Wall clock time and date at job start Wed Apr 1 2020 00:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00283 * 2 1 4 4 C 1.53004 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46781 * 59.99940 * 4 3 2 6 6 C 1.52996 * 109.47068 * 299.99604 * 4 3 2 7 7 C 1.50704 * 109.46793 * 179.97438 * 4 3 2 8 8 O 1.21283 * 120.00181 * 359.97438 * 7 4 3 9 9 N 1.34779 * 119.99377 * 179.97438 * 7 4 3 10 10 C 1.46496 * 119.99526 * 179.97438 * 9 7 4 11 11 H 1.08999 * 112.91101 * 23.75317 * 10 9 7 12 12 C 1.53784 * 113.61412 * 154.99998 * 10 9 7 13 13 C 1.53783 * 87.07796 * 89.11594 * 12 10 9 14 14 H 1.08993 * 113.61810 * 270.79779 * 13 12 10 15 15 C 1.53004 * 113.61120 * 139.98100 * 13 12 10 16 16 N 1.46901 * 109.46916 * 174.99985 * 15 13 12 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 15 19 19 O 1.21297 * 120.00124 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.07990 * 119.99768 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99812 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99864 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99403 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47056 * 90.00522 * 25 23 21 27 27 H 1.48505 * 109.46897 * 209.99554 * 25 23 21 28 28 H 1.48495 * 109.47527 * 330.00091 * 25 23 21 29 29 C 1.53777 * 87.08059 * 25.43639 * 13 12 10 30 30 H 1.09005 * 109.47456 * 300.00656 * 1 2 3 31 31 H 1.09003 * 109.47369 * 59.99903 * 1 2 3 32 32 H 1.08993 * 109.47653 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47542 * 59.99541 * 3 2 1 34 34 H 1.09002 * 109.47085 * 299.99936 * 3 2 1 35 35 H 1.09002 * 109.46829 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.47439 * 299.99424 * 5 4 3 37 37 H 1.08997 * 109.47271 * 60.00628 * 5 4 3 38 38 H 1.09003 * 109.47386 * 300.00756 * 6 4 3 39 39 H 1.09003 * 109.46837 * 60.00253 * 6 4 3 40 40 H 1.08992 * 109.47459 * 179.97438 * 6 4 3 41 41 H 0.97000 * 119.99972 * 0.02562 * 9 7 4 42 42 H 1.09004 * 113.61406 * 334.57395 * 12 10 9 43 43 H 1.09001 * 113.69222 * 203.67870 * 12 10 9 44 44 H 1.09004 * 109.46889 * 55.00365 * 15 13 12 45 45 H 1.08995 * 109.47384 * 295.00006 * 15 13 12 46 46 H 1.00901 * 111.00067 * 303.95263 * 16 15 13 47 47 H 1.09001 * 109.46798 * 300.00327 * 17 16 15 48 48 H 1.08998 * 109.46961 * 60.00043 * 17 16 15 49 49 H 0.97009 * 119.99629 * 359.97438 * 20 18 17 50 50 H 0.97004 * 119.99642 * 179.97438 * 24 23 21 51 51 H 1.08998 * 113.61792 * 89.11341 * 29 13 12 52 52 H 1.09000 * 113.61196 * 220.01547 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9873 0.4251 -1.2482 6 6 3.9864 0.4256 1.2502 7 6 4.1484 2.5613 0.0000 8 8 3.4356 3.5425 -0.0013 9 7 5.4888 2.7021 0.0009 10 6 6.0847 4.0404 -0.0002 11 1 5.4174 4.8023 0.4027 12 6 7.5014 4.0845 0.5964 13 6 8.0222 3.7932 -0.8209 14 1 8.1100 2.7300 -1.0440 15 6 9.2812 4.5826 -1.1855 16 7 9.7664 4.1495 -2.5027 17 6 10.9775 4.8873 -2.8863 18 6 11.4443 4.4175 -4.2399 19 8 10.8284 3.5534 -4.8276 20 7 12.5460 4.9575 -4.7976 21 6 12.9704 4.5304 -6.0293 22 1 12.4221 3.7611 -6.5525 23 6 14.1067 5.0868 -6.6040 24 7 14.7741 6.0226 -5.9670 25 14 14.6852 4.5044 -8.2819 26 1 14.0487 5.3305 -9.3392 27 1 16.1615 4.6388 -8.3705 28 1 14.3055 3.0812 -8.4700 29 6 6.7235 4.4292 -1.3439 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 5.0740 0.3394 -1.2480 36 1 3.5440 -0.5707 -1.2482 37 1 3.6662 0.9659 -2.1384 38 1 3.6643 0.9667 2.1400 39 1 3.5430 -0.5702 1.2502 40 1 5.0729 0.3391 1.2505 41 1 6.0589 1.9173 0.0016 42 1 7.7006 3.2832 1.3080 43 1 7.7875 5.0664 0.9735 44 1 10.0526 4.4022 -0.4368 45 1 9.0467 5.6466 -1.2165 46 1 9.9297 3.1540 -2.5185 47 1 10.7551 5.9536 -2.9288 48 1 11.7604 4.7087 -2.1493 49 1 13.0383 5.6488 -4.3277 50 1 15.5675 6.4107 -6.3681 51 1 6.7957 5.5059 -1.4978 52 1 6.2947 3.9062 -2.1988 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725359323.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:51 Heat of formation + Delta-G solvation = -134.496191 kcal Electronic energy + Delta-G solvation = -29333.111826 eV Core-core repulsion = 25138.891464 eV Total energy + Delta-G solvation = -4194.220362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.65156 -40.25348 -39.86408 -38.71188 -36.54691 -35.95947 -35.75295 -33.91066 -33.24696 -29.79804 -28.36034 -28.28503 -27.28767 -26.58275 -26.55444 -25.45843 -24.01482 -22.82774 -21.15298 -20.58286 -20.23081 -19.83537 -18.17948 -17.82506 -17.28575 -16.97707 -16.91987 -16.73493 -16.50460 -16.20535 -16.12271 -15.89711 -15.52776 -15.35053 -15.15593 -14.89057 -14.51754 -14.26759 -14.18873 -14.07229 -13.51218 -13.44730 -13.31776 -13.26453 -13.10284 -13.03836 -12.88064 -12.79744 -12.56617 -12.42096 -12.41112 -12.12181 -12.07758 -11.80235 -11.74620 -11.50821 -11.39592 -11.13461 -10.79074 -10.67748 -10.32972 -10.04453 -10.01343 -9.23841 -8.46695 -5.95487 1.38168 1.41958 1.51731 1.54641 1.95591 2.05855 2.29448 2.89598 2.94647 3.20769 3.48589 3.50041 3.59736 3.74523 3.83252 3.84892 3.92869 4.04614 4.12116 4.33068 4.41389 4.46108 4.47353 4.55193 4.56347 4.59144 4.59487 4.66869 4.73760 4.76686 4.80170 4.85675 4.87370 4.88401 4.88923 4.93404 4.96214 5.15096 5.23208 5.27972 5.29277 5.30720 5.40930 5.66806 5.91557 6.12070 6.14523 6.47182 6.48131 6.60511 7.12775 7.16094 7.56656 8.12115 8.70674 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020104 B = 0.001587 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.417237 B =17642.917022 C =18555.286328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.088 3.912 4 C -0.077 4.077 5 C -0.135 4.135 6 C -0.132 4.132 7 C 0.527 3.473 8 O -0.583 6.583 9 N -0.694 5.694 10 C 0.115 3.885 11 H 0.088 0.912 12 C -0.119 4.119 13 C -0.100 4.100 14 H 0.092 0.908 15 C 0.070 3.930 16 N -0.684 5.684 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.273 1.273 29 C -0.141 4.141 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.414 0.586 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.343 0.657 47 H 0.101 0.899 48 H 0.067 0.933 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.088 0.912 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.654 -8.796 20.059 30.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.011 3.989 4 C -0.080 4.080 5 C -0.192 4.192 6 C -0.189 4.189 7 C 0.314 3.686 8 O -0.462 6.462 9 N -0.345 5.345 10 C 0.009 3.991 11 H 0.106 0.894 12 C -0.157 4.157 13 C -0.119 4.119 14 H 0.110 0.890 15 C -0.058 4.058 16 N -0.316 5.316 17 C -0.067 4.067 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.211 5.211 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.179 4.179 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.251 0.749 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.162 0.838 47 H 0.119 0.881 48 H 0.085 0.915 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.107 0.893 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.685 -8.309 19.283 30.185 hybrid contribution 1.210 -0.038 -0.437 1.287 sum -20.475 -8.347 18.846 29.053 Atomic orbital electron populations 1.22925 0.79537 1.04011 1.00570 1.87771 1.21162 1.27191 1.95527 1.22124 0.91824 0.84425 1.00558 1.20707 0.94582 0.92174 1.00536 1.21801 1.02325 1.00908 0.94186 1.21788 1.02452 1.00789 0.93858 1.20717 0.82616 0.90922 0.74296 1.90687 1.61995 1.42046 1.51507 1.45544 1.06066 1.09084 1.73805 1.21874 0.94927 0.84802 0.97455 0.89369 1.23271 0.92177 1.04509 0.95765 1.22529 0.93049 0.99900 0.96418 0.88974 1.22068 0.95986 1.00014 0.87774 1.60078 1.31618 1.09875 1.30035 1.21524 0.92658 1.00061 0.92480 1.20948 0.82003 0.84962 0.89676 1.90487 1.58205 1.36130 1.66238 1.41941 1.24565 1.36592 1.17978 1.19678 1.09947 1.21113 0.95818 0.90374 1.26030 0.95844 0.96074 1.03224 1.69671 1.19142 1.26986 1.40267 0.84930 0.77634 0.78502 0.77273 1.19758 1.19439 1.19770 1.23396 0.96383 1.01407 0.96752 0.93429 0.93843 0.87805 0.93163 0.93877 0.90534 0.89907 0.93418 0.92506 0.90075 0.90240 0.74875 0.89073 0.87345 0.93765 0.90569 0.83844 0.88120 0.91539 0.76970 0.91293 0.89334 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.48 9.35 -148.98 -1.39 -7.87 16 3 C 0.09 1.57 4.09 71.98 0.29 1.87 16 4 C -0.08 -1.19 0.70 -52.93 -0.04 -1.23 16 5 C -0.13 -1.89 8.22 71.98 0.59 -1.29 16 6 C -0.13 -1.45 8.23 71.98 0.59 -0.86 16 7 C 0.53 10.55 6.48 87.66 0.57 11.12 16 8 O -0.58 -16.47 15.58 -3.04 -0.05 -16.52 16 9 N -0.69 -10.70 5.05 -440.04 -2.22 -12.92 16 10 C 0.11 1.93 4.32 45.52 0.20 2.12 16 11 H 0.09 1.77 7.47 -2.39 -0.02 1.75 16 12 C -0.12 -1.41 7.39 31.12 0.23 -1.18 16 13 C -0.10 -1.69 3.78 -10.27 -0.04 -1.72 16 14 H 0.09 1.53 8.13 -2.39 -0.02 1.51 16 15 C 0.07 1.44 5.52 86.30 0.48 1.91 16 16 N -0.68 -20.63 6.13 -517.92 -3.17 -23.80 16 17 C 0.07 2.19 6.17 85.55 0.53 2.72 16 18 C 0.44 20.80 7.82 87.66 0.69 21.48 16 19 O -0.62 -34.75 15.78 -3.08 -0.05 -34.80 16 20 N -0.57 -29.52 5.29 -306.99 -1.62 -31.15 16 21 C -0.34 -19.20 9.68 84.04 0.81 -18.39 16 22 H 0.08 4.76 7.16 -2.92 -0.02 4.74 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 25 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 29 C -0.14 -2.82 7.43 31.12 0.23 -2.58 16 30 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 34 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 35 H 0.08 0.83 7.56 -2.39 -0.02 0.81 16 36 H 0.08 1.10 7.68 -2.39 -0.02 1.08 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.89 7.68 -2.39 -0.02 0.87 16 40 H 0.08 0.58 7.56 -2.39 -0.02 0.56 16 41 H 0.41 4.32 7.54 -92.71 -0.70 3.62 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.11 1.10 8.10 -2.39 -0.02 1.08 16 44 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 1.53 7.84 -2.39 -0.02 1.51 16 46 H 0.34 10.80 8.43 -89.69 -0.76 10.04 16 47 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 48 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.40 19.31 7.90 -92.70 -0.73 18.58 16 50 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 51 H 0.09 1.81 7.90 -2.39 -0.02 1.79 16 52 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -73.85 424.32 -0.61 -74.45 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: -1.26 Total: 41.58 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 6.85 Total: 15.32 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -6.73 Total: -117.18 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -1.49 Total: -59.19 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -73.85 -0.61 -74.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725359323.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.044 kcal (2) G-P(sol) polarization free energy of solvation -73.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds