.7132 -2.4537 -0.0588 47 1 3.8176 -1.1701 -2.1733 48 1 3.8404 0.3531 -1.2531 49 1 0.3499 -0.1345 -2.3464 50 1 1.7583 -0.6878 -3.2838 51 1 1.0587 1.6026 -4.3726 52 1 0.6700 2.5575 -5.8022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724994305.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:05 Heat of formation + Delta-G solvation = -150.307960 kcal Electronic energy + Delta-G solvation = -32307.458443 eV Core-core repulsion = 28112.552431 eV Total energy + Delta-G solvation = -4194.906012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80586 -40.95036 -39.39640 -38.16637 -36.46090 -35.63705 -33.82417 -33.36812 -33.18990 -32.63980 -29.58940 -28.39676 -28.23191 -27.86062 -26.17279 -24.08702 -22.86496 -22.33574 -21.39119 -21.20510 -20.16538 -19.80056 -18.29199 -18.06831 -17.66543 -17.08305 -16.79406 -16.68106 -16.55537 -16.16818 -16.07725 -15.63365 -15.51591 -15.47137 -15.20174 -14.58737 -14.43001 -14.22115 -13.64398 -13.54341 -13.34220 -13.29022 -13.20175 -13.11932 -12.97327 -12.87602 -12.81620 -12.77643 -12.63626 -12.58086 -12.35926 -11.96882 -11.96032 -11.93411 -11.81697 -11.63964 -11.33280 -11.15211 -10.98826 -10.93694 -10.69906 -10.07414 -10.04231 -8.97971 -8.89009 -6.04431 1.50426 1.53331 1.53650 1.78895 2.00210 2.20145 2.41600 2.92391 3.09822 3.18525 3.29000 3.57217 3.69666 3.78298 3.82682 3.98198 4.02272 4.13656 4.22274 4.23172 4.38303 4.39715 4.48056 4.54840 4.56048 4.57459 4.64621 4.71357 4.75894 4.77302 4.86719 4.90383 4.91652 4.96372 5.01127 5.03961 5.10206 5.19992 5.22224 5.24533 5.36124 5.44674 5.56920 5.62913 5.96160 6.00087 6.15145 6.46285 6.57647 6.72870 6.76711 7.18071 7.46697 7.92711 8.56605 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009288 B = 0.003714 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.833239 B = 7537.991460 C = 9788.525972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 H 0.053 0.947 4 C -0.106 4.106 5 C 0.145 3.855 6 H 0.089 0.911 7 N -0.712 5.712 8 C 0.518 3.482 9 O -0.570 6.570 10 C -0.171 4.171 11 C 0.143 3.857 12 C -0.184 4.184 13 C -0.139 4.139 14 O -0.579 6.579 15 C -0.113 4.113 16 C 0.042 3.958 17 N -0.494 5.494 18 C 0.042 3.958 19 C 0.417 3.583 20 O -0.606 6.606 21 N -0.586 5.586 22 C -0.402 4.402 23 H 0.076 0.924 24 C -0.043 4.043 25 N -0.920 5.920 26 Si 1.132 2.868 27 H -0.272 1.272 28 H -0.277 1.277 29 H -0.276 1.276 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.405 0.595 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.383 0.617 45 H 0.055 0.945 46 H 0.090 0.910 47 H 0.060 0.940 48 H 0.043 0.957 49 H 0.113 0.887 50 H 0.100 0.900 51 H 0.381 0.619 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.830 -6.967 13.440 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.050 4.050 3 H 0.071 0.929 4 C -0.144 4.144 5 C 0.040 3.960 6 H 0.107 0.893 7 N -0.362 5.362 8 C 0.307 3.693 9 O -0.453 6.453 10 C -0.211 4.211 11 C 0.102 3.898 12 C -0.241 4.241 13 C -0.196 4.196 14 O -0.391 6.391 15 C -0.151 4.151 16 C -0.086 4.086 17 N -0.217 5.217 18 C -0.089 4.089 19 C 0.205 3.795 20 O -0.492 6.492 21 N -0.225 5.225 22 C -0.532 4.532 23 H 0.094 0.906 24 C -0.241 4.241 25 N -0.560 5.560 26 Si 0.952 3.048 27 H -0.197 1.197 28 H -0.203 1.203 29 H -0.201 1.201 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.242 0.758 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.236 0.764 45 H 0.074 0.926 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.062 0.938 49 H 0.131 0.869 50 H 0.118 0.882 51 H 0.215 0.785 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.744 -5.879 13.512 15.481 hybrid contribution -0.491 -0.891 -0.309 1.063 sum 4.253 -6.770 13.203 15.435 Atomic orbital electron populations 1.21857 0.93739 1.02772 1.01540 1.21888 0.95900 0.97256 0.89911 0.92928 1.21871 0.92626 1.03054 0.96862 1.21044 0.94578 0.82161 0.98179 0.89262 1.46290 1.16958 1.10439 1.62542 1.20858 0.81204 0.91421 0.75851 1.90494 1.56922 1.47761 1.50084 1.22517 0.99805 0.94154 1.04661 1.20974 0.91585 0.94680 0.82601 1.22618 0.99571 1.01788 1.00167 1.21807 1.02101 0.92342 1.03381 1.86381 1.90433 1.33318 1.28943 1.21839 0.99436 1.00286 0.93581 1.22180 0.87885 1.00183 0.98339 1.62538 1.07049 1.51200 1.00892 1.22231 1.02122 0.89183 0.95414 1.22020 0.84321 0.90435 0.82744 1.90350 1.44363 1.72670 1.41851 1.42227 1.48896 1.12621 1.18714 1.20505 1.35474 0.90066 1.07165 0.90590 1.27692 0.95597 1.09838 0.91023 1.70946 1.35500 1.15133 1.34407 0.82627 0.76427 0.69027 0.76678 1.19732 1.20257 1.20146 0.90551 0.91293 0.94217 0.89924 0.88330 0.75848 0.87536 0.87318 0.91622 0.91801 0.91544 0.91613 0.91350 0.89744 0.76396 0.92643 0.89179 0.92195 0.93848 0.86907 0.88192 0.78511 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.75 71.98 0.63 -2.66 16 2 C 0.06 1.54 1.89 44.94 0.08 1.63 16 3 H 0.05 1.75 4.15 -2.39 -0.01 1.74 16 4 C -0.11 -2.20 5.03 30.65 0.15 -2.05 16 5 C 0.14 3.39 2.80 45.07 0.13 3.52 16 6 H 0.09 2.08 7.58 -2.39 -0.02 2.07 16 7 N -0.71 -18.22 4.35 -442.16 -1.92 -20.15 16 8 C 0.52 13.66 7.31 87.66 0.64 14.30 16 9 O -0.57 -16.75 11.39 15.35 0.17 -16.57 16 10 C -0.17 -3.96 4.96 29.85 0.15 -3.81 16 11 C 0.14 3.31 1.11 -10.79 -0.01 3.30 16 12 C -0.18 -4.33 8.55 71.98 0.62 -3.71 16 13 C -0.14 -2.67 8.84 71.98 0.64 -2.04 16 14 O -0.58 -15.53 12.93 -130.59 -1.69 -17.22 16 15 C -0.11 -2.84 5.77 30.65 0.18 -2.66 16 16 C 0.04 1.27 4.86 86.33 0.42 1.69 16 17 N -0.49 -13.84 4.69 -875.64 -4.11 -17.95 16 18 C 0.04 1.31 5.43 85.56 0.46 1.78 16 19 C 0.42 17.45 7.18 87.66 0.63 18.08 16 20 O -0.61 -27.74 11.22 -3.04 -0.03 -27.77 16 21 N -0.59 -27.61 5.28 -306.98 -1.62 -29.23 16 22 C -0.40 -21.56 9.68 84.04 0.81 -20.74 16 23 H 0.08 4.34 7.16 -2.91 -0.02 4.32 16 24 C -0.04 -2.25 5.50 84.93 0.47 -1.78 16 25 N -0.92 -49.97 13.69 21.66 0.30 -49.67 16 26 Si 1.13 46.85 29.92 68.60 2.05 48.90 16 27 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 28 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 29 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 32 H 0.04 1.05 6.27 -2.39 -0.01 1.04 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.41 11.21 7.01 -92.71 -0.65 10.56 16 36 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.07 1.81 5.70 -2.39 -0.01 1.80 16 41 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.38 10.29 6.36 -74.06 -0.47 9.82 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 48 H 0.04 1.61 5.26 -2.39 -0.01 1.60 16 49 H 0.11 3.14 5.98 -2.39 -0.01 3.12 16 50 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 51 H 0.38 16.91 6.73 -92.70 -0.62 16.29 16 52 H 0.26 13.62 6.77 -92.71 -0.63 12.99 16 Total: -1.00 -63.17 393.53 -1.51 -64.68 By element: Atomic # 1 Polarization: 60.77 SS G_CDS: -0.65 Total: 60.12 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.99 Total: 4.86 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -7.36 Total: -117.00 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: -1.55 Total: -61.56 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.05 Total: 48.90 kcal Total: -63.17 -1.51 -64.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724994305.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.631 kcal (2) G-P(sol) polarization free energy of solvation -63.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds