Wall clock time and date at job start Wed Apr 1 2020 00:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45272 * 2 1 4 4 C 1.53042 * 109.46052 * 119.97138 * 2 1 3 5 5 C 1.53110 * 109.27893 * 179.19868 * 4 2 1 6 6 H 1.09001 * 109.52616 * 62.24894 * 5 4 2 7 7 N 1.46499 * 109.57829 * 182.41236 * 5 4 2 8 8 C 1.34771 * 120.00088 * 204.71812 * 7 5 4 9 9 O 1.21282 * 120.00319 * 359.97438 * 8 7 5 10 10 C 1.50703 * 120.00044 * 179.97438 * 8 7 5 11 11 C 1.52998 * 109.47223 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46746 * 60.00524 * 11 10 8 13 13 C 1.53002 * 109.47294 * 179.97438 * 11 10 8 14 14 O 1.42900 * 109.47383 * 300.00258 * 11 10 8 15 15 C 1.53127 * 109.15827 * 302.34382 * 5 4 2 16 16 C 1.53034 * 109.30942 * 57.63951 * 15 5 4 17 17 N 1.46846 * 109.46475 * 240.02376 * 2 1 3 18 18 C 1.46901 * 110.99607 * 54.14872 * 17 2 1 19 19 C 1.50692 * 109.47651 * 65.47174 * 18 17 2 20 20 O 1.21300 * 119.99728 * 354.37014 * 19 18 17 21 21 N 1.34772 * 120.00162 * 174.36857 * 19 18 17 22 22 C 1.37104 * 119.99894 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99920 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00115 * 179.97438 * 22 21 19 25 25 N 1.31421 * 119.99987 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00478 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46829 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47401 * 119.99974 * 26 24 22 29 29 H 1.48493 * 109.47382 * 240.00679 * 26 24 22 30 30 H 1.09001 * 109.47630 * 293.65657 * 1 2 3 31 31 H 1.09003 * 109.46849 * 53.65497 * 1 2 3 32 32 H 1.08999 * 109.46912 * 173.64771 * 1 2 3 33 33 H 1.08998 * 109.50105 * 59.25520 * 4 2 1 34 34 H 1.09006 * 109.53579 * 299.15732 * 4 2 1 35 35 H 0.97002 * 120.00142 * 24.70641 * 7 5 4 36 36 H 1.08994 * 109.47397 * 299.99703 * 10 8 7 37 37 H 1.09003 * 109.46855 * 59.99868 * 10 8 7 38 38 H 1.08997 * 109.47699 * 59.99775 * 12 11 10 39 39 H 1.09000 * 109.47268 * 180.02562 * 12 11 10 40 40 H 1.09005 * 109.47009 * 299.99288 * 12 11 10 41 41 H 1.09004 * 109.46860 * 59.99936 * 13 11 10 42 42 H 1.08999 * 109.47266 * 179.97438 * 13 11 10 43 43 H 1.08997 * 109.47235 * 300.01000 * 13 11 10 44 44 H 0.96693 * 114.00036 * 299.99452 * 14 11 10 45 45 H 1.09002 * 109.49996 * 177.59532 * 15 5 4 46 46 H 1.08996 * 109.50607 * 297.67433 * 15 5 4 47 47 H 1.09001 * 109.46806 * 60.84903 * 16 15 5 48 48 H 1.09002 * 109.46620 * 180.82487 * 16 15 5 49 49 H 1.09000 * 109.46651 * 185.47775 * 18 17 2 50 50 H 1.08998 * 109.47326 * 305.46963 * 18 17 2 51 51 H 0.97001 * 120.00556 * 0.02562 * 21 19 18 52 52 H 0.96998 * 120.00069 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5708 -0.7360 1.2358 6 1 3.9456 0.2871 1.2674 7 7 4.0654 -1.4747 2.4002 8 6 5.2972 -1.2221 2.8851 9 8 5.9966 -0.3836 2.3572 10 6 5.8057 -1.9817 4.0833 11 6 7.2194 -1.5073 4.4255 12 6 7.1921 -0.0111 4.7442 13 6 7.7354 -2.2779 5.6424 14 8 8.0832 -1.7414 3.3115 15 6 4.0547 -1.4188 -0.0466 16 6 3.4865 -0.6785 -1.2595 17 7 2.0193 -0.6918 -1.1993 18 6 1.4374 -0.1105 -2.4165 19 6 1.9259 1.3056 -2.5802 20 8 2.6013 1.8182 -1.7128 21 7 1.6125 2.0024 -3.6904 22 6 2.0566 3.2910 -3.8391 23 1 2.6578 3.7475 -3.0667 24 6 1.7339 4.0094 -4.9839 25 7 1.0027 3.4538 -5.9239 26 14 2.3395 5.7647 -5.1868 27 1 3.1380 6.1536 -3.9966 28 1 3.1866 5.8587 -6.4028 29 1 1.1759 6.6772 -5.3224 30 1 -0.3634 0.4123 0.9413 31 1 -0.3633 0.6091 -0.8278 32 1 -0.3633 -1.0214 -0.1137 33 1 1.6659 -1.7446 1.2577 34 1 1.6894 -0.1987 2.1404 35 1 3.5061 -2.1455 2.8224 36 1 5.1467 -1.8034 4.9330 37 1 5.8255 -3.0476 3.8562 38 1 6.5333 0.1675 5.5939 39 1 8.1993 0.3270 4.9876 40 1 6.8244 0.5383 3.8775 41 1 7.7547 -3.3440 5.4159 42 1 8.7428 -1.9403 5.8860 43 1 7.0764 -2.0990 6.4920 44 1 8.1489 -2.6709 3.0533 45 1 5.1439 -1.3947 -0.0829 46 1 3.7131 -2.4538 -0.0590 47 1 3.8403 0.3525 -1.2543 48 1 3.8176 -1.1713 -2.1736 49 1 1.7392 -0.7014 -3.2813 50 1 0.3504 -0.1129 -2.3364 51 1 1.0722 1.5927 -4.3840 52 1 0.7778 3.9551 -6.7233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724994306.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:08 Heat of formation + Delta-G solvation = -153.742742 kcal Electronic energy + Delta-G solvation = -31227.981842 eV Core-core repulsion = 27032.926887 eV Total energy + Delta-G solvation = -4195.054955 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.50257 -40.83958 -39.22561 -38.27993 -36.27752 -35.65854 -33.70660 -33.38658 -33.31772 -32.71379 -29.63184 -28.24531 -28.16830 -27.86715 -26.21946 -24.00989 -22.92949 -21.62342 -21.38306 -21.05112 -20.60922 -19.74365 -18.38739 -17.73404 -17.44557 -16.96223 -16.72514 -16.47145 -16.45703 -16.25103 -15.93459 -15.66692 -15.57381 -15.23263 -15.07707 -14.68176 -14.47811 -14.28269 -13.79593 -13.56447 -13.29626 -13.11124 -13.10620 -13.05024 -12.96552 -12.93947 -12.75534 -12.69213 -12.58070 -12.46214 -12.43741 -12.17802 -12.04670 -11.82577 -11.73149 -11.64561 -11.43100 -11.30767 -11.04280 -10.97018 -10.45665 -10.01125 -9.95135 -9.01700 -8.49215 -5.98962 1.30945 1.36689 1.50406 1.78116 1.99730 2.21984 2.26024 2.95844 3.16307 3.25786 3.41734 3.67482 3.75157 3.85311 3.90170 4.05089 4.09063 4.18654 4.26515 4.38603 4.43885 4.50944 4.56944 4.57740 4.62369 4.62981 4.64849 4.74937 4.76961 4.85797 4.91173 4.93343 5.00140 5.03373 5.06305 5.10398 5.11663 5.24982 5.27506 5.30879 5.36319 5.43459 5.52514 5.64616 5.89850 6.05734 6.15646 6.56326 6.70491 6.99844 7.09341 7.46012 7.52755 8.08736 8.66216 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.002375 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.772143 B =11786.135676 C =12867.671357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.062 3.938 3 H 0.032 0.968 4 C -0.098 4.098 5 C 0.152 3.848 6 H 0.037 0.963 7 N -0.713 5.713 8 C 0.501 3.499 9 O -0.569 6.569 10 C -0.159 4.159 11 C 0.137 3.863 12 C -0.157 4.157 13 C -0.169 4.169 14 O -0.575 6.575 15 C -0.104 4.104 16 C 0.041 3.959 17 N -0.489 5.489 18 C 0.045 3.955 19 C 0.407 3.593 20 O -0.622 6.622 21 N -0.570 5.570 22 C -0.332 4.332 23 H 0.073 0.927 24 C -0.012 4.012 25 N -0.917 5.917 26 Si 0.989 3.011 27 H -0.278 1.278 28 H -0.270 1.270 29 H -0.268 1.268 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.417 0.583 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.382 0.618 45 H 0.047 0.953 46 H 0.091 0.909 47 H 0.028 0.972 48 H 0.070 0.930 49 H 0.106 0.894 50 H 0.117 0.883 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -19.073 21.281 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.047 4.047 3 H 0.050 0.950 4 C -0.136 4.136 5 C 0.047 3.953 6 H 0.055 0.945 7 N -0.366 5.366 8 C 0.289 3.711 9 O -0.447 6.447 10 C -0.198 4.198 11 C 0.097 3.903 12 C -0.214 4.214 13 C -0.226 4.226 14 O -0.382 6.382 15 C -0.142 4.142 16 C -0.087 4.087 17 N -0.212 5.212 18 C -0.087 4.087 19 C 0.195 3.805 20 O -0.510 6.510 21 N -0.207 5.207 22 C -0.461 4.461 23 H 0.091 0.909 24 C -0.212 4.212 25 N -0.558 5.558 26 Si 0.813 3.187 27 H -0.203 1.203 28 H -0.195 1.195 29 H -0.193 1.193 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.254 0.746 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.230 0.770 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.046 0.954 48 H 0.088 0.912 49 H 0.124 0.876 50 H 0.135 0.865 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.941 -17.922 21.388 28.059 hybrid contribution 0.211 1.326 -1.067 1.715 sum 3.152 -16.597 20.321 26.426 Atomic orbital electron populations 1.21822 0.92851 1.03001 1.01798 1.21789 0.96402 0.96528 0.90004 0.94953 1.21755 0.92105 1.02939 0.96791 1.20697 0.94838 0.94497 0.85284 0.94459 1.45961 1.16932 1.42225 1.31502 1.21332 0.81047 0.83003 0.85758 1.90735 1.57038 1.35529 1.61433 1.22509 0.98576 1.02172 0.96566 1.21040 0.87404 0.95563 0.86336 1.22014 1.02035 0.95267 1.02090 1.22425 1.02036 1.00825 0.97342 1.86711 1.68200 1.32052 1.51216 1.21740 0.98963 1.00438 0.93104 1.22168 0.88295 0.99572 0.98700 1.62618 1.06708 1.50815 1.01075 1.22224 1.02074 0.89038 0.95328 1.22222 0.84685 0.90786 0.82855 1.90446 1.44441 1.72808 1.43330 1.42125 1.47119 1.12898 1.18584 1.19623 1.31597 0.90436 1.04490 0.90902 1.25997 0.96690 1.03797 0.94690 1.69670 1.37664 1.39406 1.09027 0.84933 0.78276 0.77405 0.78090 1.20317 1.19538 1.19283 0.90984 0.94389 0.89775 0.88034 0.90085 0.74586 0.85314 0.85474 0.89883 0.93173 0.92904 0.90310 0.92495 0.89830 0.76997 0.93457 0.89087 0.95375 0.91188 0.87574 0.86473 0.76985 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.55 71.98 0.62 -2.85 16 2 C 0.06 1.90 2.07 44.94 0.09 1.99 16 3 H 0.03 1.36 5.76 -2.39 -0.01 1.35 16 4 C -0.10 -2.22 4.85 30.64 0.15 -2.08 16 5 C 0.15 4.13 2.52 45.07 0.11 4.25 16 6 H 0.04 1.41 7.58 -2.39 -0.02 1.39 16 7 N -0.71 -13.50 5.08 -442.16 -2.25 -15.75 16 8 C 0.50 11.37 7.35 87.66 0.64 12.01 16 9 O -0.57 -19.97 12.62 14.42 0.18 -19.79 16 10 C -0.16 -1.88 4.95 29.85 0.15 -1.74 16 11 C 0.14 2.26 0.98 -10.79 -0.01 2.24 16 12 C -0.16 -3.40 8.52 71.98 0.61 -2.79 16 13 C -0.17 -1.57 8.82 71.98 0.63 -0.94 16 14 O -0.57 -12.77 11.88 -131.53 -1.56 -14.34 16 15 C -0.10 -2.97 5.67 30.65 0.17 -2.80 16 16 C 0.04 1.46 4.99 86.32 0.43 1.89 16 17 N -0.49 -15.57 4.69 -875.65 -4.11 -19.67 16 18 C 0.05 1.56 5.47 85.55 0.47 2.03 16 19 C 0.41 19.38 7.18 87.66 0.63 20.01 16 20 O -0.62 -34.19 11.22 -3.09 -0.03 -34.22 16 21 N -0.57 -29.66 5.29 -306.99 -1.62 -31.28 16 22 C -0.33 -19.25 9.68 84.04 0.81 -18.44 16 23 H 0.07 4.58 7.16 -2.91 -0.02 4.56 16 24 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 25 N -0.92 -50.09 13.05 21.66 0.28 -49.81 16 26 Si 0.99 44.26 29.55 68.60 2.03 46.29 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.04 1.10 6.59 -2.39 -0.02 1.09 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.42 4.25 8.60 -92.71 -0.80 3.45 16 36 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 1.61 5.51 -2.38 -0.01 1.60 16 41 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 43 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.38 5.10 9.05 -74.06 -0.67 4.43 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.03 1.29 5.61 -2.39 -0.01 1.28 16 48 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 49 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 50 H 0.12 3.56 6.04 -2.39 -0.01 3.55 16 51 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 52 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -81.06 402.02 -2.35 -83.41 By element: Atomic # 1 Polarization: 43.77 SS G_CDS: -1.25 Total: 42.52 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.98 Total: 12.63 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -7.70 Total: -116.51 kcal Atomic # 8 Polarization: -66.93 SS G_CDS: -1.42 Total: -68.35 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -81.06 -2.35 -83.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724994306.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.332 kcal (2) G-P(sol) polarization free energy of solvation -81.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds