Wall clock time and date at job start Wed Apr 1 2020 00:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00283 * 2 1 4 4 C 1.53004 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46781 * 59.99940 * 4 3 2 6 6 C 1.52996 * 109.47068 * 299.99604 * 4 3 2 7 7 C 1.50704 * 109.46793 * 179.97438 * 4 3 2 8 8 O 1.21283 * 120.00181 * 359.97438 * 7 4 3 9 9 N 1.34779 * 119.99377 * 179.97438 * 7 4 3 10 10 C 1.46496 * 119.99526 * 179.97438 * 9 7 4 11 11 H 1.08999 * 112.91101 * 23.75317 * 10 9 7 12 12 C 1.53784 * 113.61412 * 154.99998 * 10 9 7 13 13 C 1.53783 * 87.07796 * 89.11594 * 12 10 9 14 14 H 1.08993 * 113.61810 * 270.79779 * 13 12 10 15 15 C 1.53004 * 113.61120 * 139.98100 * 13 12 10 16 16 N 1.46901 * 109.46916 * 174.99985 * 15 13 12 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 15 19 19 O 1.21297 * 120.00124 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.07990 * 119.99768 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99812 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99864 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99403 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47056 * 90.00522 * 25 23 21 27 27 H 1.48505 * 109.46897 * 209.99554 * 25 23 21 28 28 H 1.48495 * 109.47527 * 330.00091 * 25 23 21 29 29 C 1.53777 * 87.08059 * 25.43639 * 13 12 10 30 30 H 1.09005 * 109.47456 * 300.00656 * 1 2 3 31 31 H 1.09003 * 109.47369 * 59.99903 * 1 2 3 32 32 H 1.08993 * 109.47653 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47542 * 59.99541 * 3 2 1 34 34 H 1.09002 * 109.47085 * 299.99936 * 3 2 1 35 35 H 1.09002 * 109.46829 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.47439 * 299.99424 * 5 4 3 37 37 H 1.08997 * 109.47271 * 60.00628 * 5 4 3 38 38 H 1.09003 * 109.47386 * 300.00756 * 6 4 3 39 39 H 1.09003 * 109.46837 * 60.00253 * 6 4 3 40 40 H 1.08992 * 109.47459 * 179.97438 * 6 4 3 41 41 H 0.97000 * 119.99972 * 0.02562 * 9 7 4 42 42 H 1.09004 * 113.61406 * 334.57395 * 12 10 9 43 43 H 1.09001 * 113.69222 * 203.67870 * 12 10 9 44 44 H 1.09004 * 109.46889 * 55.00365 * 15 13 12 45 45 H 1.08995 * 109.47384 * 295.00006 * 15 13 12 46 46 H 1.00901 * 111.00067 * 303.95263 * 16 15 13 47 47 H 1.09001 * 109.46798 * 300.00327 * 17 16 15 48 48 H 1.08998 * 109.46961 * 60.00043 * 17 16 15 49 49 H 0.97009 * 119.99629 * 359.97438 * 20 18 17 50 50 H 0.97004 * 119.99642 * 179.97438 * 24 23 21 51 51 H 1.08998 * 113.61792 * 89.11341 * 29 13 12 52 52 H 1.09000 * 113.61196 * 220.01547 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9873 0.4251 -1.2482 6 6 3.9864 0.4256 1.2502 7 6 4.1484 2.5613 0.0000 8 8 3.4356 3.5425 -0.0013 9 7 5.4888 2.7021 0.0009 10 6 6.0847 4.0404 -0.0002 11 1 5.4174 4.8023 0.4027 12 6 7.5014 4.0845 0.5964 13 6 8.0222 3.7932 -0.8209 14 1 8.1100 2.7300 -1.0440 15 6 9.2812 4.5826 -1.1855 16 7 9.7664 4.1495 -2.5027 17 6 10.9775 4.8873 -2.8863 18 6 11.4443 4.4175 -4.2399 19 8 10.8284 3.5534 -4.8276 20 7 12.5460 4.9575 -4.7976 21 6 12.9704 4.5304 -6.0293 22 1 12.4221 3.7611 -6.5525 23 6 14.1067 5.0868 -6.6040 24 7 14.7741 6.0226 -5.9670 25 14 14.6852 4.5044 -8.2819 26 1 14.0487 5.3305 -9.3392 27 1 16.1615 4.6388 -8.3705 28 1 14.3055 3.0812 -8.4700 29 6 6.7235 4.4292 -1.3439 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 5.0740 0.3394 -1.2480 36 1 3.5440 -0.5707 -1.2482 37 1 3.6662 0.9659 -2.1384 38 1 3.6643 0.9667 2.1400 39 1 3.5430 -0.5702 1.2502 40 1 5.0729 0.3391 1.2505 41 1 6.0589 1.9173 0.0016 42 1 7.7006 3.2832 1.3080 43 1 7.7875 5.0664 0.9735 44 1 10.0526 4.4022 -0.4368 45 1 9.0467 5.6466 -1.2165 46 1 9.9297 3.1540 -2.5185 47 1 10.7551 5.9536 -2.9288 48 1 11.7604 4.7087 -2.1493 49 1 13.0383 5.6488 -4.3277 50 1 15.5675 6.4107 -6.3681 51 1 6.7957 5.5059 -1.4978 52 1 6.2947 3.9062 -2.1988 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725359323.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:52 Heat of formation + Delta-G solvation = -109.010873 kcal Electronic energy + Delta-G solvation = -29332.006700 eV Core-core repulsion = 25138.891464 eV Total energy + Delta-G solvation = -4193.115236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.88423 -39.29911 -38.24923 -37.95331 -35.28322 -35.20826 -33.85694 -33.03697 -31.21199 -28.58444 -27.77144 -27.73058 -25.99161 -25.89788 -25.64661 -24.03285 -23.07894 -21.95450 -19.87867 -19.64069 -19.05595 -17.86622 -17.48816 -16.58460 -16.28354 -16.25051 -15.97486 -15.67629 -15.38491 -15.30250 -14.78539 -14.70003 -14.36405 -14.04561 -13.99172 -13.74776 -13.66151 -13.53452 -13.18978 -12.74878 -12.66845 -12.53946 -12.49646 -12.24597 -12.22895 -11.89819 -11.75712 -11.54949 -11.49531 -11.45942 -11.13394 -11.03948 -10.97666 -10.60125 -10.39140 -10.33838 -10.20822 -10.05231 -9.97525 -9.50361 -9.27204 -8.43911 -8.02459 -7.94731 -6.41324 -3.82076 2.30824 2.64803 3.18273 3.26763 3.32609 3.50304 3.91825 4.05862 4.16285 4.24881 4.30161 4.38966 4.45445 4.57468 4.70140 4.74429 4.86585 4.93455 4.95560 5.17697 5.18666 5.20024 5.26293 5.26785 5.27035 5.33510 5.38678 5.42598 5.45886 5.51597 5.52913 5.54129 5.59439 5.69950 5.80834 5.82845 5.87322 5.98770 5.99957 6.02708 6.07335 6.27760 6.42167 6.72061 7.17851 7.24601 7.55615 7.68648 7.89949 8.07089 8.62037 9.18476 9.55104 10.06714 10.76457 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020104 B = 0.001587 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.417237 B =17642.917022 C =18555.286328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.085 3.915 4 C -0.080 4.080 5 C -0.138 4.138 6 C -0.136 4.136 7 C 0.530 3.470 8 O -0.541 6.541 9 N -0.705 5.705 10 C 0.115 3.885 11 H 0.101 0.899 12 C -0.140 4.140 13 C -0.105 4.105 14 H 0.089 0.911 15 C 0.069 3.931 16 N -0.667 5.667 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.134 4.134 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.402 0.598 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.027 0.973 45 H 0.072 0.928 46 H 0.347 0.653 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.091 0.909 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.422 -8.249 18.696 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.008 3.992 4 C -0.083 4.083 5 C -0.196 4.196 6 C -0.194 4.194 7 C 0.316 3.684 8 O -0.417 6.417 9 N -0.356 5.356 10 C 0.009 3.991 11 H 0.119 0.881 12 C -0.179 4.179 13 C -0.123 4.123 14 H 0.108 0.892 15 C -0.061 4.061 16 N -0.299 5.299 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.173 4.173 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.237 0.763 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.166 0.834 47 H 0.103 0.897 48 H 0.060 0.940 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.110 0.890 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.475 -7.763 17.887 29.755 hybrid contribution 1.523 -0.215 -0.018 1.538 sum -20.952 -7.979 17.869 28.670 Atomic orbital electron populations 1.22732 0.80723 1.02726 1.00172 1.87792 1.19794 1.27669 1.95515 1.22213 0.91080 0.84272 1.01607 1.20716 0.95203 0.93167 0.99253 1.21816 1.01425 1.01139 0.95188 1.21801 1.01267 1.01178 0.95147 1.20328 0.82322 0.90623 0.75157 1.90707 1.60988 1.40591 1.49428 1.45613 1.06421 1.08702 1.74872 1.21924 0.94197 0.84827 0.98113 0.88079 1.23360 0.94600 1.03098 0.96834 1.22558 0.94619 1.00145 0.95010 0.89249 1.21970 0.94992 0.99586 0.89547 1.60067 1.32547 1.10237 1.27084 1.21670 0.91196 0.99372 0.95987 1.19832 0.83314 0.86279 0.87953 1.90520 1.57262 1.34458 1.64520 1.41869 1.23740 1.36143 1.18342 1.19711 1.08781 1.20265 0.94183 0.87933 1.25258 0.96390 0.96320 0.99960 1.69614 1.18943 1.26767 1.39018 0.85855 0.77548 0.79262 0.81599 1.20390 1.20945 1.19446 1.23369 0.95315 1.01695 0.96878 0.94054 0.93966 0.89522 0.92499 0.92357 0.91946 0.90341 0.92006 0.92240 0.90348 0.92083 0.76322 0.91024 0.88580 0.95537 0.90960 0.83358 0.89692 0.94005 0.77473 0.91893 0.89025 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.25 9.35 -35.23 -0.33 -3.58 16 3 C 0.09 0.75 4.09 37.16 0.15 0.90 16 4 C -0.08 -0.64 0.70 -155.66 -0.11 -0.75 16 5 C -0.14 -1.02 8.22 37.15 0.31 -0.71 16 6 C -0.14 -0.87 8.23 37.16 0.31 -0.56 16 7 C 0.53 5.35 6.48 -10.98 -0.07 5.27 16 8 O -0.54 -7.42 15.58 5.55 0.09 -7.33 16 9 N -0.71 -5.85 5.05 -53.02 -0.27 -6.12 16 10 C 0.11 1.03 4.32 -67.12 -0.29 0.74 16 11 H 0.10 1.03 7.47 -51.93 -0.39 0.64 16 12 C -0.14 -1.04 7.39 -25.92 -0.19 -1.23 16 13 C -0.10 -0.99 3.78 -89.81 -0.34 -1.33 16 14 H 0.09 0.84 8.13 -51.93 -0.42 0.42 16 15 C 0.07 0.79 5.52 -3.82 -0.02 0.77 16 16 N -0.67 -10.54 6.13 -115.05 -0.70 -11.25 16 17 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 18 C 0.44 10.46 7.82 -10.99 -0.09 10.38 16 19 O -0.58 -15.94 15.78 5.54 0.09 -15.85 16 20 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 25 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 C -0.13 -1.38 7.43 -25.92 -0.19 -1.57 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.06 0.56 8.10 -51.93 -0.42 0.13 16 35 H 0.06 0.39 7.56 -51.93 -0.39 0.00 16 36 H 0.08 0.56 7.68 -51.93 -0.40 0.16 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.50 7.68 -51.93 -0.40 0.10 16 40 H 0.06 0.30 7.56 -51.93 -0.39 -0.09 16 41 H 0.40 2.53 7.54 -40.82 -0.31 2.22 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 46 H 0.35 5.64 8.43 -39.29 -0.33 5.31 16 47 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 50 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.09 0.95 7.90 -51.93 -0.41 0.54 16 52 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 424.32 15.07 6.39 6.39 Total: -1.00 -33.56 424.32 -7.96 -41.52 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -9.17 Total: 12.42 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 0.30 Total: 6.00 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.31 Total: -55.67 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.16 Total: -26.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.56 -7.96 -41.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725359323.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.492 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds