Wall clock time and date at job start Wed Apr 1 2020 01:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.45227 * 2 1 4 4 C 1.53046 * 109.46258 * 240.03079 * 2 1 3 5 5 H 1.09003 * 109.53089 * 300.76136 * 4 2 1 6 6 N 1.46491 * 109.50443 * 60.85991 * 4 2 1 7 7 C 1.34776 * 120.00341 * 204.80755 * 6 4 2 8 8 O 1.21286 * 119.99851 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00511 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47216 * 186.08423 * 9 7 6 11 11 C 1.52998 * 109.46897 * 60.34006 * 10 9 7 12 12 C 1.53007 * 109.46894 * 180.33494 * 10 9 7 13 13 O 1.42893 * 109.47433 * 300.33475 * 10 9 7 14 14 C 1.53117 * 109.27705 * 180.80578 * 4 2 1 15 15 C 1.53113 * 109.16524 * 57.64984 * 14 4 2 16 16 C 1.53035 * 109.27977 * 302.34721 * 15 14 4 17 17 N 1.46844 * 109.46523 * 119.97877 * 2 1 3 18 18 C 1.46905 * 110.99641 * 305.85197 * 17 2 1 19 19 C 1.50702 * 109.47200 * 301.84020 * 18 17 2 20 20 O 1.21293 * 119.99889 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99805 * 180.02562 * 19 18 17 22 22 C 1.37094 * 119.99870 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00337 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99929 * 179.97438 * 22 21 19 25 25 N 1.31404 * 120.00064 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99784 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47126 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47115 * 120.00361 * 26 24 22 29 29 H 1.48507 * 109.46797 * 240.00112 * 26 24 22 30 30 H 1.08998 * 109.46783 * 300.02186 * 1 2 3 31 31 H 1.08999 * 109.47135 * 60.02899 * 1 2 3 32 32 H 1.09003 * 109.46914 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00503 * 24.80380 * 6 4 2 34 34 H 1.08997 * 109.47293 * 306.08692 * 9 7 6 35 35 H 1.09005 * 109.46794 * 66.08527 * 9 7 6 36 36 H 1.08996 * 109.47549 * 59.99297 * 11 10 9 37 37 H 1.09000 * 109.47385 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.46784 * 299.99320 * 11 10 9 39 39 H 1.09001 * 109.47201 * 62.80902 * 12 10 9 40 40 H 1.09003 * 109.46758 * 182.80617 * 12 10 9 41 41 H 1.08995 * 109.47003 * 302.80708 * 12 10 9 42 42 H 0.96697 * 114.00042 * 60.00173 * 13 10 9 43 43 H 1.09003 * 109.52304 * 297.74144 * 14 4 2 44 44 H 1.09000 * 109.52051 * 177.55929 * 14 4 2 45 45 H 1.08996 * 109.50530 * 182.40365 * 15 14 4 46 46 H 1.09001 * 109.53302 * 62.30937 * 15 14 4 47 47 H 1.08999 * 109.46490 * 299.16048 * 16 15 14 48 48 H 1.09004 * 109.46262 * 179.19132 * 16 15 14 49 49 H 1.09000 * 109.46812 * 61.83729 * 18 17 2 50 50 H 1.08999 * 109.46855 * 181.83585 * 18 17 2 51 51 H 0.97002 * 119.99994 * 359.97438 * 21 19 18 52 52 H 0.97006 * 120.00003 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 1 1.6660 -1.7447 -1.2584 6 7 1.5689 -0.0183 -2.4461 7 6 1.4441 -0.6822 -3.6124 8 8 1.7222 -1.8612 -3.6717 9 6 0.9601 0.0406 -4.8429 10 6 0.7646 -0.9636 -5.9805 11 6 -0.2764 -2.0059 -5.5673 12 6 0.2812 -0.2285 -7.2323 13 8 2.0057 -1.6146 -6.2598 14 6 3.5710 -0.7360 -1.2357 15 6 4.0549 -1.4187 0.0466 16 6 3.4866 -0.6777 1.2590 17 7 2.0193 -0.6918 1.1993 18 6 1.4374 -0.1106 2.4165 19 6 1.7793 1.3554 2.4863 20 8 2.4429 1.8658 1.6086 21 7 1.3485 2.0991 3.5244 22 6 1.6600 3.4327 3.5881 23 1 2.2508 3.8872 2.8067 24 6 1.2154 4.1996 4.6582 25 7 0.4969 3.6466 5.6093 26 14 1.6392 6.0169 4.7447 27 1 2.4527 6.3924 3.5603 28 1 0.3882 6.8167 4.7604 29 1 2.4144 6.2860 5.9825 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.3468 0.9248 -2.3988 34 1 0.0122 0.5329 -4.6259 35 1 1.6974 0.7867 -5.1396 36 1 -1.2230 -1.5094 -5.3542 37 1 -0.4160 -2.7212 -6.3779 38 1 0.0680 -2.5297 -4.6755 39 1 1.0446 0.4792 -7.5556 40 1 0.0943 -0.9499 -8.0278 41 1 -0.6395 0.3088 -7.0052 42 1 2.3720 -2.1016 -5.5091 43 1 3.9457 0.2871 -1.2673 44 1 3.9379 -1.2862 -2.1021 45 1 5.1439 -1.3946 0.0830 46 1 3.7132 -2.4537 0.0596 47 1 3.8404 0.3533 1.2531 48 1 3.8176 -1.1699 2.1734 49 1 0.3542 -0.2304 2.3943 50 1 1.8414 -0.6200 3.2913 51 1 0.8181 1.6908 4.2265 52 1 0.1869 4.1819 6.3565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725641344.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:40 Heat of formation + Delta-G solvation = -130.138019 kcal Electronic energy + Delta-G solvation = -31658.031443 eV Core-core repulsion = 27464.000065 eV Total energy + Delta-G solvation = -4194.031378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.64891 -39.64290 -37.92427 -37.02219 -34.75753 -33.96098 -33.05672 -32.82097 -31.42094 -31.02678 -28.60459 -27.49533 -27.32710 -26.37806 -24.62771 -22.86698 -21.37515 -20.89877 -20.40422 -19.84572 -19.12749 -17.89943 -17.27572 -16.94463 -16.20094 -15.95546 -15.65672 -15.21837 -15.07308 -14.82838 -14.71856 -14.47131 -14.28357 -13.98165 -13.54761 -13.42276 -13.33485 -13.00745 -12.75710 -12.51432 -12.42159 -12.31758 -12.06708 -12.00270 -11.90567 -11.75527 -11.67831 -11.55761 -11.35476 -11.17685 -11.13744 -10.75104 -10.63375 -10.53524 -10.43335 -10.33870 -10.12361 -10.08686 -9.75797 -9.54227 -9.28484 -9.02144 -8.08048 -7.46309 -6.53130 -3.94712 2.46536 3.02918 3.06671 3.18887 3.24974 3.74195 4.07583 4.11497 4.26400 4.40103 4.55866 4.77163 4.83973 4.97237 4.98709 5.06501 5.13392 5.17105 5.20110 5.30042 5.33994 5.39394 5.54749 5.59283 5.65976 5.72831 5.73606 5.76486 5.78402 5.88922 5.94604 5.95019 6.00972 6.05968 6.11227 6.13123 6.15691 6.27445 6.31313 6.35011 6.45684 6.55548 6.72315 7.29767 7.40815 7.43207 7.44101 7.67381 7.93197 8.14010 8.47400 9.05086 9.41137 9.91080 10.63254 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016457 B = 0.002489 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.015493 B =11246.671563 C =12051.825190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 H 0.099 0.901 4 C 0.156 3.844 5 H 0.090 0.910 6 N -0.716 5.716 7 C 0.520 3.480 8 O -0.547 6.547 9 C -0.174 4.174 10 C 0.147 3.853 11 C -0.188 4.188 12 C -0.140 4.140 13 O -0.569 6.569 14 C -0.127 4.127 15 C -0.109 4.109 16 C 0.040 3.960 17 N -0.505 5.505 18 C 0.039 3.961 19 C 0.407 3.593 20 O -0.595 6.595 21 N -0.555 5.555 22 C -0.302 4.302 23 H 0.103 0.897 24 C 0.024 3.976 25 N -0.897 5.897 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.401 0.599 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.388 0.612 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.092 0.908 50 H 0.089 0.911 51 H 0.393 0.607 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 -8.518 -15.863 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.055 4.055 3 H 0.116 0.884 4 C 0.051 3.949 5 H 0.108 0.892 6 N -0.365 5.365 7 C 0.307 3.693 8 O -0.427 6.427 9 C -0.215 4.215 10 C 0.105 3.895 11 C -0.245 4.245 12 C -0.197 4.197 13 O -0.381 6.381 14 C -0.166 4.166 15 C -0.147 4.147 16 C -0.088 4.088 17 N -0.229 5.229 18 C -0.093 4.093 19 C 0.192 3.808 20 O -0.482 6.482 21 N -0.190 5.190 22 C -0.432 4.432 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.537 5.537 26 Si 0.755 3.245 27 H -0.193 1.193 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.236 0.764 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.242 0.758 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.111 0.889 50 H 0.107 0.893 51 H 0.226 0.774 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.062 -9.168 -16.881 19.239 hybrid contribution -0.027 1.881 1.438 2.368 sum -1.089 -7.287 -15.443 17.111 Atomic orbital electron populations 1.21869 0.94925 1.01656 1.01680 1.22128 0.94974 0.99668 0.88772 0.88408 1.20982 0.93698 0.97057 0.83152 0.89157 1.46097 1.66921 1.13989 1.09515 1.20579 0.76961 0.87277 0.84440 1.90508 1.51279 1.16063 1.84883 1.22529 1.04050 1.00725 0.94151 1.20791 0.85189 0.90794 0.92708 1.22658 0.98675 0.99730 1.03464 1.21778 1.01029 1.00343 0.96571 1.86389 1.37200 1.70671 1.43820 1.21916 0.95248 1.01215 0.98185 1.21479 0.99609 0.99744 0.93874 1.22265 0.87554 1.01345 0.97637 1.62349 1.07599 1.52040 1.00912 1.22105 1.01242 0.92278 0.93656 1.21070 0.85871 0.89162 0.84650 1.90370 1.44221 1.73733 1.39911 1.42071 1.46462 1.09583 1.20879 1.19742 1.31528 0.84231 1.07713 0.87931 1.25296 0.96484 1.00659 0.95364 1.69613 1.35751 1.37266 1.11095 0.85818 0.78281 0.81942 0.78412 1.19252 1.20661 1.20656 0.92129 0.92874 0.92527 0.76411 0.88160 0.87958 0.92348 0.92109 0.90009 0.91852 0.91655 0.91211 0.75806 0.91828 0.91897 0.91633 0.91557 0.91311 0.91505 0.88949 0.89315 0.77372 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.61 37.16 0.32 -1.67 16 2 C 0.05 0.80 1.52 -67.72 -0.10 0.70 16 3 H 0.10 1.80 5.36 -51.93 -0.28 1.52 16 4 C 0.16 2.07 2.05 -67.85 -0.14 1.93 16 5 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 6 N -0.72 -7.99 4.41 -53.73 -0.24 -8.22 16 7 C 0.52 5.82 7.26 -10.99 -0.08 5.74 16 8 O -0.55 -7.44 11.44 -14.15 -0.16 -7.60 16 9 C -0.17 -1.50 4.98 -27.89 -0.14 -1.63 16 10 C 0.15 1.42 1.11 -90.62 -0.10 1.32 16 11 C -0.19 -1.82 8.51 37.16 0.32 -1.50 16 12 C -0.14 -1.09 8.84 37.16 0.33 -0.76 16 13 O -0.57 -6.94 12.95 -54.93 -0.71 -7.65 16 14 C -0.13 -1.70 5.58 -26.61 -0.15 -1.85 16 15 C -0.11 -1.43 6.09 -26.66 -0.16 -1.59 16 16 C 0.04 0.62 5.09 -3.83 -0.02 0.60 16 17 N -0.51 -7.89 4.69 -228.12 -1.07 -8.96 16 18 C 0.04 0.65 5.30 -4.97 -0.03 0.62 16 19 C 0.41 8.71 7.04 -10.99 -0.08 8.64 16 20 O -0.59 -14.12 11.20 5.55 0.06 -14.06 16 21 N -0.56 -13.20 5.29 -10.96 -0.06 -13.26 16 22 C -0.30 -8.00 9.68 -14.93 -0.14 -8.14 16 23 H 0.10 2.86 7.16 -52.49 -0.38 2.48 16 24 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 25 N -0.90 -23.53 13.05 55.50 0.72 -22.81 16 26 Si 0.93 20.27 29.55 -169.99 -5.02 15.25 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 28 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 29 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 30 H 0.06 0.92 6.24 -51.93 -0.32 0.60 16 31 H 0.05 0.65 7.50 -51.93 -0.39 0.26 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.95 8.43 -40.82 -0.34 3.60 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.95 5.77 -51.93 -0.30 0.65 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.39 4.81 6.30 45.56 0.29 5.10 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.29 6.00 -51.93 -0.31 0.97 16 48 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 49 H 0.09 1.42 6.32 -51.93 -0.33 1.09 16 50 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 51 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 52 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 397.77 15.07 5.99 5.99 Total: -1.00 -29.42 397.77 -8.88 -38.30 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -8.13 Total: 20.11 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.27 Total: 2.92 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.64 Total: -53.25 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.81 Total: -29.32 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.42 -8.88 -38.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725641344.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.840 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds