Wall clock time and date at job start Wed Apr 1 2020 00:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45272 * 2 1 4 4 C 1.53042 * 109.46052 * 119.97138 * 2 1 3 5 5 C 1.53110 * 109.27893 * 179.19868 * 4 2 1 6 6 H 1.09001 * 109.52616 * 62.24894 * 5 4 2 7 7 N 1.46499 * 109.57829 * 182.41236 * 5 4 2 8 8 C 1.34771 * 120.00088 * 204.71812 * 7 5 4 9 9 O 1.21282 * 120.00319 * 359.97438 * 8 7 5 10 10 C 1.50703 * 120.00044 * 179.97438 * 8 7 5 11 11 C 1.52998 * 109.47223 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46746 * 60.00524 * 11 10 8 13 13 C 1.53002 * 109.47294 * 179.97438 * 11 10 8 14 14 O 1.42900 * 109.47383 * 300.00258 * 11 10 8 15 15 C 1.53127 * 109.15827 * 302.34382 * 5 4 2 16 16 C 1.53034 * 109.30942 * 57.63951 * 15 5 4 17 17 N 1.46846 * 109.46475 * 240.02376 * 2 1 3 18 18 C 1.46901 * 110.99607 * 54.14872 * 17 2 1 19 19 C 1.50692 * 109.47651 * 65.47174 * 18 17 2 20 20 O 1.21300 * 119.99728 * 354.37014 * 19 18 17 21 21 N 1.34772 * 120.00162 * 174.36857 * 19 18 17 22 22 C 1.37104 * 119.99894 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99920 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00115 * 179.97438 * 22 21 19 25 25 N 1.31421 * 119.99987 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00478 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46829 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47401 * 119.99974 * 26 24 22 29 29 H 1.48493 * 109.47382 * 240.00679 * 26 24 22 30 30 H 1.09001 * 109.47630 * 293.65657 * 1 2 3 31 31 H 1.09003 * 109.46849 * 53.65497 * 1 2 3 32 32 H 1.08999 * 109.46912 * 173.64771 * 1 2 3 33 33 H 1.08998 * 109.50105 * 59.25520 * 4 2 1 34 34 H 1.09006 * 109.53579 * 299.15732 * 4 2 1 35 35 H 0.97002 * 120.00142 * 24.70641 * 7 5 4 36 36 H 1.08994 * 109.47397 * 299.99703 * 10 8 7 37 37 H 1.09003 * 109.46855 * 59.99868 * 10 8 7 38 38 H 1.08997 * 109.47699 * 59.99775 * 12 11 10 39 39 H 1.09000 * 109.47268 * 180.02562 * 12 11 10 40 40 H 1.09005 * 109.47009 * 299.99288 * 12 11 10 41 41 H 1.09004 * 109.46860 * 59.99936 * 13 11 10 42 42 H 1.08999 * 109.47266 * 179.97438 * 13 11 10 43 43 H 1.08997 * 109.47235 * 300.01000 * 13 11 10 44 44 H 0.96693 * 114.00036 * 299.99452 * 14 11 10 45 45 H 1.09002 * 109.49996 * 177.59532 * 15 5 4 46 46 H 1.08996 * 109.50607 * 297.67433 * 15 5 4 47 47 H 1.09001 * 109.46806 * 60.84903 * 16 15 5 48 48 H 1.09002 * 109.46620 * 180.82487 * 16 15 5 49 49 H 1.09000 * 109.46651 * 185.47775 * 18 17 2 50 50 H 1.08998 * 109.47326 * 305.46963 * 18 17 2 51 51 H 0.97001 * 120.00556 * 0.02562 * 21 19 18 52 52 H 0.96998 * 120.00069 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5708 -0.7360 1.2358 6 1 3.9456 0.2871 1.2674 7 7 4.0654 -1.4747 2.4002 8 6 5.2972 -1.2221 2.8851 9 8 5.9966 -0.3836 2.3572 10 6 5.8057 -1.9817 4.0833 11 6 7.2194 -1.5073 4.4255 12 6 7.1921 -0.0111 4.7442 13 6 7.7354 -2.2779 5.6424 14 8 8.0832 -1.7414 3.3115 15 6 4.0547 -1.4188 -0.0466 16 6 3.4865 -0.6785 -1.2595 17 7 2.0193 -0.6918 -1.1993 18 6 1.4374 -0.1105 -2.4165 19 6 1.9259 1.3056 -2.5802 20 8 2.6013 1.8182 -1.7128 21 7 1.6125 2.0024 -3.6904 22 6 2.0566 3.2910 -3.8391 23 1 2.6578 3.7475 -3.0667 24 6 1.7339 4.0094 -4.9839 25 7 1.0027 3.4538 -5.9239 26 14 2.3395 5.7647 -5.1868 27 1 3.1380 6.1536 -3.9966 28 1 3.1866 5.8587 -6.4028 29 1 1.1759 6.6772 -5.3224 30 1 -0.3634 0.4123 0.9413 31 1 -0.3633 0.6091 -0.8278 32 1 -0.3633 -1.0214 -0.1137 33 1 1.6659 -1.7446 1.2577 34 1 1.6894 -0.1987 2.1404 35 1 3.5061 -2.1455 2.8224 36 1 5.1467 -1.8034 4.9330 37 1 5.8255 -3.0476 3.8562 38 1 6.5333 0.1675 5.5939 39 1 8.1993 0.3270 4.9876 40 1 6.8244 0.5383 3.8775 41 1 7.7547 -3.3440 5.4159 42 1 8.7428 -1.9403 5.8860 43 1 7.0764 -2.0990 6.4920 44 1 8.1489 -2.6709 3.0533 45 1 5.1439 -1.3947 -0.0829 46 1 3.7131 -2.4538 -0.0590 47 1 3.8403 0.3525 -1.2543 48 1 3.8176 -1.1713 -2.1736 49 1 1.7392 -0.7014 -3.2813 50 1 0.3504 -0.1129 -2.3364 51 1 1.0722 1.5927 -4.3840 52 1 0.7778 3.9551 -6.7233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724994306.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:10 Heat of formation + Delta-G solvation = -125.994133 kcal Electronic energy + Delta-G solvation = -31226.778573 eV Core-core repulsion = 27032.926887 eV Total energy + Delta-G solvation = -4193.851685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.39012 -39.52391 -37.98015 -37.09819 -34.90861 -33.84466 -32.92654 -32.07680 -31.72775 -31.19225 -28.70826 -27.53554 -27.02664 -26.49179 -24.42975 -22.70555 -21.81080 -20.63956 -20.29487 -19.76054 -18.99857 -17.82009 -17.48505 -16.59095 -15.95549 -15.87375 -15.72397 -15.26190 -15.07991 -14.79530 -14.58643 -14.53344 -14.29050 -13.83018 -13.77901 -13.51510 -13.09711 -13.01882 -12.59557 -12.49341 -12.38143 -12.26668 -12.02963 -11.88773 -11.79647 -11.69202 -11.65143 -11.47287 -11.27215 -11.10759 -11.00272 -10.73837 -10.58811 -10.40533 -10.35260 -10.32125 -10.25503 -10.18524 -9.51356 -9.44732 -9.17932 -8.92515 -7.98405 -7.37512 -6.44554 -3.85652 2.66302 3.10284 3.14017 3.25588 3.33034 3.84037 4.03635 4.16141 4.32210 4.36216 4.50218 4.68780 4.83634 4.99464 5.00799 5.04493 5.09044 5.15323 5.20032 5.26264 5.30560 5.46782 5.54970 5.63595 5.65022 5.70906 5.74625 5.76084 5.80743 5.88056 5.88862 5.98485 6.05265 6.10953 6.18347 6.23130 6.27411 6.32716 6.36788 6.39912 6.60484 6.67954 6.83134 7.40724 7.51105 7.52640 7.53791 7.54618 8.02859 8.29664 8.57019 9.14442 9.50622 10.01223 10.72017 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.002375 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.772143 B =11786.135676 C =12867.671357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 H 0.085 0.915 4 C -0.111 4.111 5 C 0.146 3.854 6 H 0.088 0.912 7 N -0.730 5.730 8 C 0.508 3.492 9 O -0.512 6.512 10 C -0.171 4.171 11 C 0.145 3.855 12 C -0.154 4.154 13 C -0.179 4.179 14 O -0.542 6.542 15 C -0.116 4.116 16 C 0.039 3.961 17 N -0.509 5.509 18 C 0.037 3.963 19 C 0.407 3.593 20 O -0.592 6.592 21 N -0.557 5.557 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.899 5.899 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.367 0.633 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.086 0.914 50 H 0.093 0.907 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -15.952 19.444 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.041 4.041 3 H 0.102 0.898 4 C -0.149 4.149 5 C 0.042 3.958 6 H 0.106 0.894 7 N -0.381 5.381 8 C 0.294 3.706 9 O -0.386 6.386 10 C -0.211 4.211 11 C 0.103 3.897 12 C -0.211 4.211 13 C -0.236 4.236 14 O -0.346 6.346 15 C -0.155 4.155 16 C -0.089 4.089 17 N -0.233 5.233 18 C -0.095 4.095 19 C 0.192 3.808 20 O -0.479 6.479 21 N -0.193 5.193 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.540 5.540 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.213 0.787 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.105 0.895 50 H 0.111 0.889 51 H 0.226 0.774 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.504 -14.741 19.528 24.879 hybrid contribution -0.311 0.347 -0.547 0.719 sum 4.193 -14.394 18.982 24.188 Atomic orbital electron populations 1.21863 0.94941 1.01715 1.01610 1.21736 0.94730 0.98831 0.88843 0.89769 1.21844 0.93598 1.01405 0.98083 1.21042 0.93849 0.96714 0.84238 0.89363 1.46192 1.16876 1.42364 1.32689 1.20436 0.81451 0.83657 0.85061 1.90727 1.55451 1.32974 1.59494 1.22495 0.99442 1.01200 0.97985 1.20887 0.86533 0.96574 0.85666 1.22003 1.02324 0.93690 1.03068 1.22528 1.02448 1.00196 0.98444 1.86746 1.67406 1.30423 1.50007 1.21877 1.00266 0.99435 0.93970 1.22258 0.87555 1.02114 0.96951 1.62484 1.07599 1.52023 1.01214 1.22109 1.00733 0.92778 0.93835 1.21111 0.86324 0.89019 0.84305 1.90418 1.43551 1.71448 1.42473 1.42065 1.46221 1.13347 1.17620 1.19764 1.30265 0.88691 1.04268 0.87924 1.25284 0.96839 1.00381 0.95393 1.69621 1.37453 1.38134 1.08775 0.85816 0.78466 0.81727 0.78460 1.19220 1.20696 1.20720 0.92695 0.92339 0.92364 0.91344 0.91599 0.77219 0.88357 0.88965 0.92108 0.92295 0.88840 0.92400 0.91446 0.91577 0.78690 0.91576 0.91960 0.90287 0.91584 0.89546 0.88914 0.77421 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.55 37.16 0.32 -1.65 16 2 C 0.07 1.05 2.07 -67.72 -0.14 0.91 16 3 H 0.08 1.67 5.76 -51.93 -0.30 1.38 16 4 C -0.11 -1.38 4.85 -26.65 -0.13 -1.51 16 5 C 0.15 1.98 2.52 -67.81 -0.17 1.81 16 6 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 7 N -0.73 -7.60 5.08 -53.69 -0.27 -7.87 16 8 C 0.51 5.97 7.35 -10.99 -0.08 5.89 16 9 O -0.51 -8.47 12.62 -12.70 -0.16 -8.63 16 10 C -0.17 -1.28 4.95 -27.88 -0.14 -1.42 16 11 C 0.14 1.29 0.98 -90.62 -0.09 1.20 16 12 C -0.15 -1.64 8.52 37.16 0.32 -1.32 16 13 C -0.18 -1.10 8.82 37.16 0.33 -0.77 16 14 O -0.54 -6.04 11.88 -53.48 -0.64 -6.68 16 15 C -0.12 -1.68 5.67 -26.65 -0.15 -1.83 16 16 C 0.04 0.68 4.99 -3.83 -0.02 0.66 16 17 N -0.51 -8.29 4.69 -228.12 -1.07 -9.36 16 18 C 0.04 0.65 5.47 -4.98 -0.03 0.63 16 19 C 0.41 9.27 7.18 -10.99 -0.08 9.20 16 20 O -0.59 -15.16 11.22 5.54 0.06 -15.10 16 21 N -0.56 -13.93 5.29 -10.96 -0.06 -13.98 16 22 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 24 C 0.02 0.62 5.50 -17.46 -0.10 0.52 16 25 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 26 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.89 6.59 -51.93 -0.34 0.54 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.39 2.83 8.60 -40.82 -0.35 2.48 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.32 5.51 -51.93 -0.29 1.03 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.37 2.62 9.05 45.56 0.41 3.04 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.08 1.68 5.61 -51.93 -0.29 1.39 16 48 H 0.07 1.10 8.12 -51.93 -0.42 0.67 16 49 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 50 H 0.09 1.48 6.04 -51.93 -0.31 1.17 16 51 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 52 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 402.02 15.07 6.06 6.06 Total: -1.00 -33.45 402.02 -8.72 -42.17 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -8.04 Total: 17.05 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.30 Total: 3.85 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.68 Total: -54.89 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.73 Total: -30.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.45 -8.72 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724994306.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.827 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds