Wall clock time and date at job start Wed Apr 1 2020 01:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.45227 * 2 1 4 4 C 1.53046 * 109.46258 * 240.03079 * 2 1 3 5 5 H 1.09003 * 109.53089 * 300.76136 * 4 2 1 6 6 N 1.46491 * 109.50443 * 60.85991 * 4 2 1 7 7 C 1.34776 * 120.00341 * 204.80755 * 6 4 2 8 8 O 1.21286 * 119.99851 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00511 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47216 * 186.08423 * 9 7 6 11 11 C 1.52998 * 109.46897 * 60.34006 * 10 9 7 12 12 C 1.53007 * 109.46894 * 180.33494 * 10 9 7 13 13 O 1.42893 * 109.47433 * 300.33475 * 10 9 7 14 14 C 1.53117 * 109.27705 * 180.80578 * 4 2 1 15 15 C 1.53113 * 109.16524 * 57.64984 * 14 4 2 16 16 C 1.53035 * 109.27977 * 302.34721 * 15 14 4 17 17 N 1.46844 * 109.46523 * 119.97877 * 2 1 3 18 18 C 1.46905 * 110.99641 * 305.85197 * 17 2 1 19 19 C 1.50702 * 109.47200 * 301.84020 * 18 17 2 20 20 O 1.21293 * 119.99889 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99805 * 180.02562 * 19 18 17 22 22 C 1.37094 * 119.99870 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00337 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99929 * 179.97438 * 22 21 19 25 25 N 1.31404 * 120.00064 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99784 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47126 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47115 * 120.00361 * 26 24 22 29 29 H 1.48507 * 109.46797 * 240.00112 * 26 24 22 30 30 H 1.08998 * 109.46783 * 300.02186 * 1 2 3 31 31 H 1.08999 * 109.47135 * 60.02899 * 1 2 3 32 32 H 1.09003 * 109.46914 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00503 * 24.80380 * 6 4 2 34 34 H 1.08997 * 109.47293 * 306.08692 * 9 7 6 35 35 H 1.09005 * 109.46794 * 66.08527 * 9 7 6 36 36 H 1.08996 * 109.47549 * 59.99297 * 11 10 9 37 37 H 1.09000 * 109.47385 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.46784 * 299.99320 * 11 10 9 39 39 H 1.09001 * 109.47201 * 62.80902 * 12 10 9 40 40 H 1.09003 * 109.46758 * 182.80617 * 12 10 9 41 41 H 1.08995 * 109.47003 * 302.80708 * 12 10 9 42 42 H 0.96697 * 114.00042 * 60.00173 * 13 10 9 43 43 H 1.09003 * 109.52304 * 297.74144 * 14 4 2 44 44 H 1.09000 * 109.52051 * 177.55929 * 14 4 2 45 45 H 1.08996 * 109.50530 * 182.40365 * 15 14 4 46 46 H 1.09001 * 109.53302 * 62.30937 * 15 14 4 47 47 H 1.08999 * 109.46490 * 299.16048 * 16 15 14 48 48 H 1.09004 * 109.46262 * 179.19132 * 16 15 14 49 49 H 1.09000 * 109.46812 * 61.83729 * 18 17 2 50 50 H 1.08999 * 109.46855 * 181.83585 * 18 17 2 51 51 H 0.97002 * 119.99994 * 359.97438 * 21 19 18 52 52 H 0.97006 * 120.00003 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 1 1.6660 -1.7447 -1.2584 6 7 1.5689 -0.0183 -2.4461 7 6 1.4441 -0.6822 -3.6124 8 8 1.7222 -1.8612 -3.6717 9 6 0.9601 0.0406 -4.8429 10 6 0.7646 -0.9636 -5.9805 11 6 -0.2764 -2.0059 -5.5673 12 6 0.2812 -0.2285 -7.2323 13 8 2.0057 -1.6146 -6.2598 14 6 3.5710 -0.7360 -1.2357 15 6 4.0549 -1.4187 0.0466 16 6 3.4866 -0.6777 1.2590 17 7 2.0193 -0.6918 1.1993 18 6 1.4374 -0.1106 2.4165 19 6 1.7793 1.3554 2.4863 20 8 2.4429 1.8658 1.6086 21 7 1.3485 2.0991 3.5244 22 6 1.6600 3.4327 3.5881 23 1 2.2508 3.8872 2.8067 24 6 1.2154 4.1996 4.6582 25 7 0.4969 3.6466 5.6093 26 14 1.6392 6.0169 4.7447 27 1 2.4527 6.3924 3.5603 28 1 0.3882 6.8167 4.7604 29 1 2.4144 6.2860 5.9825 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.3468 0.9248 -2.3988 34 1 0.0122 0.5329 -4.6259 35 1 1.6974 0.7867 -5.1396 36 1 -1.2230 -1.5094 -5.3542 37 1 -0.4160 -2.7212 -6.3779 38 1 0.0680 -2.5297 -4.6755 39 1 1.0446 0.4792 -7.5556 40 1 0.0943 -0.9499 -8.0278 41 1 -0.6395 0.3088 -7.0052 42 1 2.3720 -2.1016 -5.5091 43 1 3.9457 0.2871 -1.2673 44 1 3.9379 -1.2862 -2.1021 45 1 5.1439 -1.3946 0.0830 46 1 3.7132 -2.4537 0.0596 47 1 3.8404 0.3533 1.2531 48 1 3.8176 -1.1699 2.1734 49 1 0.3542 -0.2304 2.3943 50 1 1.8414 -0.6200 3.2913 51 1 0.8181 1.6908 4.2265 52 1 0.1869 4.1819 6.3565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725641344.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:33 Heat of formation + Delta-G solvation = -152.007283 kcal Electronic energy + Delta-G solvation = -31658.979765 eV Core-core repulsion = 27464.000065 eV Total energy + Delta-G solvation = -4194.979700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.70228 -40.91570 -39.24130 -38.10531 -36.14552 -35.52222 -34.25238 -33.67864 -33.29312 -32.15838 -29.51909 -28.68826 -28.17860 -27.55214 -26.36516 -24.06425 -22.60286 -21.84466 -21.35445 -21.12651 -20.65658 -19.72491 -18.26439 -17.84999 -17.61721 -17.14816 -16.69459 -16.58819 -16.32027 -16.15301 -15.88047 -15.71829 -15.52884 -15.32262 -14.99310 -14.66497 -14.50905 -14.14797 -13.74597 -13.55824 -13.49066 -13.21112 -13.17892 -13.06316 -13.02501 -12.96414 -12.84631 -12.75715 -12.59765 -12.42210 -12.41999 -12.16144 -11.99765 -11.87052 -11.81813 -11.75508 -11.40740 -11.20248 -10.93169 -10.91283 -10.68081 -10.02552 -9.98747 -8.98450 -8.46371 -5.95932 1.33871 1.40433 1.53275 1.59098 2.01338 2.09658 2.27786 3.03195 3.19806 3.25584 3.37413 3.60178 3.73434 3.83921 3.86849 4.04089 4.08921 4.14134 4.28271 4.38612 4.41669 4.46613 4.50939 4.55893 4.60563 4.64929 4.70333 4.77418 4.78000 4.80636 4.89075 4.93350 4.98514 5.03396 5.07017 5.07586 5.16343 5.18660 5.28919 5.30308 5.36828 5.40034 5.48042 5.51921 5.91299 6.06771 6.14055 6.51663 6.58628 6.79076 7.11651 7.25663 7.55466 8.09470 8.68990 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016457 B = 0.002489 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.015493 B =11246.671563 C =12051.825190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.058 3.942 3 H 0.066 0.934 4 C 0.167 3.833 5 H 0.081 0.919 6 N -0.712 5.712 7 C 0.519 3.481 8 O -0.572 6.572 9 C -0.167 4.167 10 C 0.137 3.863 11 C -0.184 4.184 12 C -0.138 4.138 13 O -0.586 6.586 14 C -0.123 4.123 15 C -0.102 4.102 16 C 0.041 3.959 17 N -0.498 5.498 18 C 0.047 3.953 19 C 0.412 3.588 20 O -0.617 6.617 21 N -0.570 5.570 22 C -0.328 4.328 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.989 3.011 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.274 1.274 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.409 0.591 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.384 0.616 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.033 0.967 48 H 0.076 0.924 49 H 0.111 0.889 50 H 0.107 0.893 51 H 0.395 0.605 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 -8.576 -16.693 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.051 4.051 3 H 0.083 0.917 4 C 0.062 3.938 5 H 0.100 0.900 6 N -0.362 5.362 7 C 0.307 3.693 8 O -0.453 6.453 9 C -0.207 4.207 10 C 0.096 3.904 11 C -0.241 4.241 12 C -0.195 4.195 13 O -0.398 6.398 14 C -0.162 4.162 15 C -0.140 4.140 16 C -0.087 4.087 17 N -0.221 5.221 18 C -0.085 4.085 19 C 0.200 3.800 20 O -0.505 6.505 21 N -0.207 5.207 22 C -0.458 4.458 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.813 3.187 27 H -0.198 1.198 28 H -0.197 1.197 29 H -0.199 1.199 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.245 0.755 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.237 0.763 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.052 0.948 48 H 0.095 0.905 49 H 0.129 0.871 50 H 0.125 0.875 51 H 0.229 0.771 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.869 -9.228 -17.729 20.074 hybrid contribution 0.250 1.822 1.610 2.444 sum -1.620 -7.406 -16.119 17.813 Atomic orbital electron populations 1.21827 0.93775 1.02256 1.01744 1.22036 0.95845 0.97912 0.89321 0.91669 1.20718 0.93486 0.96401 0.83205 0.90043 1.46029 1.66901 1.14287 1.09004 1.21059 0.76291 0.87037 0.84870 1.90509 1.52227 1.17323 1.85231 1.22540 1.05613 1.00362 0.92182 1.21063 0.84244 0.91023 0.94039 1.22604 0.99426 0.99758 1.02339 1.21805 1.02035 1.00207 0.95480 1.86381 1.38460 1.70951 1.43972 1.21870 0.95373 1.00471 0.98445 1.21451 1.00417 0.99662 0.92511 1.22259 0.87432 0.99673 0.99339 1.62449 1.07699 1.51202 1.00741 1.22182 1.02595 0.88692 0.95012 1.22023 0.83984 0.90872 0.83162 1.90386 1.44686 1.74917 1.40495 1.42141 1.47587 1.09084 1.21858 1.19651 1.32473 0.85808 1.07844 0.90298 1.26005 0.96201 1.04279 0.94789 1.69673 1.36297 1.38573 1.11454 0.84927 0.78216 0.77372 0.78183 1.19770 1.19699 1.19908 0.93678 0.91274 0.91522 0.75527 0.85467 0.86850 0.90602 0.92355 0.92133 0.91791 0.92009 0.88886 0.76296 0.93102 0.91634 0.90242 0.90632 0.94824 0.90531 0.87117 0.87453 0.77135 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.61 71.98 0.62 -3.03 16 2 C 0.06 1.70 1.52 44.94 0.07 1.77 16 3 H 0.07 2.42 5.36 -2.39 -0.01 2.41 16 4 C 0.17 4.31 2.05 45.05 0.09 4.40 16 5 H 0.08 2.31 7.58 -2.39 -0.02 2.29 16 6 N -0.71 -15.04 4.41 -442.29 -1.95 -16.99 16 7 C 0.52 10.89 7.26 87.66 0.64 11.53 16 8 O -0.57 -15.15 11.44 15.79 0.18 -14.97 16 9 C -0.17 -2.49 4.98 29.85 0.15 -2.34 16 10 C 0.14 2.42 1.11 -10.79 -0.01 2.41 16 11 C -0.18 -3.29 8.51 71.98 0.61 -2.68 16 12 C -0.14 -1.84 8.84 71.98 0.64 -1.20 16 13 O -0.59 -13.94 12.95 -130.14 -1.69 -15.62 16 14 C -0.12 -3.22 5.58 30.67 0.17 -3.05 16 15 C -0.10 -2.58 6.09 30.64 0.19 -2.39 16 16 C 0.04 1.25 5.09 86.32 0.44 1.69 16 17 N -0.50 -15.09 4.69 -875.62 -4.11 -19.20 16 18 C 0.05 1.52 5.30 85.56 0.45 1.98 16 19 C 0.41 17.88 7.04 87.66 0.62 18.49 16 20 O -0.62 -30.07 11.20 -3.07 -0.03 -30.10 16 21 N -0.57 -27.60 5.29 -306.99 -1.62 -29.22 16 22 C -0.33 -17.73 9.68 84.04 0.81 -16.92 16 23 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -48.27 13.05 21.66 0.28 -47.98 16 26 Si 0.99 41.64 29.55 68.60 2.03 43.67 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 29 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 30 H 0.04 1.32 6.24 -2.39 -0.01 1.31 16 31 H 0.07 1.57 7.50 -2.39 -0.02 1.56 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.41 7.50 8.43 -92.71 -0.78 6.72 16 34 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 1.36 5.77 -2.39 -0.01 1.35 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 42 H 0.38 9.53 6.30 -74.06 -0.47 9.06 16 43 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.03 1.28 6.00 -2.39 -0.01 1.26 16 48 H 0.08 2.16 8.06 -2.39 -0.02 2.14 16 49 H 0.11 3.25 6.32 -2.39 -0.02 3.23 16 50 H 0.11 3.14 8.06 -2.39 -0.02 3.12 16 51 H 0.39 18.44 7.90 -92.71 -0.73 17.71 16 52 H 0.28 13.64 8.31 -92.70 -0.77 12.87 16 Total: -1.00 -64.53 397.77 -1.99 -66.51 By element: Atomic # 1 Polarization: 54.47 SS G_CDS: -1.03 Total: 53.44 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.95 Total: 10.46 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -7.40 Total: -113.39 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -1.54 Total: -60.69 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -64.53 -1.99 -66.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725641344.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.493 kcal (2) G-P(sol) polarization free energy of solvation -64.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds